Wall clock time and date at job start Mon Mar 30 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47182 * 2 1 4 4 C 1.38307 * 119.92032 * 90.00363 * 3 2 1 5 5 C 1.38083 * 120.07269 * 180.02562 * 4 3 2 6 6 C 1.38935 * 119.92736 * 359.97239 * 5 4 3 7 7 N 1.39675 * 120.07375 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99733 * 60.00735 * 7 6 5 9 9 C 1.46898 * 111.00076 * 296.04910 * 7 6 5 10 10 C 1.38888 * 119.84765 * 0.25843 * 6 5 4 11 11 C 1.50700 * 120.03678 * 179.72085 * 10 6 5 12 12 H 1.08999 * 109.47055 * 325.00275 * 11 10 6 13 13 N 1.46896 * 109.47151 * 204.99776 * 11 10 6 14 14 C 1.50700 * 109.46603 * 85.00294 * 11 10 6 15 15 H 1.08000 * 120.00279 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99683 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00234 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99981 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47269 * 89.99682 * 18 16 14 20 20 H 1.48502 * 109.46886 * 209.99535 * 18 16 14 21 21 H 1.48501 * 109.47024 * 329.99492 * 18 16 14 22 22 C 1.38131 * 119.92307 * 359.51272 * 10 6 5 23 23 H 1.08999 * 109.46931 * 299.99687 * 1 2 3 24 24 H 1.09001 * 109.47009 * 59.99533 * 1 2 3 25 25 H 1.09003 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46786 * 240.00806 * 2 1 3 27 27 H 1.08994 * 109.47844 * 120.00472 * 2 1 3 28 28 H 1.07998 * 119.96686 * 359.97438 * 4 3 2 29 29 H 1.08004 * 120.03462 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47401 * 59.99521 * 8 7 6 31 31 H 1.09001 * 109.46874 * 299.99534 * 8 7 6 32 32 H 1.09004 * 109.46970 * 179.97438 * 8 7 6 33 33 H 1.09006 * 109.46770 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.47456 * 300.00035 * 9 7 6 35 35 H 1.09000 * 109.46814 * 60.00340 * 9 7 6 36 36 H 1.00903 * 110.99800 * 176.04894 * 13 11 10 37 37 H 1.00904 * 111.00508 * 300.00332 * 13 11 10 38 38 H 0.96996 * 120.00344 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.96150 * 180.22909 * 22 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0712 1.1987 5 6 2.7222 3.3733 1.2024 6 6 2.9542 4.0298 0.0002 7 7 3.4188 5.3470 0.0003 8 6 4.7138 5.4484 0.6864 9 6 2.4317 6.2533 0.6021 10 6 2.7176 3.3753 -1.2018 11 6 2.9619 4.0855 -2.5083 12 1 2.7096 5.1404 -2.4011 13 7 2.1247 3.4856 -3.5557 14 6 4.4141 3.9523 -2.8884 15 1 5.0923 3.4083 -2.2477 16 6 4.8771 4.5260 -4.0535 17 7 4.0513 5.1890 -4.8334 18 14 6.6773 4.3617 -4.5244 19 1 6.8646 3.1383 -5.3451 20 1 7.0946 5.5521 -5.3079 21 1 7.5037 4.2640 -3.2944 22 6 2.2622 2.0712 -1.1982 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0814 1.5605 2.1330 29 1 2.9012 3.8807 2.1388 30 1 5.4448 4.8199 0.1777 31 1 4.6049 5.1161 1.7188 32 1 5.0527 6.4843 0.6716 33 1 2.8191 7.2722 0.5898 34 1 1.5037 6.2101 0.0320 35 1 2.2403 5.9502 1.6314 36 1 2.2221 3.9854 -4.4268 37 1 2.3397 2.5069 -3.6743 38 1 4.3769 5.5922 -5.6533 39 1 2.0815 1.5604 -2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:47 Heat of formation + Delta-G solvation = 6.895021 kcal Electronic energy + Delta-G solvation = -18644.532782 eV Core-core repulsion = 15971.840426 eV Total energy + Delta-G solvation = -2672.692356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92118 -37.82456 -36.67200 -34.11282 -33.28969 -30.75539 -29.69363 -28.42611 -27.83699 -25.61477 -24.72146 -23.36562 -21.85641 -20.61463 -18.48284 -17.80573 -16.96127 -16.62837 -15.91912 -15.82710 -15.56950 -14.90393 -14.84726 -14.76322 -14.28353 -14.04462 -13.69851 -13.46620 -13.21858 -13.11001 -12.95458 -12.77861 -12.65387 -12.56364 -12.31968 -12.27774 -11.90945 -11.82143 -11.56935 -11.26145 -10.63235 -9.49897 -9.27746 -9.12795 -8.99820 -8.02532 -6.24648 0.54086 0.72727 1.36183 1.38284 1.47910 2.40415 2.98926 3.13317 3.15571 4.01810 4.06757 4.18855 4.30471 4.42065 4.42937 4.48456 4.58280 4.61799 4.65257 4.79636 4.89396 4.91396 4.96570 4.99742 5.10250 5.13314 5.16190 5.30138 5.44577 5.55121 5.62125 5.71477 5.89151 6.02220 6.11271 6.19267 6.27394 6.72836 6.76828 7.02450 7.18083 7.47839 8.92090 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.008326 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.604862 B = 3362.278911 C = 4138.042902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.090 4.090 4 C -0.129 4.129 5 C -0.150 4.150 6 C 0.063 3.937 7 N -0.523 5.523 8 C 0.042 3.958 9 C 0.037 3.963 10 C -0.040 4.040 11 C 0.259 3.741 12 H 0.020 0.980 13 N -0.847 5.847 14 C -0.528 4.528 15 H 0.035 0.965 16 C 0.022 3.978 17 N -0.919 5.919 18 Si 0.951 3.049 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.276 1.276 22 C -0.120 4.120 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.343 0.657 37 H 0.314 0.686 38 H 0.264 0.736 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -5.794 12.374 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.148 4.148 5 C -0.171 4.171 6 C -0.031 4.031 7 N -0.244 5.244 8 C -0.105 4.105 9 C -0.109 4.109 10 C -0.042 4.042 11 C 0.149 3.851 12 H 0.038 0.962 13 N -0.375 5.375 14 C -0.568 4.568 15 H 0.053 0.947 16 C -0.177 4.177 17 N -0.560 5.560 18 Si 0.777 3.223 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.201 1.201 22 C -0.139 4.139 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.162 0.838 29 H 0.148 0.852 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.073 0.927 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.093 -5.299 12.195 13.912 hybrid contribution 1.909 0.024 -0.481 1.969 sum -2.184 -5.275 11.714 13.031 Atomic orbital electron populations 1.21706 0.94107 1.02346 1.01654 1.20536 0.96652 0.91076 1.03279 1.20166 0.99026 0.97379 0.92470 1.20997 1.01371 0.94394 0.97988 1.21634 1.01763 0.96361 0.97295 1.18730 1.01313 0.90521 0.92522 1.59264 1.04165 1.04762 1.56172 1.22292 0.89872 1.02435 0.95855 1.22371 0.94963 0.96618 0.96993 1.20340 0.94361 0.94199 0.95272 1.17522 0.89422 0.92655 0.85500 0.96223 1.59590 1.58883 1.05865 1.13208 1.21787 0.95948 1.33372 1.05652 0.94702 1.25624 1.01134 0.94402 0.96580 1.69844 1.36087 1.36327 1.13722 0.85675 0.81119 0.77531 0.77930 1.20212 1.20826 1.20091 1.20861 1.00835 0.94132 0.98058 0.92510 0.93949 0.90653 0.91322 0.89495 0.83817 0.85153 0.93638 0.94039 0.90310 0.90170 0.93097 0.94070 0.84237 0.87582 0.92692 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.89 71.98 0.71 -2.31 16 2 C -0.08 -1.88 6.06 29.85 0.18 -1.70 16 3 C -0.09 -2.89 5.14 -19.84 -0.10 -2.99 16 4 C -0.13 -3.83 9.69 22.25 0.22 -3.61 16 5 C -0.15 -4.94 8.57 22.40 0.19 -4.75 16 6 C 0.06 2.56 4.71 38.21 0.18 2.74 16 7 N -0.52 -20.53 4.03 -745.07 -3.00 -23.53 16 8 C 0.04 1.42 9.34 127.69 1.19 2.61 16 9 C 0.04 1.18 9.38 127.69 1.20 2.38 16 10 C -0.04 -1.83 5.01 -19.73 -0.10 -1.93 16 11 C 0.26 13.66 2.64 43.42 0.11 13.77 16 12 H 0.02 1.19 7.63 -2.39 -0.02 1.18 16 13 N -0.85 -42.59 8.79 -174.96 -1.54 -44.13 16 14 C -0.53 -29.60 8.71 25.60 0.22 -29.37 16 15 H 0.03 2.01 7.74 -2.91 -0.02 1.99 16 16 C 0.02 1.20 5.38 84.65 0.46 1.66 16 17 N -0.92 -52.73 11.54 21.45 0.25 -52.49 16 18 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 C -0.12 -4.79 8.92 22.25 0.20 -4.59 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 27 H 0.09 1.70 8.08 -2.39 -0.02 1.69 16 28 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.13 3.59 7.02 -2.91 -0.02 3.57 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.17 7.12 -2.39 -0.02 1.15 16 32 H 0.08 2.35 8.12 -2.38 -0.02 2.33 16 33 H 0.08 2.26 8.12 -2.38 -0.02 2.24 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.11 7.34 -2.39 -0.02 1.09 16 36 H 0.34 18.53 7.08 -89.69 -0.63 17.89 16 37 H 0.31 14.91 7.20 -89.69 -0.65 14.27 16 38 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.11 4.59 6.29 -2.91 -0.02 4.57 16 Total: -1.00 -62.80 315.58 2.15 -60.65 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -0.24 Total: 41.09 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 4.66 Total: -28.11 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -4.29 Total: -120.14 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.80 2.15 -60.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.542 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds