Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 N 1.46491 * 109.47286 * 119.99998 * 2 1 3 5 5 C 1.36423 * 126.55932 * 300.17541 * 4 2 1 6 6 C 1.36215 * 107.19350 * 180.23885 * 5 4 2 7 7 C 1.50705 * 125.68970 * 179.77596 * 6 5 4 8 8 C 1.54266 * 110.02971 * 32.90679 * 7 6 5 9 9 C 1.54956 * 104.16094 * 217.13544 * 8 7 6 10 10 C 1.54890 * 102.77918 * 37.88903 * 9 8 7 11 11 C 1.53867 * 110.03246 * 275.69260 * 7 6 5 12 12 N 1.32759 * 108.62355 * 359.75536 * 6 5 4 13 13 C 1.32991 * 109.22265 * 359.97438 * 12 6 5 14 14 C 1.39989 * 125.96384 * 179.97438 * 13 12 6 15 15 H 1.08002 * 120.00308 * 180.02562 * 14 13 12 16 16 C 1.40239 * 119.99695 * 359.74944 * 14 13 12 17 17 N 1.30684 * 120.00322 * 0.27882 * 16 14 13 18 18 Si 1.86803 * 119.99747 * 180.27707 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00227 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00178 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99977 * 18 16 14 22 22 H 1.08995 * 109.47283 * 59.99987 * 1 2 3 23 23 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46734 * 299.99577 * 1 2 3 25 25 H 1.09003 * 109.46734 * 240.00423 * 2 1 3 26 26 H 1.09000 * 109.46864 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47235 * 300.00042 * 3 2 1 28 28 H 1.08998 * 109.46917 * 59.99989 * 3 2 1 29 29 H 1.08003 * 126.40000 * 0.02562 * 5 4 2 30 30 H 1.09000 * 110.01737 * 154.29466 * 7 6 5 31 31 H 1.08998 * 110.48911 * 335.78477 * 8 7 6 32 32 H 1.09002 * 110.48765 * 98.42336 * 8 7 6 33 33 H 1.09001 * 110.72285 * 279.57725 * 9 8 7 34 34 H 1.09000 * 110.76815 * 156.22548 * 9 8 7 35 35 H 1.08997 * 110.49351 * 203.40912 * 10 9 8 36 36 H 1.08996 * 110.59751 * 80.81439 * 10 9 8 37 37 H 1.09004 * 110.03251 * 238.56657 * 11 7 6 38 38 H 1.08997 * 110.03469 * 359.94420 * 11 7 6 39 39 H 0.97005 * 120.00035 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7700 -0.3450 2.4922 6 6 2.4168 -1.2480 3.2807 7 6 2.4251 -1.2524 4.7877 8 6 1.0803 -0.7208 5.3251 9 6 1.4712 0.0990 6.5806 10 6 2.7962 0.7755 6.1492 11 6 3.5157 -0.3019 5.3117 12 7 3.0385 -2.1238 2.5002 13 6 2.8119 -1.8136 1.2270 14 6 3.3014 -2.5053 0.1127 15 1 3.0564 -2.1672 -0.8833 16 6 4.1147 -3.6340 0.2898 17 7 4.4111 -4.0433 1.4950 18 14 4.7743 -4.5524 -1.1971 19 1 6.0851 -3.9775 -1.5927 20 1 4.9458 -5.9876 -0.8564 21 1 3.8162 -4.4223 -2.3243 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.1748 0.4905 2.8300 30 1 2.6014 -2.2628 5.1569 31 1 0.6005 -0.0799 4.5854 32 1 0.4245 -1.5477 5.5974 33 1 1.6333 -0.5579 7.4351 34 1 0.7111 0.8471 6.8058 35 1 3.3916 1.0401 7.0229 36 1 2.5960 1.6591 5.5432 37 1 4.2210 -0.8506 5.9359 38 1 4.0397 0.1620 4.4760 39 1 4.9734 -4.8242 1.6174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260674450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = 29.792797 kcal Electronic energy + Delta-G solvation = -18598.424822 eV Core-core repulsion = 15926.725388 eV Total energy + Delta-G solvation = -2671.699434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.06538 -37.34719 -34.79267 -33.20359 -30.05304 -28.76154 -28.09980 -27.35608 -26.82331 -24.43673 -21.74077 -20.24647 -20.10420 -19.10956 -17.80730 -16.66118 -15.76093 -15.01097 -14.55276 -14.30939 -13.85980 -13.76856 -12.97778 -12.80631 -12.56846 -12.50720 -12.19777 -11.84629 -11.52351 -11.22386 -11.15280 -10.99046 -10.84354 -10.67285 -10.59156 -10.46818 -10.36681 -10.30180 -10.12187 -9.84969 -9.74008 -9.10395 -7.73099 -7.62640 -6.84426 -6.30629 -4.16367 3.09236 3.19582 3.21773 3.73023 4.07156 4.39854 4.71305 5.18788 5.20665 5.26079 5.29980 5.50223 5.68944 5.80532 5.88449 5.88923 5.95733 6.02403 6.07405 6.11102 6.15207 6.18832 6.24080 6.31743 6.35816 6.48605 6.53223 6.56946 6.63596 6.73710 6.80691 6.86911 7.04536 7.30189 7.50191 7.74599 8.22841 8.36704 8.69690 9.07054 9.45078 10.38103 10.62819 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.007841 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.273309 B = 3570.302794 C = 4608.024296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 C -0.154 4.154 4 N -0.500 5.500 5 C -0.161 4.161 6 C 0.019 3.981 7 C 0.001 3.999 8 C -0.115 4.115 9 C -0.124 4.124 10 C -0.122 4.122 11 C -0.109 4.109 12 N -0.511 5.511 13 C 0.376 3.624 14 C -0.466 4.466 15 H 0.074 0.926 16 C 0.084 3.916 17 N -0.744 5.744 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.266 1.266 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 7.416 2.151 8.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 C -0.213 4.213 4 N -0.190 5.190 5 C -0.291 4.291 6 C -0.114 4.114 7 C -0.018 4.018 8 C -0.153 4.153 9 C -0.162 4.162 10 C -0.159 4.159 11 C -0.147 4.147 12 N -0.232 5.232 13 C 0.133 3.867 14 C -0.505 4.505 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.369 5.369 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.190 1.190 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.073 6.694 2.490 8.222 hybrid contribution -0.210 0.341 -1.028 1.103 sum -4.283 7.034 1.462 8.365 Atomic orbital electron populations 1.22108 0.95651 1.02242 1.01274 1.20858 0.93548 0.92726 0.89056 1.22105 1.01814 0.96060 1.01274 1.45471 1.44048 1.25433 1.04015 1.21335 1.16422 1.07107 0.84194 1.20399 1.01177 0.95985 0.93863 1.19794 0.93114 0.98504 0.90438 1.22467 0.97466 0.98968 0.96382 1.22500 0.96979 0.98702 0.98010 1.22343 0.96352 0.98379 0.98864 1.22125 0.97700 0.96205 0.98688 1.71171 1.27062 1.26276 0.98670 1.20202 0.89643 0.83655 0.93203 1.18043 1.30615 1.10956 0.90916 0.90758 1.25641 0.95254 0.96737 0.96322 1.70018 1.25841 1.19569 1.21467 0.86381 0.79648 0.78870 0.82033 1.19793 1.20378 1.19011 0.92347 0.92276 0.92705 0.89104 0.92293 0.92344 0.92708 0.85349 0.91201 0.91352 0.92431 0.92010 0.92426 0.92619 0.92168 0.92631 0.91805 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.25 37.16 0.34 -2.14 16 2 C 0.14 2.71 3.55 -67.93 -0.24 2.47 16 3 C -0.15 -2.48 9.25 37.16 0.34 -2.14 16 4 N -0.50 -11.83 2.66 -108.88 -0.29 -12.12 16 5 C -0.16 -3.69 9.59 -16.24 -0.16 -3.84 16 6 C 0.02 0.47 5.81 -82.92 -0.48 -0.01 16 7 C 0.00 0.02 3.42 -90.65 -0.31 -0.29 16 8 C -0.11 -1.92 6.30 -25.04 -0.16 -2.08 16 9 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 10 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 11 C -0.11 -1.98 6.45 -25.62 -0.17 -2.14 16 12 N -0.51 -14.77 9.41 -8.95 -0.08 -14.86 16 13 C 0.38 10.51 7.43 -155.59 -1.16 9.36 16 14 C -0.47 -12.80 9.03 -38.17 -0.34 -13.15 16 15 H 0.07 1.90 6.71 -52.49 -0.35 1.54 16 16 C 0.08 2.23 5.50 -17.29 -0.10 2.14 16 17 N -0.74 -21.10 11.90 55.56 0.66 -20.44 16 18 Si 0.91 19.52 29.56 -169.99 -5.03 14.49 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 25 H 0.09 1.76 6.69 -51.93 -0.35 1.41 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 29 H 0.13 2.62 7.00 -52.48 -0.37 2.26 16 30 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.07 1.17 6.06 -51.93 -0.31 0.85 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.29 7.67 -51.93 -0.40 0.89 16 39 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -30.84 312.06 -9.19 -40.03 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.39 Total: 3.84 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.76 Total: -15.65 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.29 Total: -47.41 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.84 -9.19 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.819 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds