Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 N 1.46491 * 109.47286 * 119.99998 * 2 1 3 5 5 C 1.36423 * 126.55932 * 300.17541 * 4 2 1 6 6 C 1.36215 * 107.19350 * 180.23885 * 5 4 2 7 7 C 1.50705 * 125.68970 * 179.77596 * 6 5 4 8 8 C 1.54266 * 110.02971 * 32.90679 * 7 6 5 9 9 C 1.54956 * 104.16094 * 217.13544 * 8 7 6 10 10 C 1.54890 * 102.77918 * 37.88903 * 9 8 7 11 11 C 1.53867 * 110.03246 * 275.69260 * 7 6 5 12 12 N 1.32759 * 108.62355 * 359.75536 * 6 5 4 13 13 C 1.32991 * 109.22265 * 359.97438 * 12 6 5 14 14 C 1.39989 * 125.96384 * 179.97438 * 13 12 6 15 15 H 1.08002 * 120.00308 * 180.02562 * 14 13 12 16 16 C 1.40239 * 119.99695 * 359.74944 * 14 13 12 17 17 N 1.30684 * 120.00322 * 0.27882 * 16 14 13 18 18 Si 1.86803 * 119.99747 * 180.27707 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00227 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00178 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99977 * 18 16 14 22 22 H 1.08995 * 109.47283 * 59.99987 * 1 2 3 23 23 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46734 * 299.99577 * 1 2 3 25 25 H 1.09003 * 109.46734 * 240.00423 * 2 1 3 26 26 H 1.09000 * 109.46864 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47235 * 300.00042 * 3 2 1 28 28 H 1.08998 * 109.46917 * 59.99989 * 3 2 1 29 29 H 1.08003 * 126.40000 * 0.02562 * 5 4 2 30 30 H 1.09000 * 110.01737 * 154.29466 * 7 6 5 31 31 H 1.08998 * 110.48911 * 335.78477 * 8 7 6 32 32 H 1.09002 * 110.48765 * 98.42336 * 8 7 6 33 33 H 1.09001 * 110.72285 * 279.57725 * 9 8 7 34 34 H 1.09000 * 110.76815 * 156.22548 * 9 8 7 35 35 H 1.08997 * 110.49351 * 203.40912 * 10 9 8 36 36 H 1.08996 * 110.59751 * 80.81439 * 10 9 8 37 37 H 1.09004 * 110.03251 * 238.56657 * 11 7 6 38 38 H 1.08997 * 110.03469 * 359.94420 * 11 7 6 39 39 H 0.97005 * 120.00035 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7700 -0.3450 2.4922 6 6 2.4168 -1.2480 3.2807 7 6 2.4251 -1.2524 4.7877 8 6 1.0803 -0.7208 5.3251 9 6 1.4712 0.0990 6.5806 10 6 2.7962 0.7755 6.1492 11 6 3.5157 -0.3019 5.3117 12 7 3.0385 -2.1238 2.5002 13 6 2.8119 -1.8136 1.2270 14 6 3.3014 -2.5053 0.1127 15 1 3.0564 -2.1672 -0.8833 16 6 4.1147 -3.6340 0.2898 17 7 4.4111 -4.0433 1.4950 18 14 4.7743 -4.5524 -1.1971 19 1 6.0851 -3.9775 -1.5927 20 1 4.9458 -5.9876 -0.8564 21 1 3.8162 -4.4223 -2.3243 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.1748 0.4905 2.8300 30 1 2.6014 -2.2628 5.1569 31 1 0.6005 -0.0799 4.5854 32 1 0.4245 -1.5477 5.5974 33 1 1.6333 -0.5579 7.4351 34 1 0.7111 0.8471 6.8058 35 1 3.3916 1.0401 7.0229 36 1 2.5960 1.6591 5.5432 37 1 4.2210 -0.8506 5.9359 38 1 4.0397 0.1620 4.4760 39 1 4.9734 -4.8242 1.6174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260674450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = 13.266228 kcal Electronic energy + Delta-G solvation = -18599.141468 eV Core-core repulsion = 15926.725388 eV Total energy + Delta-G solvation = -2672.416080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.93139 -38.75589 -36.37122 -35.17665 -31.67547 -30.62933 -29.46443 -29.05978 -28.12029 -26.30677 -23.34589 -21.93842 -21.47542 -20.73565 -19.58677 -18.51580 -17.47391 -16.56225 -16.22488 -15.69423 -15.43708 -15.31731 -14.67128 -14.52767 -14.02939 -13.93130 -13.71459 -13.11238 -13.10188 -12.95150 -12.86110 -12.55923 -12.39990 -12.02643 -12.01829 -11.88063 -11.83352 -11.79992 -11.60574 -11.36167 -11.29973 -11.03586 -9.65545 -9.62129 -8.80308 -8.28722 -6.21022 1.36662 1.41070 1.55416 1.88063 2.26594 2.68956 2.78258 3.62356 3.84091 3.87744 3.93425 3.98790 4.19566 4.27451 4.45930 4.58014 4.64940 4.69198 4.74229 4.77632 4.82482 4.84075 4.92328 4.94459 4.97409 5.10213 5.16308 5.19684 5.21336 5.30352 5.30914 5.41197 5.53651 5.56206 5.69852 5.82579 6.29879 6.39299 6.80235 7.08346 7.50047 8.42377 8.67740 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.007841 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.273309 B = 3570.302794 C = 4608.024296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.128 3.872 3 C -0.144 4.144 4 N -0.498 5.498 5 C -0.141 4.141 6 C -0.015 4.015 7 C -0.004 4.004 8 C -0.109 4.109 9 C -0.112 4.112 10 C -0.112 4.112 11 C -0.106 4.106 12 N -0.558 5.558 13 C 0.337 3.663 14 C -0.495 4.495 15 H 0.083 0.917 16 C 0.032 3.968 17 N -0.794 5.794 18 Si 0.988 3.012 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.254 1.254 22 H 0.097 0.903 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.160 0.840 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 9.410 1.863 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 C -0.201 4.201 4 N -0.187 5.187 5 C -0.271 4.271 6 C -0.147 4.147 7 C -0.023 4.023 8 C -0.147 4.147 9 C -0.150 4.150 10 C -0.150 4.150 11 C -0.145 4.145 12 N -0.280 5.280 13 C 0.091 3.909 14 C -0.535 4.535 15 H 0.101 0.899 16 C -0.186 4.186 17 N -0.421 5.421 18 Si 0.809 3.191 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.178 1.178 22 H 0.116 0.884 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.177 0.823 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.454 8.727 2.192 10.522 hybrid contribution 0.155 -0.196 -0.920 0.954 sum -5.300 8.531 1.271 10.123 Atomic orbital electron populations 1.22029 0.92997 1.01630 1.03509 1.21293 0.95648 0.93824 0.86789 1.22025 1.00439 0.94181 1.03495 1.45764 1.42799 1.24479 1.05682 1.21784 1.14785 1.06740 0.83818 1.21125 1.01615 0.96112 0.95894 1.19922 0.96365 0.97877 0.88174 1.22412 0.95125 0.99377 0.97766 1.22473 0.97031 0.98900 0.96575 1.22305 0.96600 0.97007 0.99048 1.22067 0.97264 0.96918 0.98210 1.71061 1.28517 1.28397 1.00032 1.20503 0.91476 0.85569 0.93347 1.18450 1.31716 1.12009 0.91324 0.89909 1.26689 0.95004 0.97295 0.99637 1.70177 1.27208 1.20470 1.24230 0.85134 0.79015 0.77172 0.77765 1.19047 1.19840 1.17766 0.88410 0.94306 0.92101 0.90200 0.94373 0.88385 0.92146 0.82254 0.94042 0.91472 0.92245 0.90886 0.89535 0.90164 0.91630 0.92620 0.94821 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 9.25 71.98 0.67 -3.61 16 2 C 0.13 4.70 3.55 45.00 0.16 4.86 16 3 C -0.14 -4.29 9.25 71.98 0.67 -3.62 16 4 N -0.50 -23.91 2.66 -498.37 -1.33 -25.24 16 5 C -0.14 -6.47 9.59 83.51 0.80 -5.67 16 6 C -0.02 -0.77 5.81 41.95 0.24 -0.53 16 7 C 0.00 -0.15 3.42 -10.82 -0.04 -0.19 16 8 C -0.11 -3.50 6.30 31.69 0.20 -3.30 16 9 C -0.11 -2.74 6.91 31.91 0.22 -2.52 16 10 C -0.11 -2.97 6.83 31.67 0.22 -2.76 16 11 C -0.11 -3.89 6.45 31.32 0.20 -3.69 16 12 N -0.56 -34.03 9.41 -182.21 -1.71 -35.74 16 13 C 0.34 19.63 7.43 133.58 0.99 20.62 16 14 C -0.50 -28.31 9.03 23.18 0.21 -28.10 16 15 H 0.08 4.36 6.71 -2.91 -0.02 4.34 16 16 C 0.03 1.77 5.50 85.35 0.47 2.24 16 17 N -0.79 -47.41 11.90 21.88 0.26 -47.15 16 18 Si 0.99 41.15 29.56 68.60 2.03 43.18 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 21 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 22 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 25 H 0.08 3.09 6.69 -2.39 -0.02 3.07 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 29 H 0.16 6.19 7.00 -2.91 -0.02 6.17 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.15 6.06 -2.39 -0.01 2.14 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.03 1.40 7.67 -2.39 -0.02 1.38 16 39 H 0.27 14.87 8.29 -92.70 -0.77 14.11 16 Total: -1.00 -72.17 312.06 5.27 -66.90 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.01 Total: 24.32 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 5.01 Total: -26.26 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -2.78 Total: -108.14 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -72.17 5.27 -66.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.164 kcal (2) G-P(sol) polarization free energy of solvation -72.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds