Wall clock time and date at job start Mon Mar 30 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30495 * 125.64440 * 2 1 4 4 C 1.34132 * 109.25353 * 180.02562 * 3 2 1 5 5 C 1.34665 * 108.02142 * 359.97438 * 4 3 2 6 6 N 1.35035 * 125.65181 * 179.69013 * 2 1 3 7 7 C 1.46507 * 126.39910 * 359.97438 * 6 2 1 8 8 H 1.08997 * 109.46899 * 359.83323 * 7 6 2 9 9 C 1.52991 * 109.47124 * 239.82721 * 7 6 2 10 10 C 1.53001 * 109.47502 * 299.99935 * 9 7 6 11 11 C 1.52999 * 109.46949 * 300.00338 * 10 9 7 12 12 C 1.53004 * 109.47287 * 59.99799 * 11 10 9 13 13 H 1.08996 * 109.46757 * 60.00167 * 12 11 10 14 14 C 1.53002 * 109.47086 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47456 * 295.00402 * 14 12 11 16 16 H 1.08005 * 119.99941 * 359.97438 * 15 14 12 17 17 C 1.37870 * 120.00324 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00615 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99830 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46789 * 90.00238 * 19 17 15 21 21 H 1.48502 * 109.47298 * 210.00279 * 19 17 15 22 22 H 1.48500 * 109.47179 * 330.00720 * 19 17 15 23 23 C 1.52992 * 109.46744 * 299.99867 * 12 11 10 24 24 H 1.08999 * 109.47300 * 90.03164 * 1 2 3 25 25 H 1.09010 * 109.46834 * 210.02755 * 1 2 3 26 26 H 1.08996 * 109.47189 * 330.02325 * 1 2 3 27 27 H 1.08003 * 125.98538 * 179.97438 * 4 3 2 28 28 H 1.07997 * 126.59544 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.47370 * 60.00075 * 9 7 6 30 30 H 1.09003 * 109.47346 * 180.02562 * 9 7 6 31 31 H 1.08993 * 109.46866 * 60.00281 * 10 9 7 32 32 H 1.09000 * 109.47500 * 179.97438 * 10 9 7 33 33 H 1.09008 * 109.47124 * 179.97438 * 11 10 9 34 34 H 1.09003 * 109.47366 * 299.99529 * 11 10 9 35 35 H 1.09006 * 109.46678 * 55.00048 * 14 12 11 36 36 H 1.09002 * 109.46848 * 174.99640 * 14 12 11 37 37 H 0.96994 * 120.00238 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47739 * 299.99699 * 23 12 11 39 39 H 1.09005 * 109.46854 * 179.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0006 5 6 3.5926 -0.6641 -0.0004 6 7 2.2941 -1.0972 0.0059 7 6 1.8426 -2.4910 0.0140 8 1 0.7530 -2.5199 0.0176 9 6 2.3756 -3.1925 1.2648 10 6 3.9050 -3.1519 1.2597 11 6 4.4300 -3.8653 0.0121 12 6 3.8970 -3.1637 -1.2388 13 1 4.2330 -2.1268 -1.2447 14 6 4.4225 -3.8767 -2.4863 15 6 5.9207 -3.7304 -2.5550 16 1 6.4457 -3.1832 -1.7859 17 6 6.6213 -4.2942 -3.6001 18 7 7.9288 -4.1661 -3.6603 19 14 5.7133 -5.2400 -4.9307 20 1 5.3231 -4.3097 -6.0206 21 1 6.5991 -6.2991 -5.4773 22 1 4.4957 -5.8628 -4.3520 23 6 2.3676 -3.2043 -1.2336 24 1 -0.3634 -0.0006 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8902 0.5134 27 1 4.4097 1.3413 -0.0011 28 1 4.4777 -1.2831 -0.0003 29 1 2.0016 -2.6843 2.1537 30 1 2.0401 -4.2296 1.2706 31 1 4.2409 -2.1151 1.2538 32 1 4.2848 -3.6513 2.1511 33 1 5.5196 -3.8360 0.0083 34 1 4.0941 -4.9022 0.0181 35 1 4.1625 -4.9341 -2.4370 36 1 3.9729 -3.4331 -3.3748 37 1 8.4217 -4.5631 -4.3954 38 1 2.0316 -4.2412 -1.2277 39 1 1.9879 -2.7041 -2.1245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:26 Heat of formation + Delta-G solvation = 34.172397 kcal Electronic energy + Delta-G solvation = -18894.741360 eV Core-core repulsion = 16223.231839 eV Total energy + Delta-G solvation = -2671.509521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.31369 -39.66653 -35.61823 -34.12491 -32.97253 -32.45362 -30.73787 -29.10910 -27.64911 -24.84643 -23.99870 -22.49669 -22.13367 -20.78408 -20.20540 -18.89351 -17.12200 -16.74067 -16.54519 -16.26875 -15.41836 -15.18005 -14.84620 -14.63246 -14.44272 -14.02546 -13.99866 -13.70161 -13.32733 -13.22593 -13.07288 -13.02392 -12.88363 -12.42634 -12.32415 -12.05988 -11.73348 -11.59707 -11.07095 -11.02455 -10.84146 -10.70824 -10.63647 -10.33899 -9.15698 -8.27467 -6.29472 1.19163 1.33522 1.34225 1.45675 1.95531 2.21852 2.35267 3.08031 3.60947 3.67590 3.74939 3.82464 3.98994 4.14695 4.27316 4.37984 4.50403 4.51460 4.57255 4.61167 4.66965 4.79111 4.87719 4.93226 4.98583 5.04635 5.07357 5.08977 5.14773 5.28620 5.36964 5.43976 5.49501 5.55731 5.73050 5.74006 5.87536 6.32326 6.44098 6.78074 7.21418 7.34242 8.89148 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.006361 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.059624 B = 4400.844501 C = 4513.352203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.190 3.810 3 N -0.532 5.532 4 C -0.065 4.065 5 C -0.055 4.055 6 N -0.439 5.439 7 C 0.132 3.868 8 H 0.134 0.866 9 C -0.117 4.117 10 C -0.139 4.139 11 C -0.101 4.101 12 C -0.090 4.090 13 H 0.064 0.936 14 C -0.005 4.005 15 C -0.516 4.516 16 H 0.035 0.965 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.945 3.055 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.244 1.244 23 C -0.120 4.120 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.184 0.816 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.006 0.994 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.899 1.117 9.702 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 N -0.253 5.253 4 C -0.212 4.212 5 C -0.188 4.188 6 N -0.122 5.122 7 C 0.031 3.969 8 H 0.152 0.848 9 C -0.154 4.154 10 C -0.176 4.176 11 C -0.138 4.138 12 C -0.108 4.108 13 H 0.082 0.918 14 C -0.042 4.042 15 C -0.554 4.554 16 H 0.054 0.946 17 C -0.194 4.194 18 N -0.594 5.594 19 Si 0.769 3.231 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.168 1.168 23 C -0.158 4.158 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.188 0.812 28 H 0.201 0.799 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.095 1.716 9.616 20.564 hybrid contribution 1.339 -1.008 -1.010 1.957 sum -16.757 0.708 8.606 18.851 Atomic orbital electron populations 1.20334 0.82279 1.05192 1.04424 1.24042 0.97192 0.81192 1.04779 1.70148 1.02715 1.30014 1.22380 1.22498 0.95060 0.93660 1.09952 1.23156 0.88987 0.96292 1.10397 1.45600 1.05563 1.07856 1.53145 1.21805 1.01303 0.76988 0.96833 0.84821 1.21829 0.95385 1.02201 0.96018 1.21953 0.96305 1.01500 0.97841 1.21421 0.99603 0.99259 0.93543 1.21326 0.94372 0.99966 0.95177 0.91821 1.19556 0.93940 0.96024 0.94687 1.21454 0.92608 1.32979 1.08394 0.94629 1.25976 0.95456 0.97377 1.00639 1.70069 1.08318 1.47529 1.33524 0.85740 0.79414 0.78726 0.79229 1.19922 1.21192 1.16750 1.21932 0.95476 1.01851 0.96528 0.89386 0.88302 0.88965 0.81246 0.79917 0.90439 0.87831 0.91594 0.90901 0.94280 0.91897 0.96164 0.97588 0.92763 0.88347 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.03 71.24 0.71 -0.33 16 2 C 0.19 5.15 7.90 138.13 1.09 6.25 16 3 N -0.53 -17.80 11.25 -188.13 -2.12 -19.92 16 4 C -0.06 -2.17 11.87 83.52 0.99 -1.18 16 5 C -0.06 -1.76 7.25 83.08 0.60 -1.16 16 6 N -0.44 -11.76 2.61 -491.91 -1.28 -13.04 16 7 C 0.13 2.75 3.36 44.99 0.15 2.90 16 8 H 0.13 1.82 6.66 -2.39 -0.02 1.80 16 9 C -0.12 -2.20 5.63 30.59 0.17 -2.03 16 10 C -0.14 -3.52 5.57 30.59 0.17 -3.35 16 11 C -0.10 -3.32 4.82 30.60 0.15 -3.18 16 12 C -0.09 -3.23 1.79 -10.79 -0.02 -3.25 16 13 H 0.06 2.53 4.25 -2.39 -0.01 2.52 16 14 C 0.00 -0.21 3.52 29.85 0.10 -0.11 16 15 C -0.52 -29.20 8.96 25.60 0.23 -28.97 16 16 H 0.04 2.21 7.30 -2.91 -0.02 2.19 16 17 C 0.00 0.10 5.47 84.65 0.46 0.56 16 18 N -0.95 -60.11 13.96 21.44 0.30 -59.81 16 19 Si 0.94 44.42 27.47 68.60 1.88 46.31 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 23 C -0.12 -3.15 4.91 30.59 0.15 -3.00 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.10 1.02 7.06 -2.38 -0.02 1.01 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.17 5.16 8.06 -2.91 -0.02 5.14 16 28 H 0.18 6.19 4.06 -2.91 -0.01 6.18 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.85 4.25 -2.39 -0.01 1.84 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.57 6.95 -2.38 -0.02 1.56 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 36 H 0.01 0.27 7.57 -2.39 -0.02 0.25 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -71.27 293.91 4.73 -66.54 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.98 Total: 16.77 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 4.97 Total: -36.85 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -3.10 Total: -92.76 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Total: -71.27 4.73 -66.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.713 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds