Wall clock time and date at job start Mon Mar 30 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34133 * 125.98739 * 2 1 4 4 C 1.30502 * 109.25701 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.65056 * 179.97438 * 4 3 2 6 6 C 1.53003 * 110.01296 * 224.32115 * 5 4 3 7 7 C 1.54263 * 110.03502 * 102.93020 * 5 4 3 8 8 C 1.54969 * 104.15920 * 217.13824 * 7 5 4 9 9 C 1.54884 * 102.77813 * 37.88206 * 8 7 5 10 10 C 1.53874 * 110.02957 * 345.70665 * 5 4 3 11 11 N 1.35043 * 108.70005 * 359.76218 * 4 3 2 12 12 H 0.96993 * 126.40084 * 180.26472 * 11 4 3 13 13 C 1.34670 * 125.99225 * 179.97438 * 2 1 3 14 14 C 1.50698 * 126.59190 * 359.96113 * 13 2 1 15 15 C 1.50694 * 109.47166 * 280.02666 * 14 13 2 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 H 1.09000 * 109.46838 * 269.99910 * 1 2 3 24 24 H 1.08996 * 109.47619 * 30.00097 * 1 2 3 25 25 H 1.08997 * 109.47028 * 150.00217 * 1 2 3 26 26 H 1.08996 * 109.47068 * 60.69869 * 6 5 4 27 27 H 1.09003 * 109.46927 * 180.69860 * 6 5 4 28 28 H 1.09004 * 109.46869 * 300.69396 * 6 5 4 29 29 H 1.09001 * 110.48721 * 335.77821 * 7 5 4 30 30 H 1.08998 * 110.48990 * 98.42715 * 7 5 4 31 31 H 1.09004 * 110.71520 * 279.57329 * 8 7 5 32 32 H 1.08992 * 110.76542 * 156.22617 * 8 7 5 33 33 H 1.08994 * 110.48826 * 203.40357 * 9 8 7 34 34 H 1.09007 * 110.48561 * 80.76799 * 9 8 7 35 35 H 1.09000 * 110.03202 * 238.57136 * 10 5 4 36 36 H 1.08993 * 110.03547 * 0.02562 * 10 5 4 37 37 H 1.08998 * 109.46890 * 160.02656 * 14 13 2 38 38 H 1.09002 * 109.46875 * 40.02458 * 14 13 2 39 39 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7097 -0.0006 5 6 4.7386 1.6295 -0.0013 6 6 5.7807 1.1343 -1.0062 7 6 5.3558 1.6955 1.4109 8 6 5.8031 3.1717 1.5606 9 6 4.6665 3.9477 0.8499 10 6 4.3007 3.0608 -0.3582 11 7 3.5913 -0.6400 0.0044 12 1 4.3913 -1.1884 0.0088 13 6 2.2984 -1.0896 0.0005 14 6 1.8473 -2.5275 0.0020 15 6 1.4617 -2.9316 1.4016 16 1 1.5362 -2.2187 2.2094 17 6 1.0138 -4.2116 1.6509 18 7 0.6824 -4.5658 2.8733 19 14 0.8856 -5.4449 0.2538 20 1 2.1670 -6.1846 0.1274 21 1 -0.2129 -6.4028 0.5384 22 1 0.6007 -4.7278 -1.0150 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 5.3464 1.1265 -2.0059 27 1 6.6448 1.7985 -0.9905 28 1 6.0932 0.1251 -0.7378 29 1 4.6101 1.4447 2.1653 30 1 6.2136 1.0269 1.4840 31 1 6.7566 3.3384 1.0595 32 1 5.8638 3.4524 2.6120 33 1 5.0217 4.9220 0.5144 34 1 3.8091 4.0610 1.5134 35 1 4.8313 3.4030 -1.2468 36 1 3.2249 3.0902 -0.5305 37 1 2.6600 -3.1635 -0.3490 38 1 0.9873 -2.6392 -0.6584 39 1 0.3669 -5.4662 3.0486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260544049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:52 Heat of formation + Delta-G solvation = 22.859672 kcal Electronic energy + Delta-G solvation = -18351.548087 eV Core-core repulsion = 15679.548010 eV Total energy + Delta-G solvation = -2672.000077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.57517 -38.33595 -33.46635 -32.62053 -31.66823 -30.63608 -28.79796 -28.22739 -25.89993 -24.80252 -22.41346 -21.07151 -20.63218 -19.01716 -18.45809 -16.88655 -16.73970 -15.31229 -15.02803 -14.55704 -14.18552 -13.67786 -13.35618 -13.07786 -12.74286 -12.61824 -12.31051 -12.13619 -11.88146 -11.77664 -11.43164 -11.13992 -11.00412 -10.95705 -10.85519 -10.71521 -10.64020 -10.45794 -10.42926 -10.10922 -9.48863 -9.15045 -9.04330 -8.63809 -7.19309 -6.12504 -4.12313 2.82664 3.22761 3.31859 3.33414 3.72954 3.78706 4.35299 4.46752 4.66649 4.77771 5.05769 5.19224 5.25470 5.33315 5.45003 5.56706 5.69109 5.69781 5.81057 5.87875 5.89987 5.99587 6.01850 6.06604 6.15510 6.19178 6.34345 6.39352 6.47779 6.50371 6.57307 6.73151 6.84035 6.89087 7.32507 7.53821 7.63672 8.09339 8.44937 8.82333 8.93515 9.46644 11.00369 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.005503 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.190137 B = 5086.777250 C = 5225.666300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.022 4.022 3 N -0.484 5.484 4 C 0.188 3.812 5 C 0.027 3.973 6 C -0.140 4.140 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.111 4.111 11 N -0.565 5.565 12 H 0.410 0.590 13 C 0.041 3.959 14 C 0.053 3.947 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.264 1.264 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.017 0.983 38 H 0.042 0.958 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 12.197 -6.932 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.149 4.149 3 N -0.204 5.204 4 C -0.074 4.074 5 C 0.025 3.975 6 C -0.198 4.198 7 C -0.154 4.154 8 C -0.160 4.160 9 C -0.159 4.159 10 C -0.149 4.149 11 N -0.168 5.168 12 H 0.247 0.753 13 C -0.075 4.075 14 C 0.014 3.986 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.189 1.189 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.285 12.872 -6.827 17.278 hybrid contribution 0.627 -2.044 -0.467 2.188 sum 9.912 10.829 -7.294 16.392 Atomic orbital electron populations 1.19846 0.88200 1.01041 1.01920 1.20276 0.96151 0.87770 1.10744 1.69846 0.99551 1.30873 1.20143 1.22560 0.94571 0.81502 1.08811 1.19470 0.89047 0.93154 0.95816 1.21951 0.98171 1.00821 0.98850 1.22546 1.00074 0.96971 0.95779 1.22483 0.98263 0.94877 1.00334 1.22331 0.98329 0.97891 0.97364 1.22196 1.03674 0.91544 0.97441 1.42984 1.08448 1.07526 1.57803 0.75296 1.21570 0.82318 0.98405 1.05195 1.18268 0.96230 0.84930 0.99124 1.20897 1.44185 0.97916 0.92088 0.90787 1.24969 0.94680 0.97992 0.95428 1.69898 1.44507 1.19586 1.19533 0.86843 0.78105 0.81527 0.83268 1.20304 1.21048 1.18865 0.91779 0.92846 0.91578 0.92215 0.91620 0.92958 0.90969 0.91570 0.91684 0.91670 0.91998 0.91411 0.92001 0.88981 0.96530 0.93956 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 10.22 36.00 0.37 -0.64 16 2 C -0.02 -0.49 7.09 -82.85 -0.59 -1.07 16 3 N -0.48 -9.83 9.82 -7.07 -0.07 -9.90 16 4 C 0.19 3.34 6.34 -155.41 -0.98 2.36 16 5 C 0.03 0.36 0.91 -154.54 -0.14 0.22 16 6 C -0.14 -1.54 8.02 37.16 0.30 -1.24 16 7 C -0.12 -1.45 5.90 -25.03 -0.15 -1.60 16 8 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 9 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 10 C -0.11 -1.40 6.07 -25.61 -0.16 -1.55 16 11 N -0.56 -10.45 5.99 -6.54 -0.04 -10.49 16 12 H 0.41 6.49 8.51 -40.82 -0.35 6.15 16 13 C 0.04 0.89 6.43 -81.60 -0.52 0.37 16 14 C 0.05 1.25 4.27 -29.04 -0.12 1.12 16 15 C -0.51 -14.30 9.65 -34.44 -0.33 -14.63 16 16 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 19 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.25 7.40 -51.93 -0.38 0.87 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 29 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 30 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.67 7.67 -51.93 -0.40 0.28 16 36 H 0.09 1.39 6.66 -51.93 -0.35 1.04 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.04 0.99 6.58 -51.93 -0.34 0.65 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -31.27 311.27 -8.47 -39.75 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.39 Total: 3.80 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.77 Total: -17.70 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.66 Total: -46.70 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.27 -8.47 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260544049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.608 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds