Wall clock time and date at job start Mon Mar 30 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30497 * 125.65274 * 2 1 4 4 C 1.34126 * 109.25458 * 180.02562 * 3 2 1 5 5 C 1.34661 * 108.02341 * 359.72967 * 4 3 2 6 6 N 1.35043 * 125.64585 * 180.02562 * 2 1 3 7 7 C 1.46497 * 126.40016 * 359.96828 * 6 2 1 8 8 H 1.09002 * 109.47107 * 0.02562 * 7 6 2 9 9 C 1.53009 * 109.47047 * 119.99641 * 7 6 2 10 10 C 1.52998 * 109.46835 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47483 * 300.00288 * 10 9 7 12 12 C 1.52992 * 109.47176 * 59.99951 * 11 10 9 13 13 H 1.08997 * 109.47536 * 60.00380 * 12 11 10 14 14 C 1.53000 * 109.47422 * 180.02562 * 12 11 10 15 15 C 1.50708 * 109.46973 * 295.00039 * 14 12 11 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 12 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.53001 * 109.47221 * 239.99553 * 7 6 2 24 24 H 1.09000 * 109.46759 * 269.96450 * 1 2 3 25 25 H 1.09005 * 109.46538 * 29.95812 * 1 2 3 26 26 H 1.08990 * 109.47385 * 149.95965 * 1 2 3 27 27 H 1.08007 * 125.98117 * 179.97438 * 4 3 2 28 28 H 1.07995 * 126.59304 * 180.27911 * 5 4 3 29 29 H 1.08991 * 109.47010 * 300.00087 * 9 7 6 30 30 H 1.09002 * 109.46849 * 60.00232 * 9 7 6 31 31 H 1.09002 * 109.47119 * 60.00511 * 10 9 7 32 32 H 1.08998 * 109.46788 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.47126 * 300.00220 * 11 10 9 34 34 H 1.08994 * 109.47143 * 180.02562 * 11 10 9 35 35 H 1.08994 * 109.48028 * 175.00097 * 14 12 11 36 36 H 1.09000 * 109.47206 * 54.99951 * 14 12 11 37 37 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.47083 * 60.00114 * 23 7 6 39 39 H 1.09001 * 109.46948 * 300.00303 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6817 -0.0006 5 6 3.5926 -0.6643 0.0051 6 7 2.2940 -1.0974 -0.0005 7 6 1.8425 -2.4910 -0.0005 8 1 0.7528 -2.5199 -0.0004 9 6 2.3708 -3.1984 -1.2502 10 6 1.8997 -4.6540 -1.2497 11 6 2.4296 -5.3613 -0.0009 12 6 1.9013 -4.6540 1.2487 13 1 0.8118 -4.6833 1.2495 14 6 2.4318 -5.3609 2.4976 15 6 1.8686 -6.7574 2.5618 16 1 1.1997 -7.1058 1.7889 17 6 2.2083 -7.5903 3.6067 18 7 1.7172 -8.8091 3.6625 19 14 3.3659 -6.9877 4.9432 20 1 4.7667 -7.3025 4.5637 21 1 3.0367 -7.6624 6.2245 22 1 3.2147 -5.5192 5.1040 23 6 2.3720 -3.1987 1.2484 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3632 0.8904 -0.5132 26 1 -0.3633 -0.8895 -0.5144 27 1 4.4099 1.3410 -0.0011 28 1 4.4776 -1.2833 0.0105 29 1 1.9935 -2.6942 -2.1398 30 1 3.4604 -3.1695 -1.2506 31 1 0.8100 -4.6833 -1.2490 32 1 2.2756 -5.1578 -2.1402 33 1 3.5192 -5.3321 -0.0016 34 1 2.0943 -6.3984 -0.0009 35 1 2.1291 -4.8060 3.3855 36 1 3.5198 -5.4097 2.4530 37 1 1.9559 -9.3949 4.3978 38 1 1.9957 -2.6949 2.1386 39 1 3.4616 -3.1698 1.2478 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:29 Heat of formation + Delta-G solvation = 11.657128 kcal Electronic energy + Delta-G solvation = -18323.602042 eV Core-core repulsion = 15651.116186 eV Total energy + Delta-G solvation = -2672.485856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.09874 -39.71228 -35.69194 -34.32632 -32.98244 -32.60472 -30.40500 -28.96650 -27.70641 -24.86033 -23.96892 -22.62527 -21.83612 -20.39360 -20.35870 -18.87159 -17.97435 -16.45997 -16.29721 -16.15582 -15.42188 -15.33578 -14.84542 -14.74883 -14.50494 -14.23066 -13.95703 -13.69987 -13.56338 -13.37771 -13.13638 -13.07199 -12.58204 -12.25349 -12.20219 -11.95833 -11.78533 -11.75007 -11.28008 -11.20378 -11.02383 -10.80165 -10.73222 -10.36307 -9.24134 -8.27256 -6.28983 1.15515 1.33518 1.36039 1.46326 1.85467 2.20492 2.35595 3.08442 3.50048 3.64279 3.71039 3.82965 4.02834 4.09187 4.22289 4.33819 4.48140 4.50795 4.53224 4.56281 4.62357 4.72582 4.83355 4.88757 5.00096 5.00254 5.03116 5.05984 5.11722 5.25738 5.36235 5.45338 5.47680 5.55188 5.70030 5.72491 5.88718 6.32284 6.33076 6.78824 7.18706 7.35005 8.89124 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.005378 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.668483 B = 5205.619223 C = 5567.382072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.189 3.811 3 N -0.533 5.533 4 C -0.054 4.054 5 C -0.055 4.055 6 N -0.446 5.446 7 C 0.137 3.863 8 H 0.112 0.888 9 C -0.113 4.113 10 C -0.107 4.107 11 C -0.106 4.106 12 C -0.062 4.062 13 H 0.059 0.941 14 C -0.008 4.008 15 C -0.516 4.516 16 H 0.041 0.959 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.251 1.251 23 C -0.111 4.111 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.183 0.817 28 H 0.189 0.811 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.012 0.988 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.057 0.943 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 15.265 -9.746 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 N -0.253 5.253 4 C -0.201 4.201 5 C -0.188 4.188 6 N -0.128 5.128 7 C 0.035 3.965 8 H 0.130 0.870 9 C -0.151 4.151 10 C -0.145 4.145 11 C -0.144 4.144 12 C -0.081 4.081 13 H 0.078 0.922 14 C -0.045 4.045 15 C -0.554 4.554 16 H 0.059 0.941 17 C -0.191 4.191 18 N -0.593 5.593 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.175 1.175 23 C -0.149 4.149 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.200 0.800 28 H 0.206 0.794 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.108 15.786 -9.654 18.536 hybrid contribution 0.886 -1.239 1.001 1.823 sum 1.993 14.546 -8.653 17.042 Atomic orbital electron populations 1.20321 0.83266 1.04925 1.04273 1.23875 0.96968 0.81393 1.05107 1.70194 1.03301 1.29612 1.22199 1.22610 0.94847 0.93621 1.08989 1.22966 0.88081 0.96680 1.11081 1.45737 1.06502 1.07471 1.53115 1.21630 1.01125 0.76800 0.96936 0.86991 1.21797 1.01764 0.95657 0.95853 1.21473 1.01313 0.93939 0.97809 1.21483 1.00093 0.99060 0.93760 1.20835 0.99630 0.92312 0.95296 0.92208 1.19580 0.95891 0.94145 0.94916 1.21441 1.27703 0.97937 1.08293 0.94060 1.25911 0.97831 0.94832 1.00551 1.70054 1.47040 1.08633 1.33551 0.85798 0.79511 0.79652 0.78517 1.19372 1.21318 1.17508 1.21852 1.01405 0.95344 0.96297 0.89630 0.88687 0.89208 0.80009 0.79439 0.90410 0.91014 0.91277 0.90215 0.92580 0.93453 0.96981 0.96729 0.92716 0.92446 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.03 71.24 0.71 -0.52 16 2 C 0.19 4.79 7.90 138.13 1.09 5.88 16 3 N -0.53 -15.54 11.25 -188.13 -2.12 -17.65 16 4 C -0.05 -1.36 11.87 83.52 0.99 -0.37 16 5 C -0.05 -1.28 10.60 83.08 0.88 -0.40 16 6 N -0.45 -10.68 2.61 -491.90 -1.28 -11.96 16 7 C 0.14 3.06 2.79 45.00 0.13 3.18 16 8 H 0.11 2.26 6.67 -2.39 -0.02 2.24 16 9 C -0.11 -2.25 5.27 30.60 0.16 -2.09 16 10 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 11 C -0.11 -3.36 5.01 30.59 0.15 -3.21 16 12 C -0.06 -2.11 2.14 -10.81 -0.02 -2.13 16 13 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 14 C -0.01 -0.35 3.52 29.85 0.10 -0.24 16 15 C -0.52 -28.31 8.96 25.60 0.23 -28.08 16 16 H 0.04 2.47 7.30 -2.92 -0.02 2.45 16 17 C 0.01 0.30 5.47 84.65 0.46 0.76 16 18 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 19 Si 0.94 43.82 27.47 68.60 1.88 45.71 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 23 C -0.11 -3.05 4.53 30.58 0.14 -2.92 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.09 1.27 7.08 -2.39 -0.02 1.25 16 27 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.43 7.96 -2.39 -0.02 1.41 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.80 6.95 -2.39 -0.02 1.79 16 35 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 36 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.86 7.95 -2.39 -0.02 1.84 16 Total: -1.00 -67.31 308.28 4.95 -62.36 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.95 Total: 12.34 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 5.21 Total: -32.40 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -3.10 Total: -88.01 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -67.31 4.95 -62.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.021 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds