Wall clock time and date at job start Mon Mar 30 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34133 * 125.98739 * 2 1 4 4 C 1.30502 * 109.25701 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.65056 * 179.97438 * 4 3 2 6 6 C 1.53003 * 110.01296 * 224.32115 * 5 4 3 7 7 C 1.54263 * 110.03502 * 102.93020 * 5 4 3 8 8 C 1.54969 * 104.15920 * 217.13824 * 7 5 4 9 9 C 1.54884 * 102.77813 * 37.88206 * 8 7 5 10 10 C 1.53874 * 110.02957 * 345.70665 * 5 4 3 11 11 N 1.35043 * 108.70005 * 359.76218 * 4 3 2 12 12 H 0.96993 * 126.40084 * 180.26472 * 11 4 3 13 13 C 1.34670 * 125.99225 * 179.97438 * 2 1 3 14 14 C 1.50698 * 126.59190 * 359.96113 * 13 2 1 15 15 C 1.50694 * 109.47166 * 280.02666 * 14 13 2 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 H 1.09000 * 109.46838 * 269.99910 * 1 2 3 24 24 H 1.08996 * 109.47619 * 30.00097 * 1 2 3 25 25 H 1.08997 * 109.47028 * 150.00217 * 1 2 3 26 26 H 1.08996 * 109.47068 * 60.69869 * 6 5 4 27 27 H 1.09003 * 109.46927 * 180.69860 * 6 5 4 28 28 H 1.09004 * 109.46869 * 300.69396 * 6 5 4 29 29 H 1.09001 * 110.48721 * 335.77821 * 7 5 4 30 30 H 1.08998 * 110.48990 * 98.42715 * 7 5 4 31 31 H 1.09004 * 110.71520 * 279.57329 * 8 7 5 32 32 H 1.08992 * 110.76542 * 156.22617 * 8 7 5 33 33 H 1.08994 * 110.48826 * 203.40357 * 9 8 7 34 34 H 1.09007 * 110.48561 * 80.76799 * 9 8 7 35 35 H 1.09000 * 110.03202 * 238.57136 * 10 5 4 36 36 H 1.08993 * 110.03547 * 0.02562 * 10 5 4 37 37 H 1.08998 * 109.46890 * 160.02656 * 14 13 2 38 38 H 1.09002 * 109.46875 * 40.02458 * 14 13 2 39 39 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7097 -0.0006 5 6 4.7386 1.6295 -0.0013 6 6 5.7807 1.1343 -1.0062 7 6 5.3558 1.6955 1.4109 8 6 5.8031 3.1717 1.5606 9 6 4.6665 3.9477 0.8499 10 6 4.3007 3.0608 -0.3582 11 7 3.5913 -0.6400 0.0044 12 1 4.3913 -1.1884 0.0088 13 6 2.2984 -1.0896 0.0005 14 6 1.8473 -2.5275 0.0020 15 6 1.4617 -2.9316 1.4016 16 1 1.5362 -2.2187 2.2094 17 6 1.0138 -4.2116 1.6509 18 7 0.6824 -4.5658 2.8733 19 14 0.8856 -5.4449 0.2538 20 1 2.1670 -6.1846 0.1274 21 1 -0.2129 -6.4028 0.5384 22 1 0.6007 -4.7278 -1.0150 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 5.3464 1.1265 -2.0059 27 1 6.6448 1.7985 -0.9905 28 1 6.0932 0.1251 -0.7378 29 1 4.6101 1.4447 2.1653 30 1 6.2136 1.0269 1.4840 31 1 6.7566 3.3384 1.0595 32 1 5.8638 3.4524 2.6120 33 1 5.0217 4.9220 0.5144 34 1 3.8091 4.0610 1.5134 35 1 4.8313 3.4030 -1.2468 36 1 3.2249 3.0902 -0.5305 37 1 2.6600 -3.1635 -0.3490 38 1 0.9873 -2.6392 -0.6584 39 1 0.3669 -5.4662 3.0486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260544049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:52 Heat of formation + Delta-G solvation = 4.382614 kcal Electronic energy + Delta-G solvation = -18352.349312 eV Core-core repulsion = 15679.548010 eV Total energy + Delta-G solvation = -2672.801303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.08350 -39.37445 -35.46293 -34.10580 -33.34843 -31.90278 -30.25571 -29.49077 -27.25423 -26.16660 -24.16695 -22.55785 -21.58572 -20.43716 -19.84533 -19.02306 -18.11742 -16.48459 -16.39274 -16.02926 -15.92134 -14.95102 -14.66728 -14.45724 -14.14446 -14.03991 -13.76426 -13.59996 -13.36958 -13.15229 -12.94137 -12.72976 -12.48988 -12.05068 -11.97920 -11.94188 -11.86175 -11.70808 -11.67439 -11.57337 -11.35829 -10.84860 -10.68374 -10.61209 -8.82800 -8.30869 -6.37433 1.26020 1.36094 1.39287 1.50546 2.19678 2.30131 2.34069 3.03412 3.31331 3.66214 3.79646 3.97063 4.26666 4.38564 4.43107 4.46616 4.52707 4.55921 4.61464 4.71491 4.78733 4.83804 4.92910 4.96594 5.01826 5.03439 5.11027 5.14596 5.15806 5.25499 5.28760 5.38947 5.47393 5.51516 5.57803 5.61944 5.97602 6.23147 6.63479 6.71956 7.24763 7.27950 8.85797 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.005503 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.190137 B = 5086.777250 C = 5225.666300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.040 4.040 3 N -0.510 5.510 4 C 0.207 3.793 5 C 0.023 3.977 6 C -0.136 4.136 7 C -0.116 4.116 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.111 4.111 11 N -0.560 5.560 12 H 0.422 0.578 13 C 0.008 3.992 14 C 0.064 3.936 15 C -0.517 4.517 16 H 0.020 0.980 17 C 0.012 3.988 18 N -0.948 5.948 19 Si 0.951 3.049 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.242 1.242 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.048 0.952 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 12.705 -9.109 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.167 4.167 3 N -0.231 5.231 4 C -0.057 4.057 5 C 0.021 3.979 6 C -0.194 4.194 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.158 4.158 10 C -0.149 4.149 11 N -0.164 5.164 12 H 0.261 0.739 13 C -0.108 4.108 14 C 0.025 3.975 15 C -0.555 4.555 16 H 0.039 0.961 17 C -0.186 4.186 18 N -0.588 5.588 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.166 1.166 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.478 13.387 -9.013 19.803 hybrid contribution -0.021 -2.069 0.310 2.092 sum 11.456 11.318 -8.703 18.305 Atomic orbital electron populations 1.19847 0.87524 1.02148 1.01259 1.20688 0.97174 0.88345 1.10448 1.69910 1.00656 1.30662 1.21880 1.23569 0.95345 0.81694 1.05066 1.19812 0.88031 0.92738 0.97363 1.21952 0.98096 1.01789 0.97545 1.22541 0.99613 0.99310 0.94004 1.22484 0.98968 0.92556 1.01035 1.22329 0.98044 0.98986 0.96439 1.22203 1.02124 0.91390 0.99154 1.42946 1.07951 1.08007 1.57470 0.73863 1.21355 0.83868 0.97711 1.07879 1.18042 0.96815 0.86396 0.96239 1.21015 1.44313 0.97140 0.93063 0.96128 1.25946 0.93981 1.00253 0.98375 1.70063 1.45960 1.20445 1.22333 0.85649 0.78556 0.78426 0.80002 1.18930 1.20854 1.16576 0.93243 0.90824 0.91346 0.92508 0.88682 0.92446 0.94528 0.89866 0.88938 0.91129 0.89527 0.93467 0.89604 0.91932 0.94967 0.93440 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.99 10.22 71.23 0.73 -1.26 16 2 C -0.04 -1.76 7.09 41.39 0.29 -1.47 16 3 N -0.51 -21.05 9.82 -176.28 -1.73 -22.78 16 4 C 0.21 7.29 6.34 138.13 0.88 8.16 16 5 C 0.02 0.56 0.91 -52.20 -0.05 0.52 16 6 C -0.14 -2.52 8.02 71.98 0.58 -1.95 16 7 C -0.12 -2.72 5.90 31.70 0.19 -2.53 16 8 C -0.11 -2.00 6.91 31.91 0.22 -1.78 16 9 C -0.12 -2.40 6.83 31.67 0.22 -2.19 16 10 C -0.11 -2.58 6.07 31.32 0.19 -2.39 16 11 N -0.56 -20.57 5.99 -174.60 -1.05 -21.61 16 12 H 0.42 12.96 8.51 -92.71 -0.79 12.17 16 13 C 0.01 0.34 6.43 40.95 0.26 0.60 16 14 C 0.06 2.99 4.27 29.10 0.12 3.11 16 15 C -0.52 -29.77 9.65 25.60 0.25 -29.52 16 16 H 0.02 1.36 7.98 -2.91 -0.02 1.33 16 17 C 0.01 0.68 5.47 84.66 0.46 1.14 16 18 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 19 Si 0.95 42.60 27.47 68.60 1.88 44.48 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.07 2.63 7.40 -2.39 -0.02 2.61 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.01 7.67 -2.38 -0.02 0.99 16 29 H 0.04 1.10 7.85 -2.39 -0.02 1.09 16 30 H 0.08 1.65 7.84 -2.39 -0.02 1.63 16 31 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.09 1.58 7.67 -2.39 -0.02 1.56 16 36 H 0.06 1.86 6.66 -2.39 -0.02 1.84 16 37 H 0.03 1.40 7.57 -2.39 -0.02 1.39 16 38 H 0.05 2.18 6.58 -2.39 -0.02 2.16 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -70.58 311.27 3.93 -66.65 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.19 Total: 21.48 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 4.34 Total: -29.54 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -2.48 Total: -103.07 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -70.58 3.93 -66.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260544049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.037 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds