Wall clock time and date at job start Mon Mar 30 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30497 * 125.65274 * 2 1 4 4 C 1.34126 * 109.25458 * 180.02562 * 3 2 1 5 5 C 1.34661 * 108.02341 * 359.72967 * 4 3 2 6 6 N 1.35043 * 125.64585 * 180.02562 * 2 1 3 7 7 C 1.46497 * 126.40016 * 359.96828 * 6 2 1 8 8 H 1.09002 * 109.47107 * 0.02562 * 7 6 2 9 9 C 1.53009 * 109.47047 * 119.99641 * 7 6 2 10 10 C 1.52998 * 109.46835 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47483 * 300.00288 * 10 9 7 12 12 C 1.52992 * 109.47176 * 59.99951 * 11 10 9 13 13 H 1.08997 * 109.47536 * 60.00380 * 12 11 10 14 14 C 1.53000 * 109.47422 * 180.02562 * 12 11 10 15 15 C 1.50708 * 109.46973 * 295.00039 * 14 12 11 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 12 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.53001 * 109.47221 * 239.99553 * 7 6 2 24 24 H 1.09000 * 109.46759 * 269.96450 * 1 2 3 25 25 H 1.09005 * 109.46538 * 29.95812 * 1 2 3 26 26 H 1.08990 * 109.47385 * 149.95965 * 1 2 3 27 27 H 1.08007 * 125.98117 * 179.97438 * 4 3 2 28 28 H 1.07995 * 126.59304 * 180.27911 * 5 4 3 29 29 H 1.08991 * 109.47010 * 300.00087 * 9 7 6 30 30 H 1.09002 * 109.46849 * 60.00232 * 9 7 6 31 31 H 1.09002 * 109.47119 * 60.00511 * 10 9 7 32 32 H 1.08998 * 109.46788 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.47126 * 300.00220 * 11 10 9 34 34 H 1.08994 * 109.47143 * 180.02562 * 11 10 9 35 35 H 1.08994 * 109.48028 * 175.00097 * 14 12 11 36 36 H 1.09000 * 109.47206 * 54.99951 * 14 12 11 37 37 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.47083 * 60.00114 * 23 7 6 39 39 H 1.09001 * 109.46948 * 300.00303 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6817 -0.0006 5 6 3.5926 -0.6643 0.0051 6 7 2.2940 -1.0974 -0.0005 7 6 1.8425 -2.4910 -0.0005 8 1 0.7528 -2.5199 -0.0004 9 6 2.3708 -3.1984 -1.2502 10 6 1.8997 -4.6540 -1.2497 11 6 2.4296 -5.3613 -0.0009 12 6 1.9013 -4.6540 1.2487 13 1 0.8118 -4.6833 1.2495 14 6 2.4318 -5.3609 2.4976 15 6 1.8686 -6.7574 2.5618 16 1 1.1997 -7.1058 1.7889 17 6 2.2083 -7.5903 3.6067 18 7 1.7172 -8.8091 3.6625 19 14 3.3659 -6.9877 4.9432 20 1 4.7667 -7.3025 4.5637 21 1 3.0367 -7.6624 6.2245 22 1 3.2147 -5.5192 5.1040 23 6 2.3720 -3.1987 1.2484 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3632 0.8904 -0.5132 26 1 -0.3633 -0.8895 -0.5144 27 1 4.4099 1.3410 -0.0011 28 1 4.4776 -1.2833 0.0105 29 1 1.9935 -2.6942 -2.1398 30 1 3.4604 -3.1695 -1.2506 31 1 0.8100 -4.6833 -1.2490 32 1 2.2756 -5.1578 -2.1402 33 1 3.5192 -5.3321 -0.0016 34 1 2.0943 -6.3984 -0.0009 35 1 2.1291 -4.8060 3.3855 36 1 3.5198 -5.4097 2.4530 37 1 1.9559 -9.3949 4.3978 38 1 1.9957 -2.6949 2.1386 39 1 3.4616 -3.1698 1.2478 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260584202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:29 Heat of formation + Delta-G solvation = 28.009938 kcal Electronic energy + Delta-G solvation = -18322.892931 eV Core-core repulsion = 15651.116186 eV Total energy + Delta-G solvation = -2671.776745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10894 -38.49873 -34.17673 -32.73961 -31.73976 -31.46567 -29.19285 -27.34885 -26.80574 -23.33416 -22.71073 -21.52410 -20.53972 -19.34033 -19.10848 -16.94670 -16.79966 -15.39323 -15.07491 -14.45302 -14.31599 -14.12222 -13.59468 -13.49043 -13.13119 -12.98052 -12.79786 -12.52785 -12.41016 -12.27026 -11.95369 -11.61129 -11.11057 -10.94866 -10.75319 -10.57509 -10.37331 -9.99119 -9.89356 -9.75068 -9.69870 -9.17729 -9.12657 -8.58820 -8.26948 -6.09463 -4.07346 2.13615 2.83995 3.20791 3.26153 3.34596 3.37584 4.40392 4.49883 4.51900 4.76832 4.78909 5.05003 5.18466 5.25449 5.27088 5.38743 5.45267 5.48852 5.52692 5.62430 5.69050 5.75116 5.81586 5.85120 5.95542 6.10069 6.15116 6.33646 6.39403 6.48808 6.72130 6.77329 6.84209 6.94362 7.18493 7.29886 7.33620 7.73418 8.17679 8.47706 8.94926 9.53371 11.03718 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.005378 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.668483 B = 5205.619223 C = 5567.382072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.198 3.802 3 N -0.499 5.499 4 C -0.037 4.037 5 C -0.050 4.050 6 N -0.444 5.444 7 C 0.131 3.869 8 H 0.100 0.900 9 C -0.121 4.121 10 C -0.117 4.117 11 C -0.109 4.109 12 C -0.067 4.067 13 H 0.066 0.934 14 C -0.008 4.008 15 C -0.517 4.517 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.267 1.267 23 C -0.121 4.121 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 13.547 -9.152 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.064 4.064 3 N -0.219 5.219 4 C -0.186 4.186 5 C -0.184 4.184 6 N -0.125 5.125 7 C 0.028 3.972 8 H 0.118 0.882 9 C -0.160 4.160 10 C -0.155 4.155 11 C -0.147 4.147 12 C -0.086 4.086 13 H 0.084 0.916 14 C -0.046 4.046 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.160 4.160 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.183 0.817 28 H 0.186 0.814 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.395 14.046 -9.047 16.712 hybrid contribution 1.146 -0.681 0.851 1.582 sum 1.541 13.365 -8.196 15.753 Atomic orbital electron populations 1.20172 0.85338 1.03677 1.03511 1.23249 0.95643 0.81609 1.05877 1.70193 1.02286 1.28483 1.20898 1.22196 0.94700 0.92761 1.08895 1.22601 0.87557 0.96556 1.11706 1.45701 1.06338 1.07516 1.52994 1.21719 1.00467 0.77129 0.97858 0.88182 1.21870 1.01542 0.96732 0.95813 1.21572 1.00996 0.93517 0.99422 1.21574 1.00076 1.00663 0.92357 1.20984 1.00116 0.90627 0.96875 0.91576 1.19606 0.95949 0.96445 0.92562 1.21104 1.28919 0.95793 1.09652 0.90783 1.25013 0.95856 0.94726 0.97807 1.69905 1.44868 1.07075 1.32348 0.86830 0.81549 0.79476 0.81725 1.20342 1.21393 1.19123 1.22047 1.01311 0.97457 0.95139 0.90224 0.89452 0.90900 0.81714 0.81352 0.91996 0.91352 0.91885 0.91757 0.92639 0.90036 0.96654 0.97040 0.92735 0.91723 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.03 36.01 0.36 -0.33 16 2 C 0.20 2.73 7.90 -155.42 -1.23 1.50 16 3 N -0.50 -7.68 11.25 -10.82 -0.12 -7.80 16 4 C -0.04 -0.51 11.87 -17.82 -0.21 -0.72 16 5 C -0.05 -0.65 10.60 -16.56 -0.18 -0.83 16 6 N -0.44 -5.90 2.61 -106.83 -0.28 -6.18 16 7 C 0.13 1.64 2.79 -67.93 -0.19 1.45 16 8 H 0.10 1.17 6.67 -51.93 -0.35 0.83 16 9 C -0.12 -1.42 5.27 -26.73 -0.14 -1.56 16 10 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 11 C -0.11 -1.77 5.01 -26.74 -0.13 -1.91 16 12 C -0.07 -1.18 2.14 -90.65 -0.19 -1.37 16 13 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 14 C -0.01 -0.19 3.52 -27.88 -0.10 -0.28 16 15 C -0.52 -13.91 8.96 -34.44 -0.31 -14.22 16 16 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 19 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 C -0.12 -1.81 4.53 -26.76 -0.12 -1.93 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.63 7.08 -51.93 -0.37 0.26 16 27 H 0.17 1.81 8.06 -52.48 -0.42 1.38 16 28 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.81 7.96 -51.93 -0.41 0.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 35 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 36 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -30.91 308.28 -8.79 -39.70 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.45 Total: -0.61 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.70 Total: -20.03 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.37 Total: -40.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.91 -8.79 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.710 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds