Wall clock time and date at job start Mon Mar 30 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 C 1.50703 * 109.47430 * 119.99767 * 2 1 3 5 5 N 1.30731 * 125.87682 * 295.80969 * 4 2 1 6 6 N 1.39999 * 108.21198 * 180.02562 * 5 4 2 7 7 C 1.46505 * 126.03546 * 180.02562 * 6 5 4 8 8 C 1.35221 * 107.93837 * 359.97438 * 6 5 4 9 9 C 1.35136 * 107.74508 * 0.02562 * 8 6 5 10 10 C 1.51357 * 110.24907 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.33915 * 224.07904 * 10 9 8 12 12 C 1.50701 * 110.33623 * 101.94355 * 10 9 8 13 13 H 1.08001 * 119.99855 * 307.10821 * 12 10 9 14 14 C 1.37875 * 120.00155 * 127.10550 * 12 10 9 15 15 N 1.31512 * 120.00076 * 186.51187 * 14 12 10 16 16 Si 1.86801 * 119.99872 * 6.50719 * 14 12 10 17 17 H 1.48500 * 109.47194 * 275.15312 * 16 14 12 18 18 H 1.48497 * 109.47162 * 35.15308 * 16 14 12 19 19 H 1.48498 * 109.46990 * 155.15385 * 16 14 12 20 20 C 1.54444 * 105.09651 * 343.01302 * 10 9 8 21 21 H 1.08998 * 110.91887 * 267.60173 * 20 10 9 22 22 C 1.52996 * 110.92592 * 143.95721 * 20 10 9 23 23 C 1.51323 * 141.94964 * 180.02562 * 8 6 5 24 24 H 1.09005 * 109.47332 * 304.33263 * 1 2 3 25 25 H 1.08994 * 109.47628 * 64.33335 * 1 2 3 26 26 H 1.09006 * 109.46987 * 184.33689 * 1 2 3 27 27 H 1.08994 * 109.47335 * 240.00183 * 2 1 3 28 28 H 1.08994 * 109.47317 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46797 * 299.99918 * 3 2 1 30 30 H 1.09003 * 109.47131 * 60.00076 * 3 2 1 31 31 H 1.08996 * 109.47343 * 89.96789 * 7 6 5 32 32 H 1.08993 * 109.47191 * 209.97489 * 7 6 5 33 33 H 1.09001 * 109.46571 * 329.97109 * 7 6 5 34 34 H 0.97003 * 120.00374 * 180.02562 * 15 14 12 35 35 H 1.08994 * 109.47895 * 54.18901 * 22 20 10 36 36 H 1.09002 * 109.47153 * 174.19437 * 22 20 10 37 37 H 1.09009 * 109.46807 * 294.18759 * 22 20 10 38 38 H 1.09000 * 110.33788 * 315.78469 * 23 8 6 39 39 H 1.08998 * 110.33361 * 77.92084 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.8530 -0.3225 2.4660 6 7 2.4726 -1.2513 3.3105 7 6 2.5099 -1.1948 4.7740 8 6 3.0296 -2.2106 2.5372 9 6 2.7726 -1.9005 1.2473 10 6 3.3731 -2.9426 0.3284 11 1 3.8707 -2.4630 -0.5144 12 6 2.3050 -3.8855 -0.1629 13 1 1.6590 -4.3850 0.5439 14 6 2.1525 -4.1105 -1.5146 15 7 1.1425 -4.8304 -1.9515 16 14 3.3806 -3.3924 -2.7252 17 1 2.9928 -1.9974 -3.0550 18 1 4.7358 -3.3991 -2.1183 19 1 3.3894 -4.2100 -3.9649 20 6 4.4002 -3.7012 1.1972 21 1 5.3912 -3.2565 1.1057 22 6 4.4341 -5.1864 0.8318 23 6 3.8296 -3.4924 2.6198 24 1 -0.3634 0.5796 0.8486 25 1 -0.3634 0.4451 -0.9262 26 1 -0.3633 -1.0248 0.0777 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6471 -1.7226 5.1802 32 1 3.4254 -1.6652 5.1325 33 1 2.4850 -0.1544 5.0981 34 1 1.0353 -4.9890 -2.9025 35 1 4.6110 -5.2935 -0.2384 36 1 5.2353 -5.6782 1.3835 37 1 3.4800 -5.6460 1.0901 38 1 4.6401 -3.3873 3.3411 39 1 3.1831 -4.3253 2.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:07 Heat of formation + Delta-G solvation = 48.642895 kcal Electronic energy + Delta-G solvation = -19022.986434 eV Core-core repulsion = 16352.104401 eV Total energy + Delta-G solvation = -2670.882033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.43447 -38.17761 -36.62983 -34.31886 -33.08995 -31.05090 -30.02558 -28.01094 -27.16113 -26.63438 -25.07840 -23.06019 -20.81864 -20.39632 -19.40697 -18.86688 -17.40387 -16.54280 -15.97972 -15.54122 -15.47979 -15.24065 -14.73345 -14.52055 -14.28819 -13.71836 -13.64851 -13.40587 -13.15304 -13.10824 -12.85902 -12.73342 -12.53955 -12.45090 -12.22209 -12.05854 -11.84442 -11.80138 -11.71840 -11.17018 -11.07849 -10.95834 -10.57765 -9.81331 -8.84340 -8.18001 -6.14892 1.03509 1.38104 1.39551 1.49275 1.65527 2.00949 2.42081 3.19584 3.50833 3.79734 3.93031 4.00248 4.17133 4.26335 4.29327 4.44951 4.53037 4.64078 4.65699 4.72058 4.78472 4.78963 4.83147 4.93495 4.94372 5.06919 5.08988 5.15618 5.22709 5.36306 5.40926 5.48648 5.55944 5.59966 5.70450 5.89849 5.97182 6.37425 6.45127 6.85198 6.93962 7.45821 8.99392 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.011144 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.913952 B = 2511.929263 C = 3529.250963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.019 4.019 3 C -0.127 4.127 4 C 0.084 3.916 5 N -0.315 5.315 6 N -0.371 5.371 7 C 0.099 3.901 8 C 0.033 3.967 9 C -0.249 4.249 10 C 0.077 3.923 11 H 0.027 0.973 12 C -0.465 4.465 13 H 0.025 0.975 14 C 0.019 3.981 15 N -0.952 5.952 16 Si 0.924 3.076 17 H -0.270 1.270 18 H -0.245 1.245 19 H -0.292 1.292 20 C -0.085 4.085 21 H 0.081 0.919 22 C -0.108 4.108 23 C -0.017 4.017 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.040 0.960 38 H 0.100 0.900 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 7.882 9.428 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.040 4.040 3 C -0.185 4.185 4 C -0.080 4.080 5 N -0.137 5.137 6 N -0.154 5.154 7 C -0.041 4.041 8 C -0.094 4.094 9 C -0.260 4.260 10 C 0.057 3.943 11 H 0.046 0.954 12 C -0.504 4.504 13 H 0.043 0.957 14 C -0.178 4.178 15 N -0.593 5.593 16 Si 0.749 3.251 17 H -0.196 1.196 18 H -0.169 1.169 19 H -0.219 1.219 20 C -0.105 4.105 21 H 0.099 0.901 22 C -0.165 4.165 23 C -0.056 4.056 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.118 0.882 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.178 8.705 10.242 14.793 hybrid contribution 0.049 -0.698 -1.350 1.521 sum 6.227 8.007 8.891 13.489 Atomic orbital electron populations 1.21667 0.93681 1.00682 1.02602 1.19604 0.96384 0.96289 0.91710 1.21708 1.00635 0.93343 1.02789 1.21926 0.97645 0.94865 0.93595 1.77016 1.21581 1.15064 1.00071 1.48104 1.42766 1.17486 1.07083 1.22083 1.04412 1.05092 0.72552 1.22128 1.00533 0.95244 0.91498 1.21594 1.08582 0.98763 0.97082 1.18259 0.92952 0.90050 0.93004 0.95443 1.20756 1.14925 1.23327 0.91342 0.95670 1.25720 0.96582 0.95624 0.99825 1.70051 1.31517 1.42921 1.14789 0.86077 0.81708 0.78712 0.78571 1.19593 1.16859 1.21855 1.22079 0.97847 0.97016 0.93526 0.90116 1.21438 1.00599 0.94285 1.00221 1.20740 0.97131 0.89202 0.98549 0.91899 0.90402 0.95368 0.91817 0.93166 0.90299 0.92068 0.90675 0.87343 0.88623 0.92960 0.94531 0.91387 0.94087 0.88157 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.17 71.98 0.66 -3.95 16 2 C -0.02 -0.74 3.34 -11.54 -0.04 -0.78 16 3 C -0.13 -3.83 9.16 71.98 0.66 -3.17 16 4 C 0.08 3.62 5.74 43.19 0.25 3.87 16 5 N -0.31 -12.65 12.54 -47.25 -0.59 -13.24 16 6 N -0.37 -13.21 4.02 -355.26 -1.43 -14.64 16 7 C 0.10 2.22 11.47 127.77 1.47 3.69 16 8 C 0.03 1.29 7.58 41.52 0.31 1.60 16 9 C -0.25 -11.29 6.11 -19.90 -0.12 -11.41 16 10 C 0.08 3.63 2.66 -11.59 -0.03 3.60 16 11 H 0.03 1.31 4.96 -2.39 -0.01 1.30 16 12 C -0.47 -25.92 6.83 25.60 0.17 -25.75 16 13 H 0.02 1.59 7.98 -2.91 -0.02 1.57 16 14 C 0.02 1.07 5.47 84.65 0.46 1.53 16 15 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 16 Si 0.92 44.16 26.91 68.60 1.85 46.01 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.24 -10.77 6.86 99.48 0.68 -10.09 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 C -0.09 -3.19 3.61 -9.73 -0.04 -3.23 16 21 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 22 C -0.11 -4.01 8.23 71.98 0.59 -3.42 16 23 C -0.02 -0.57 6.34 30.62 0.19 -0.37 16 24 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.06 2.72 8.12 -2.39 -0.02 2.70 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.04 1.47 8.06 -2.39 -0.02 1.45 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.70 7.07 -2.38 -0.02 1.68 16 38 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.08 2.60 7.75 -2.39 -0.02 2.58 16 Total: -1.00 -70.58 314.20 5.66 -64.93 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.98 Total: 13.64 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 4.55 Total: -37.80 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.72 Total: -86.78 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.85 Total: 46.01 kcal Total: -70.58 5.66 -64.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.568 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds