Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 C 1.50703 * 109.47430 * 119.99767 * 2 1 3 5 5 N 1.30731 * 125.87682 * 295.80969 * 4 2 1 6 6 N 1.39999 * 108.21198 * 180.02562 * 5 4 2 7 7 C 1.46505 * 126.03546 * 180.02562 * 6 5 4 8 8 C 1.35221 * 107.93837 * 359.97438 * 6 5 4 9 9 C 1.35136 * 107.74508 * 0.02562 * 8 6 5 10 10 C 1.51357 * 110.24907 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.33915 * 224.07904 * 10 9 8 12 12 C 1.50701 * 110.33623 * 101.94355 * 10 9 8 13 13 H 1.08001 * 119.99855 * 307.10821 * 12 10 9 14 14 C 1.37875 * 120.00155 * 127.10550 * 12 10 9 15 15 N 1.31512 * 120.00076 * 186.51187 * 14 12 10 16 16 Si 1.86801 * 119.99872 * 6.50719 * 14 12 10 17 17 H 1.48500 * 109.47194 * 275.15312 * 16 14 12 18 18 H 1.48497 * 109.47162 * 35.15308 * 16 14 12 19 19 H 1.48498 * 109.46990 * 155.15385 * 16 14 12 20 20 C 1.54444 * 105.09651 * 343.01302 * 10 9 8 21 21 H 1.08998 * 110.91887 * 267.60173 * 20 10 9 22 22 C 1.52996 * 110.92592 * 143.95721 * 20 10 9 23 23 C 1.51323 * 141.94964 * 180.02562 * 8 6 5 24 24 H 1.09005 * 109.47332 * 304.33263 * 1 2 3 25 25 H 1.08994 * 109.47628 * 64.33335 * 1 2 3 26 26 H 1.09006 * 109.46987 * 184.33689 * 1 2 3 27 27 H 1.08994 * 109.47335 * 240.00183 * 2 1 3 28 28 H 1.08994 * 109.47317 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46797 * 299.99918 * 3 2 1 30 30 H 1.09003 * 109.47131 * 60.00076 * 3 2 1 31 31 H 1.08996 * 109.47343 * 89.96789 * 7 6 5 32 32 H 1.08993 * 109.47191 * 209.97489 * 7 6 5 33 33 H 1.09001 * 109.46571 * 329.97109 * 7 6 5 34 34 H 0.97003 * 120.00374 * 180.02562 * 15 14 12 35 35 H 1.08994 * 109.47895 * 54.18901 * 22 20 10 36 36 H 1.09002 * 109.47153 * 174.19437 * 22 20 10 37 37 H 1.09009 * 109.46807 * 294.18759 * 22 20 10 38 38 H 1.09000 * 110.33788 * 315.78469 * 23 8 6 39 39 H 1.08998 * 110.33361 * 77.92084 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.8530 -0.3225 2.4660 6 7 2.4726 -1.2513 3.3105 7 6 2.5099 -1.1948 4.7740 8 6 3.0296 -2.2106 2.5372 9 6 2.7726 -1.9005 1.2473 10 6 3.3731 -2.9426 0.3284 11 1 3.8707 -2.4630 -0.5144 12 6 2.3050 -3.8855 -0.1629 13 1 1.6590 -4.3850 0.5439 14 6 2.1525 -4.1105 -1.5146 15 7 1.1425 -4.8304 -1.9515 16 14 3.3806 -3.3924 -2.7252 17 1 2.9928 -1.9974 -3.0550 18 1 4.7358 -3.3991 -2.1183 19 1 3.3894 -4.2100 -3.9649 20 6 4.4002 -3.7012 1.1972 21 1 5.3912 -3.2565 1.1057 22 6 4.4341 -5.1864 0.8318 23 6 3.8296 -3.4924 2.6198 24 1 -0.3634 0.5796 0.8486 25 1 -0.3634 0.4451 -0.9262 26 1 -0.3633 -1.0248 0.0777 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6471 -1.7226 5.1802 32 1 3.4254 -1.6652 5.1325 33 1 2.4850 -0.1544 5.0981 34 1 1.0353 -4.9890 -2.9025 35 1 4.6110 -5.2935 -0.2384 36 1 5.2353 -5.6782 1.3835 37 1 3.4800 -5.6460 1.0901 38 1 4.6401 -3.3873 3.3411 39 1 3.1831 -4.3253 2.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260794237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = 66.858850 kcal Electronic energy + Delta-G solvation = -19022.196531 eV Core-core repulsion = 16352.104401 eV Total energy + Delta-G solvation = -2670.092130 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88728 -36.55857 -35.18488 -32.24389 -31.73916 -29.48217 -28.26248 -26.64990 -25.80410 -25.02500 -23.25247 -21.61906 -19.22881 -18.71144 -17.89304 -16.86214 -15.87148 -15.06242 -14.23164 -14.05440 -13.87933 -13.76351 -13.15705 -12.98402 -12.57734 -12.41300 -12.27251 -11.86322 -11.68641 -11.62286 -11.47157 -11.05688 -10.90577 -10.74616 -10.62416 -10.56253 -10.36152 -10.18242 -9.84012 -9.49284 -9.39044 -9.09605 -8.48079 -8.33541 -7.20509 -6.02383 -3.97190 2.57230 3.01372 3.32012 3.40465 3.42180 3.66292 4.46270 4.88685 5.12543 5.31808 5.35591 5.39950 5.45780 5.53622 5.59522 5.70612 5.74711 5.97700 6.06600 6.08118 6.16185 6.26456 6.28220 6.30609 6.41926 6.56594 6.59559 6.62200 6.82189 6.86119 6.96108 7.10296 7.16138 7.24866 7.38864 7.60364 7.77579 7.85509 8.50361 8.60287 9.02938 9.61030 11.11000 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.011144 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.913952 B = 2511.929263 C = 3529.250963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.013 4.013 3 C -0.139 4.139 4 C 0.101 3.899 5 N -0.304 5.304 6 N -0.375 5.375 7 C 0.111 3.889 8 C 0.023 3.977 9 C -0.196 4.196 10 C 0.083 3.917 11 H 0.037 0.963 12 C -0.483 4.483 13 H 0.071 0.929 14 C 0.074 3.926 15 N -0.900 5.900 16 Si 0.868 3.132 17 H -0.275 1.275 18 H -0.265 1.265 19 H -0.291 1.291 20 C -0.086 4.086 21 H 0.056 0.944 22 C -0.113 4.113 23 C -0.024 4.024 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 6.475 7.791 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.126 5.126 6 N -0.158 5.158 7 C -0.031 4.031 8 C -0.102 4.102 9 C -0.207 4.207 10 C 0.062 3.938 11 H 0.055 0.945 12 C -0.521 4.521 13 H 0.089 0.911 14 C -0.128 4.128 15 N -0.538 5.538 16 Si 0.696 3.304 17 H -0.201 1.201 18 H -0.190 1.190 19 H -0.218 1.218 20 C -0.106 4.106 21 H 0.075 0.925 22 C -0.170 4.170 23 C -0.064 4.064 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.070 7.276 8.562 11.950 hybrid contribution 0.760 -0.245 -1.000 1.280 sum 4.830 7.031 7.562 11.399 Atomic orbital electron populations 1.21737 0.94282 1.02569 1.00861 1.19528 0.95853 0.94549 0.93382 1.21801 1.00786 0.95648 1.01415 1.21603 0.97538 0.94681 0.92616 1.77090 1.21061 1.14196 1.00214 1.47647 1.44340 1.18610 1.05192 1.21608 1.02230 1.03278 0.76017 1.21758 1.01520 0.94974 0.91919 1.21470 1.05886 0.97428 0.95904 1.18266 0.93132 0.90182 0.92186 0.94470 1.20702 1.15253 1.23835 0.92264 0.91056 1.25006 0.94899 0.94916 0.97938 1.69901 1.29102 1.40276 1.14537 0.86996 0.83008 0.79501 0.80910 1.20080 1.19037 1.21785 1.22090 0.97843 0.97433 0.93226 0.92542 1.21516 1.00477 0.94130 1.00906 1.20728 0.96208 0.90679 0.98749 0.92971 0.92793 0.91857 0.89311 0.93053 0.92707 0.92500 0.91847 0.90444 0.90273 0.92778 0.92572 0.95541 0.91469 0.92667 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.17 37.16 0.34 -2.10 16 2 C -0.01 -0.24 3.34 -91.77 -0.31 -0.55 16 3 C -0.14 -2.20 9.16 37.16 0.34 -1.86 16 4 C 0.10 2.17 5.74 -82.33 -0.47 1.70 16 5 N -0.30 -6.27 12.54 33.72 0.42 -5.85 16 6 N -0.37 -7.08 4.02 -63.64 -0.26 -7.33 16 7 C 0.11 1.45 11.47 59.85 0.69 2.14 16 8 C 0.02 0.47 7.58 -81.90 -0.62 -0.15 16 9 C -0.20 -4.45 6.11 -104.68 -0.64 -5.09 16 10 C 0.08 1.93 2.66 -91.84 -0.24 1.68 16 11 H 0.04 0.89 4.96 -51.93 -0.26 0.63 16 12 C -0.48 -12.93 6.83 -34.44 -0.24 -13.16 16 13 H 0.07 2.13 7.98 -52.49 -0.42 1.71 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 16 Si 0.87 21.01 26.91 -169.99 -4.57 16.44 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.14 6.86 56.52 0.39 -5.76 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 C -0.09 -1.70 3.61 -88.97 -0.32 -2.03 16 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 22 C -0.11 -2.17 8.23 37.16 0.31 -1.87 16 23 C -0.02 -0.44 6.34 -26.68 -0.17 -0.61 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.09 1.84 8.12 -51.93 -0.42 1.42 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 1.15 8.06 -51.93 -0.42 0.74 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 1.39 7.07 -51.92 -0.37 1.02 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.41 7.75 -51.93 -0.40 1.01 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -30.94 314.20 -6.84 -37.78 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.51 Total: 0.10 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -1.43 Total: -19.94 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.94 Total: -39.11 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.57 Total: 16.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.94 -6.84 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.637 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds