Wall clock time and date at job start Mon Mar 30 2020 05:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30498 * 125.65039 * 2 1 4 4 C 1.34129 * 109.25671 * 179.73373 * 3 2 1 5 5 C 1.34666 * 108.02165 * 0.40230 * 4 3 2 6 6 N 1.35047 * 125.65399 * 179.97438 * 2 1 3 7 7 C 1.46507 * 126.39328 * 0.02641 * 6 2 1 8 8 H 1.09005 * 109.46907 * 359.96887 * 7 6 2 9 9 C 1.53000 * 109.46678 * 239.97259 * 7 6 2 10 10 C 1.52995 * 109.47038 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46826 * 60.00059 * 10 9 7 12 12 C 1.53000 * 109.47264 * 299.99803 * 11 10 9 13 13 H 1.09005 * 109.47148 * 300.00462 * 12 11 10 14 14 C 1.52991 * 109.47333 * 180.02562 * 12 11 10 15 15 C 1.50702 * 109.47119 * 65.00039 * 14 12 11 16 16 H 1.07990 * 120.00293 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99772 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00166 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99850 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47325 * 59.99368 * 19 17 15 21 21 H 1.48503 * 109.47235 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46862 * 299.99452 * 19 17 15 23 23 C 1.52991 * 109.47392 * 119.97106 * 7 6 2 24 24 H 1.09000 * 109.46827 * 270.02260 * 1 2 3 25 25 H 1.09001 * 109.47579 * 30.02373 * 1 2 3 26 26 H 1.09000 * 109.47253 * 150.02525 * 1 2 3 27 27 H 1.08003 * 125.99108 * 180.25065 * 4 3 2 28 28 H 1.08002 * 126.59556 * 179.87817 * 5 4 3 29 29 H 1.08997 * 109.46997 * 299.99764 * 9 7 6 30 30 H 1.09001 * 109.46973 * 59.99902 * 9 7 6 31 31 H 1.08997 * 109.47347 * 299.99933 * 10 9 7 32 32 H 1.08999 * 109.47304 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.47109 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47260 * 59.99821 * 11 10 9 35 35 H 1.09003 * 109.47635 * 184.99947 * 14 12 11 36 36 H 1.08999 * 109.47154 * 305.00392 * 14 12 11 37 37 H 0.97003 * 119.99753 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.47578 * 299.99980 * 23 7 6 39 39 H 1.08997 * 109.47117 * 59.99724 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 0.0059 5 6 3.5926 -0.6642 0.0007 6 7 2.2941 -1.0973 0.0005 7 6 1.8425 -2.4911 0.0006 8 1 0.7529 -2.5199 0.0007 9 6 2.3716 -3.1984 1.2498 10 6 1.8996 -4.6537 1.2503 11 6 2.4280 -5.3616 0.0010 12 6 1.8989 -4.6543 -1.2482 13 1 0.8092 -4.6828 -1.2479 14 6 2.4267 -5.3625 -2.4974 15 6 1.8616 -6.7582 -2.5601 16 1 1.1933 -7.1055 -1.7862 17 6 2.1988 -7.5921 -3.6051 18 7 3.0131 -7.1694 -4.5474 19 14 1.4979 -9.3219 -3.6832 20 1 0.0157 -9.2532 -3.7428 21 1 2.0103 -10.0094 -4.8957 22 1 1.9101 -10.0781 -2.4734 23 6 2.3713 -3.1986 -1.2486 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 4.4098 1.3411 0.0112 28 1 4.4777 -1.2832 0.0014 29 1 3.4612 -3.1695 1.2497 30 1 1.9949 -2.6943 2.1398 31 1 0.8100 -4.6823 1.2507 32 1 2.2769 -5.1578 2.1401 33 1 2.0920 -6.3986 0.0016 34 1 3.5175 -5.3331 0.0007 35 1 2.1234 -4.8076 -3.3853 36 1 3.5146 -5.4127 -2.4543 37 1 3.2506 -7.7563 -5.2823 38 1 1.9944 -2.6947 -2.1387 39 1 3.4609 -3.1697 -1.2488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260584194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:21 Heat of formation + Delta-G solvation = 24.407481 kcal Electronic energy + Delta-G solvation = -18271.633463 eV Core-core repulsion = 15599.700504 eV Total energy + Delta-G solvation = -2671.932959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.04574 -38.40203 -34.09886 -32.75327 -31.68825 -31.25903 -29.08427 -26.87826 -26.71048 -23.48075 -22.72170 -21.50255 -20.59676 -19.30562 -19.02732 -16.90246 -16.33589 -15.32558 -15.04073 -14.49540 -14.29993 -14.07235 -13.60938 -13.43733 -13.02490 -12.99785 -12.55178 -12.43006 -12.29206 -12.02191 -11.88925 -11.33429 -11.03012 -10.88743 -10.76049 -10.56650 -10.29978 -10.27238 -9.83518 -9.72557 -9.57770 -9.09846 -8.96696 -8.39919 -8.20911 -6.04590 -4.07038 2.19887 2.90520 3.26399 3.28909 3.34367 3.35772 4.40901 4.55440 4.58493 4.84004 4.85455 5.11530 5.25293 5.31538 5.32836 5.45723 5.47109 5.54213 5.61121 5.68481 5.76906 5.82799 5.88621 5.91630 6.01055 6.16017 6.24513 6.42060 6.49029 6.56657 6.87191 6.90805 6.92499 7.04058 7.36265 7.59910 7.72873 7.94032 8.23387 8.35948 8.98980 9.57052 11.06659 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.004850 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.135922 B = 5771.373974 C = 5970.681006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.197 3.803 3 N -0.499 5.499 4 C -0.038 4.038 5 C -0.049 4.049 6 N -0.443 5.443 7 C 0.130 3.870 8 H 0.099 0.901 9 C -0.120 4.120 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.075 4.075 13 H 0.059 0.941 14 C 0.029 3.971 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.119 4.119 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.064 0.936 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 9.509 11.028 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 N -0.219 5.219 4 C -0.186 4.186 5 C -0.183 4.183 6 N -0.125 5.125 7 C 0.028 3.972 8 H 0.117 0.883 9 C -0.159 4.159 10 C -0.155 4.155 11 C -0.145 4.145 12 C -0.095 4.095 13 H 0.078 0.922 14 C -0.008 4.008 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.157 4.157 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.183 0.817 28 H 0.187 0.813 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.453 10.117 10.855 15.040 hybrid contribution 0.196 -1.820 -0.207 1.843 sum -2.256 8.296 10.648 13.686 Atomic orbital electron populations 1.20164 0.85405 1.03937 1.03171 1.23229 0.95615 0.81641 1.06016 1.70186 1.02295 1.28498 1.20899 1.22193 0.94686 0.92771 1.08997 1.22611 0.87572 0.96549 1.11545 1.45705 1.06337 1.07536 1.52902 1.21742 1.00350 0.77121 0.98001 0.88338 1.21851 1.01545 0.96660 0.95808 1.21583 1.00844 0.93671 0.99436 1.21569 1.00213 1.00236 0.92521 1.21192 0.99641 0.90932 0.97692 0.92228 1.19106 0.96348 0.94659 0.90719 1.21172 1.28223 0.98152 1.08072 0.92596 1.25017 0.95193 0.98440 0.95737 1.69952 1.34954 1.36488 1.12043 0.86696 0.79407 0.84710 0.77412 1.20269 1.21317 1.20252 1.22033 1.01354 0.97450 0.94853 0.90506 0.89408 0.90762 0.81715 0.81321 0.91335 0.92110 0.92027 0.91921 0.90573 0.92574 0.96653 0.96550 0.92932 0.91754 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.03 36.00 0.36 -0.36 16 2 C 0.20 2.82 7.90 -155.42 -1.23 1.59 16 3 N -0.50 -7.93 11.25 -10.82 -0.12 -8.05 16 4 C -0.04 -0.54 11.87 -17.81 -0.21 -0.76 16 5 C -0.05 -0.67 10.60 -16.56 -0.18 -0.84 16 6 N -0.44 -6.18 2.61 -106.83 -0.28 -6.45 16 7 C 0.13 1.72 2.79 -67.93 -0.19 1.53 16 8 H 0.10 1.21 6.67 -51.93 -0.35 0.87 16 9 C -0.12 -1.47 5.26 -26.73 -0.14 -1.61 16 10 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 11 C -0.11 -1.79 5.01 -26.73 -0.13 -1.92 16 12 C -0.08 -1.39 2.14 -90.60 -0.19 -1.58 16 13 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 15 C -0.52 -13.84 8.41 -34.44 -0.29 -14.12 16 16 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 C -0.12 -1.89 4.55 -26.71 -0.12 -2.01 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.71 7.08 -51.93 -0.37 0.34 16 27 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 28 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.07 0.85 7.95 -51.93 -0.41 0.43 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.39 6.95 -51.93 -0.36 1.03 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.08 7.95 -51.93 -0.41 0.66 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -30.51 311.89 -9.17 -39.67 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.48 Total: -0.62 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -2.70 Total: -19.68 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.34 Total: -40.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.51 -9.17 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.079 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds