Wall clock time and date at job start Mon Mar 30 2020 05:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30498 * 125.65039 * 2 1 4 4 C 1.34129 * 109.25671 * 179.73373 * 3 2 1 5 5 C 1.34666 * 108.02165 * 0.40230 * 4 3 2 6 6 N 1.35047 * 125.65399 * 179.97438 * 2 1 3 7 7 C 1.46507 * 126.39328 * 0.02641 * 6 2 1 8 8 H 1.09005 * 109.46907 * 359.96887 * 7 6 2 9 9 C 1.53000 * 109.46678 * 239.97259 * 7 6 2 10 10 C 1.52995 * 109.47038 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46826 * 60.00059 * 10 9 7 12 12 C 1.53000 * 109.47264 * 299.99803 * 11 10 9 13 13 H 1.09005 * 109.47148 * 300.00462 * 12 11 10 14 14 C 1.52991 * 109.47333 * 180.02562 * 12 11 10 15 15 C 1.50702 * 109.47119 * 65.00039 * 14 12 11 16 16 H 1.07990 * 120.00293 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99772 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00166 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99850 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47325 * 59.99368 * 19 17 15 21 21 H 1.48503 * 109.47235 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46862 * 299.99452 * 19 17 15 23 23 C 1.52991 * 109.47392 * 119.97106 * 7 6 2 24 24 H 1.09000 * 109.46827 * 270.02260 * 1 2 3 25 25 H 1.09001 * 109.47579 * 30.02373 * 1 2 3 26 26 H 1.09000 * 109.47253 * 150.02525 * 1 2 3 27 27 H 1.08003 * 125.99108 * 180.25065 * 4 3 2 28 28 H 1.08002 * 126.59556 * 179.87817 * 5 4 3 29 29 H 1.08997 * 109.46997 * 299.99764 * 9 7 6 30 30 H 1.09001 * 109.46973 * 59.99902 * 9 7 6 31 31 H 1.08997 * 109.47347 * 299.99933 * 10 9 7 32 32 H 1.08999 * 109.47304 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.47109 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47260 * 59.99821 * 11 10 9 35 35 H 1.09003 * 109.47635 * 184.99947 * 14 12 11 36 36 H 1.08999 * 109.47154 * 305.00392 * 14 12 11 37 37 H 0.97003 * 119.99753 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.47578 * 299.99980 * 23 7 6 39 39 H 1.08997 * 109.47117 * 59.99724 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 0.0059 5 6 3.5926 -0.6642 0.0007 6 7 2.2941 -1.0973 0.0005 7 6 1.8425 -2.4911 0.0006 8 1 0.7529 -2.5199 0.0007 9 6 2.3716 -3.1984 1.2498 10 6 1.8996 -4.6537 1.2503 11 6 2.4280 -5.3616 0.0010 12 6 1.8989 -4.6543 -1.2482 13 1 0.8092 -4.6828 -1.2479 14 6 2.4267 -5.3625 -2.4974 15 6 1.8616 -6.7582 -2.5601 16 1 1.1933 -7.1055 -1.7862 17 6 2.1988 -7.5921 -3.6051 18 7 3.0131 -7.1694 -4.5474 19 14 1.4979 -9.3219 -3.6832 20 1 0.0157 -9.2532 -3.7428 21 1 2.0103 -10.0094 -4.8957 22 1 1.9101 -10.0781 -2.4734 23 6 2.3713 -3.1986 -1.2486 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 4.4098 1.3411 0.0112 28 1 4.4777 -1.2832 0.0014 29 1 3.4612 -3.1695 1.2497 30 1 1.9949 -2.6943 2.1398 31 1 0.8100 -4.6823 1.2507 32 1 2.2769 -5.1578 2.1401 33 1 2.0920 -6.3986 0.0016 34 1 3.5175 -5.3331 0.0007 35 1 2.1234 -4.8076 -3.3853 36 1 3.5146 -5.4127 -2.4543 37 1 3.2506 -7.7563 -5.2823 38 1 1.9944 -2.6947 -2.1387 39 1 3.4609 -3.1697 -1.2488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:21 Heat of formation + Delta-G solvation = 8.925534 kcal Electronic energy + Delta-G solvation = -18272.304810 eV Core-core repulsion = 15599.700504 eV Total energy + Delta-G solvation = -2672.604307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.10328 -39.67800 -35.70370 -34.31393 -32.77695 -32.60600 -30.34092 -28.57646 -27.70879 -25.18778 -23.98607 -22.65045 -21.91415 -20.40717 -20.33651 -18.44683 -17.96162 -16.54646 -16.39423 -16.09878 -15.44482 -15.27755 -14.89633 -14.58337 -14.34308 -14.11204 -13.83412 -13.69889 -13.48192 -13.32710 -13.14915 -12.93762 -12.56604 -12.53331 -12.17930 -12.03995 -11.81791 -11.71053 -11.24843 -11.14185 -11.01206 -10.77718 -10.52897 -10.33643 -9.25134 -8.17743 -6.27424 1.14726 1.41086 1.43126 1.50760 1.85732 2.19446 2.42052 3.16209 3.50379 3.63926 3.72777 3.83262 4.02800 4.11663 4.25275 4.35298 4.49792 4.51446 4.53981 4.56908 4.63973 4.73324 4.84549 4.90631 5.00387 5.04095 5.07888 5.10661 5.19102 5.37458 5.42149 5.48453 5.51757 5.57345 5.79687 5.86737 5.88341 6.27193 6.32906 6.89246 7.17437 7.41616 8.94101 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.004850 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.135922 B = 5771.373974 C = 5970.681006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.189 3.811 3 N -0.532 5.532 4 C -0.053 4.053 5 C -0.057 4.057 6 N -0.447 5.447 7 C 0.139 3.861 8 H 0.115 0.885 9 C -0.113 4.113 10 C -0.106 4.106 11 C -0.104 4.104 12 C -0.066 4.066 13 H 0.064 0.936 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.938 5.938 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.109 4.109 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.183 0.817 28 H 0.185 0.815 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.046 0.954 35 H -0.018 1.018 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.048 0.952 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 9.168 13.053 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 N -0.252 5.252 4 C -0.200 4.200 5 C -0.191 4.191 6 N -0.129 5.129 7 C 0.037 3.963 8 H 0.133 0.867 9 C -0.151 4.151 10 C -0.144 4.144 11 C -0.142 4.142 12 C -0.085 4.085 13 H 0.082 0.918 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.578 5.578 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.148 4.148 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.201 0.799 28 H 0.202 0.798 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.000 1.000 36 H 0.005 0.995 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.744 9.783 12.899 16.617 hybrid contribution 0.636 -1.669 -0.889 1.996 sum -3.108 8.114 12.010 14.823 Atomic orbital electron populations 1.20328 0.83071 1.04662 1.04653 1.23923 0.97054 0.81339 1.04991 1.70192 1.03204 1.29586 1.22255 1.22607 0.94929 0.93511 1.08928 1.22940 0.88120 0.96738 1.11258 1.45754 1.06470 1.07593 1.53090 1.21646 1.01158 0.76732 0.96786 0.86693 1.21803 1.01520 0.96086 0.95730 1.21489 1.01577 0.93595 0.97733 1.21478 0.99669 0.99476 0.93555 1.20985 0.99598 0.92092 0.95792 0.91800 1.19011 0.94536 0.94457 0.92498 1.21623 1.27848 0.99090 1.08018 0.91550 1.25958 0.95582 1.02962 0.95453 1.70105 1.36702 1.38135 1.12891 0.85583 0.78983 0.79418 0.77583 1.19160 1.21428 1.19015 1.21835 1.00797 0.96014 0.96107 0.88555 0.88991 0.89733 0.79948 0.79815 0.91499 0.90159 0.90675 0.89929 0.92396 0.93526 0.99961 0.99457 0.93030 0.93358 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.03 71.23 0.71 -0.57 16 2 C 0.19 5.09 7.90 138.13 1.09 6.18 16 3 N -0.53 -16.35 11.25 -188.13 -2.12 -18.46 16 4 C -0.05 -1.44 11.87 83.52 0.99 -0.45 16 5 C -0.06 -1.48 10.60 83.09 0.88 -0.60 16 6 N -0.45 -11.67 2.61 -491.91 -1.28 -12.95 16 7 C 0.14 3.37 2.79 44.99 0.13 3.49 16 8 H 0.12 2.45 6.67 -2.38 -0.02 2.44 16 9 C -0.11 -2.40 5.26 30.59 0.16 -2.24 16 10 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 11 C -0.10 -3.34 5.01 30.60 0.15 -3.18 16 12 C -0.07 -2.41 2.14 -10.78 -0.02 -2.43 16 13 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 14 C 0.03 1.62 4.45 29.85 0.13 1.75 16 15 C -0.53 -28.54 8.41 25.60 0.22 -28.32 16 16 H 0.07 3.37 7.06 -2.92 -0.02 3.35 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 18 N -0.94 -56.68 13.29 21.45 0.28 -56.40 16 19 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.11 -3.45 4.55 30.61 0.14 -3.31 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.08 1.39 7.08 -2.39 -0.02 1.37 16 27 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.18 4.03 8.06 -2.91 -0.02 4.00 16 29 H 0.07 1.47 7.95 -2.39 -0.02 1.45 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 2.06 6.95 -2.39 -0.02 2.04 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.89 7.95 -2.39 -0.02 1.87 16 Total: -1.00 -67.01 311.89 5.14 -61.87 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.00 Total: 12.28 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 5.23 Total: -31.54 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -3.11 Total: -87.81 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.01 5.14 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.794 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds