Wall clock time and date at job start Mon Mar 30 2020 06:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46700 * 2 1 4 4 N 1.46502 * 109.47413 * 119.99562 * 2 1 3 5 5 C 1.37873 * 126.77363 * 300.03262 * 4 2 1 6 6 C 1.39993 * 125.95136 * 0.08765 * 5 4 2 7 7 H 1.08000 * 119.99802 * 0.02562 * 6 5 4 8 8 C 1.40236 * 119.99883 * 180.02562 * 6 5 4 9 9 N 1.30684 * 120.00401 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99726 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47106 * 60.00547 * 10 8 6 12 12 H 1.48496 * 109.47034 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47526 * 300.00516 * 10 8 6 14 14 N 1.33297 * 108.10124 * 180.02562 * 5 4 2 15 15 C 1.32368 * 108.92003 * 359.97438 * 14 5 4 16 16 C 1.35534 * 108.74343 * 359.92236 * 15 14 5 17 17 C 1.51881 * 124.71092 * 180.18649 * 16 15 14 18 18 C 1.53637 * 106.99690 * 294.64982 * 17 16 15 19 19 C 1.50846 * 111.04430 * 79.79435 * 18 17 16 20 20 C 1.50807 * 116.75525 * 286.82499 * 19 18 17 21 21 C 1.52072 * 126.91552 * 179.75456 * 15 14 5 22 22 H 1.09000 * 109.47175 * 299.99608 * 1 2 3 23 23 H 1.08992 * 109.47435 * 60.00492 * 1 2 3 24 24 H 1.09005 * 109.46475 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47421 * 239.99905 * 2 1 3 26 26 H 1.09006 * 109.47164 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47279 * 299.99693 * 3 2 1 28 28 H 1.09000 * 109.47430 * 60.00573 * 3 2 1 29 29 H 0.96997 * 120.00129 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.94755 * 175.27759 * 17 16 15 31 31 H 1.09003 * 109.95365 * 54.02604 * 17 16 15 32 32 H 1.08999 * 109.16675 * 319.38944 * 18 17 16 33 33 H 1.09004 * 109.12295 * 200.16782 * 18 17 16 34 34 H 1.08992 * 107.99222 * 48.66084 * 19 18 17 35 35 H 1.08995 * 107.98978 * 164.99117 * 19 18 17 36 36 H 1.09004 * 109.13288 * 193.78435 * 20 19 18 37 37 H 1.08995 * 109.14234 * 312.91471 * 20 19 18 38 38 H 1.08997 * 109.94284 * 4.43556 * 21 15 14 39 39 H 1.08991 * 109.94474 * 125.68235 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7724 -0.3436 2.5077 6 6 1.0016 0.7421 2.9400 7 1 0.5366 1.3960 2.2172 8 6 0.8334 0.9806 4.3117 9 7 1.3965 0.1896 5.1864 10 14 -0.1946 2.4298 4.8885 11 1 -1.5813 2.2881 4.3763 12 1 -0.2157 2.4620 6.3730 13 1 0.3963 3.6916 4.3748 14 7 2.3952 -1.2229 3.2925 15 6 3.0216 -2.1077 2.5330 16 6 2.8004 -1.7990 1.2319 17 6 3.3490 -2.5822 0.0519 18 6 4.8777 -2.4334 0.0857 19 6 5.4910 -3.3707 1.0961 20 6 5.3039 -3.0180 2.5503 21 6 3.8614 -3.2845 3.0046 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4427 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.2803 0.3548 6.1351 30 1 2.9562 -2.1748 -0.8798 31 1 3.0755 -3.6334 0.1437 32 1 5.1316 -1.4068 0.3497 33 1 5.2804 -2.6587 -0.9019 34 1 5.0705 -4.3630 0.9335 35 1 6.5614 -3.4257 0.8980 36 1 5.9852 -3.6177 3.1539 37 1 5.5348 -1.9626 2.6948 38 1 3.8213 -3.3579 4.0914 39 1 3.4944 -4.2071 2.5550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260821796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:58 Heat of formation + Delta-G solvation = 31.513097 kcal Electronic energy + Delta-G solvation = -19140.920262 eV Core-core repulsion = 16469.295425 eV Total energy + Delta-G solvation = -2671.624837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29497 -36.42037 -34.72326 -33.20080 -31.56862 -29.24886 -28.73690 -26.64100 -26.59808 -23.12634 -22.66217 -21.54936 -19.86550 -18.61421 -17.89644 -16.61396 -15.40751 -14.79452 -14.24287 -14.08758 -13.80443 -13.58190 -13.30580 -12.83467 -12.63009 -12.39580 -11.99393 -11.83146 -11.54667 -11.39831 -11.22743 -11.08283 -10.80676 -10.71100 -10.56501 -10.46977 -10.22814 -10.13606 -10.05277 -9.88946 -9.57145 -9.05495 -7.72840 -7.61175 -6.72016 -6.30157 -4.11993 3.09679 3.18809 3.19305 3.71117 4.06052 4.38631 4.74982 5.26533 5.32585 5.38920 5.47461 5.54814 5.72875 5.84676 5.91190 5.94273 6.06005 6.10643 6.14519 6.18891 6.26329 6.32475 6.37047 6.40348 6.45075 6.51425 6.64305 6.69016 6.76522 6.81450 6.85158 6.86734 7.01760 7.35400 7.52995 7.80679 8.28428 8.37025 8.71874 9.08066 9.47200 10.38898 10.63209 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023372 B = 0.008760 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.745357 B = 3195.449723 C = 4065.581365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 C -0.165 4.165 4 N -0.493 5.493 5 C 0.379 3.621 6 C -0.462 4.462 7 H 0.081 0.919 8 C 0.082 3.918 9 N -0.744 5.744 10 Si 0.902 3.098 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.269 1.269 14 N -0.509 5.509 15 C 0.017 3.983 16 C -0.140 4.140 17 C -0.019 4.019 18 C -0.107 4.107 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.026 4.026 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.270 0.730 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -1.849 -8.205 8.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 C -0.223 4.223 4 N -0.183 5.183 5 C 0.136 3.864 6 C -0.501 4.501 7 H 0.099 0.901 8 C -0.141 4.141 9 N -0.369 5.369 10 Si 0.727 3.273 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.194 1.194 14 N -0.230 5.230 15 C -0.117 4.117 16 C -0.252 4.252 17 C -0.057 4.057 18 C -0.145 4.145 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.064 4.064 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.599 -1.883 -7.253 7.931 hybrid contribution -0.487 0.724 -0.695 1.115 sum 2.112 -1.159 -7.948 8.305 Atomic orbital electron populations 1.22213 0.95223 1.02135 1.02747 1.20723 0.94204 0.92982 0.87356 1.22207 1.01113 0.96210 1.02728 1.45170 1.43191 1.23711 1.06227 1.20192 0.95317 0.94941 0.75937 1.18145 1.30239 1.09724 0.92011 0.90114 1.25675 0.95244 0.96638 0.96553 1.70007 1.32569 1.32404 1.01904 0.86493 0.80720 0.82002 0.78041 1.19341 1.20479 1.19362 1.71181 1.16852 1.06087 1.28901 1.20364 1.02801 0.99127 0.89443 1.20050 1.11493 0.97690 0.95974 1.20033 0.93716 0.97830 0.94168 1.21218 0.95807 1.00176 0.97321 1.20639 0.99177 0.99239 0.95359 1.21143 0.96892 1.01619 0.94875 1.20093 0.92226 0.94147 0.99962 0.90037 0.92713 0.92987 0.91145 0.93017 0.92723 0.90056 0.91930 0.93410 0.92273 0.92291 0.93273 0.93113 0.93753 0.92997 0.92134 0.91661 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.20 37.15 0.34 -2.58 16 2 C 0.15 2.90 3.41 -67.93 -0.23 2.67 16 3 C -0.16 -2.91 9.21 37.16 0.34 -2.57 16 4 N -0.49 -11.63 2.65 -104.10 -0.28 -11.91 16 5 C 0.38 10.40 7.04 -155.01 -1.09 9.31 16 6 C -0.46 -12.31 7.51 -38.17 -0.29 -12.59 16 7 H 0.08 1.98 4.52 -52.49 -0.24 1.74 16 8 C 0.08 2.16 5.50 -17.29 -0.10 2.07 16 9 N -0.74 -20.93 11.89 55.56 0.66 -20.27 16 10 Si 0.90 19.30 29.56 -169.99 -5.03 14.27 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 13 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 14 N -0.51 -14.73 9.42 -8.60 -0.08 -14.81 16 15 C 0.02 0.42 6.25 -82.65 -0.52 -0.10 16 16 C -0.14 -3.21 6.06 -81.26 -0.49 -3.70 16 17 C -0.02 -0.34 5.91 -26.97 -0.16 -0.50 16 18 C -0.11 -1.73 5.62 -27.48 -0.15 -1.88 16 19 C -0.11 -1.63 5.07 -28.91 -0.15 -1.77 16 20 C -0.11 -1.88 5.61 -27.54 -0.15 -2.03 16 21 C -0.03 -0.53 6.02 -26.91 -0.16 -0.69 16 22 H 0.08 1.61 5.60 -51.93 -0.29 1.32 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 1.22 6.59 -51.93 -0.34 0.88 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.60 5.61 -51.93 -0.29 1.31 16 29 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 30 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 31 H 0.06 1.02 7.87 -51.93 -0.41 0.61 16 32 H 0.06 1.07 7.90 -51.93 -0.41 0.66 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.73 7.64 -51.93 -0.40 0.33 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.20 7.90 -51.93 -0.41 0.79 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.05 1.03 7.87 -51.93 -0.41 0.62 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -30.64 298.84 -9.08 -39.72 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.06 Total: 2.87 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.81 Total: -14.38 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.30 Total: -46.99 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.64 -9.08 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260821796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.234 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds