Wall clock time and date at job start Mon Mar 30 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46700 * 2 1 4 4 N 1.46502 * 109.47413 * 119.99562 * 2 1 3 5 5 C 1.37873 * 126.77363 * 300.03262 * 4 2 1 6 6 C 1.39993 * 125.95136 * 0.08765 * 5 4 2 7 7 H 1.08000 * 119.99802 * 0.02562 * 6 5 4 8 8 C 1.40236 * 119.99883 * 180.02562 * 6 5 4 9 9 N 1.30684 * 120.00401 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99726 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47106 * 60.00547 * 10 8 6 12 12 H 1.48496 * 109.47034 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47526 * 300.00516 * 10 8 6 14 14 N 1.33297 * 108.10124 * 180.02562 * 5 4 2 15 15 C 1.32368 * 108.92003 * 359.97438 * 14 5 4 16 16 C 1.35534 * 108.74343 * 359.92236 * 15 14 5 17 17 C 1.51881 * 124.71092 * 180.18649 * 16 15 14 18 18 C 1.53637 * 106.99690 * 294.64982 * 17 16 15 19 19 C 1.50846 * 111.04430 * 79.79435 * 18 17 16 20 20 C 1.50807 * 116.75525 * 286.82499 * 19 18 17 21 21 C 1.52072 * 126.91552 * 179.75456 * 15 14 5 22 22 H 1.09000 * 109.47175 * 299.99608 * 1 2 3 23 23 H 1.08992 * 109.47435 * 60.00492 * 1 2 3 24 24 H 1.09005 * 109.46475 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47421 * 239.99905 * 2 1 3 26 26 H 1.09006 * 109.47164 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47279 * 299.99693 * 3 2 1 28 28 H 1.09000 * 109.47430 * 60.00573 * 3 2 1 29 29 H 0.96997 * 120.00129 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.94755 * 175.27759 * 17 16 15 31 31 H 1.09003 * 109.95365 * 54.02604 * 17 16 15 32 32 H 1.08999 * 109.16675 * 319.38944 * 18 17 16 33 33 H 1.09004 * 109.12295 * 200.16782 * 18 17 16 34 34 H 1.08992 * 107.99222 * 48.66084 * 19 18 17 35 35 H 1.08995 * 107.98978 * 164.99117 * 19 18 17 36 36 H 1.09004 * 109.13288 * 193.78435 * 20 19 18 37 37 H 1.08995 * 109.14234 * 312.91471 * 20 19 18 38 38 H 1.08997 * 109.94284 * 4.43556 * 21 15 14 39 39 H 1.08991 * 109.94474 * 125.68235 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7724 -0.3436 2.5077 6 6 1.0016 0.7421 2.9400 7 1 0.5366 1.3960 2.2172 8 6 0.8334 0.9806 4.3117 9 7 1.3965 0.1896 5.1864 10 14 -0.1946 2.4298 4.8885 11 1 -1.5813 2.2881 4.3763 12 1 -0.2157 2.4620 6.3730 13 1 0.3963 3.6916 4.3748 14 7 2.3952 -1.2229 3.2925 15 6 3.0216 -2.1077 2.5330 16 6 2.8004 -1.7990 1.2319 17 6 3.3490 -2.5822 0.0519 18 6 4.8777 -2.4334 0.0857 19 6 5.4910 -3.3707 1.0961 20 6 5.3039 -3.0180 2.5503 21 6 3.8614 -3.2845 3.0046 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4427 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.2803 0.3548 6.1351 30 1 2.9562 -2.1748 -0.8798 31 1 3.0755 -3.6334 0.1437 32 1 5.1316 -1.4068 0.3497 33 1 5.2804 -2.6587 -0.9019 34 1 5.0705 -4.3630 0.9335 35 1 6.5614 -3.4257 0.8980 36 1 5.9852 -3.6177 3.1539 37 1 5.5348 -1.9626 2.6948 38 1 3.8213 -3.3579 4.0914 39 1 3.4944 -4.2071 2.5550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260821796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:57 Heat of formation + Delta-G solvation = 14.467146 kcal Electronic energy + Delta-G solvation = -19141.659430 eV Core-core repulsion = 16469.295425 eV Total energy + Delta-G solvation = -2672.364004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.10347 -37.87162 -36.32909 -35.11705 -33.09297 -30.96814 -30.44394 -28.40756 -28.06297 -24.76427 -24.21862 -23.27433 -21.28993 -20.32800 -19.64189 -18.48963 -17.11056 -16.51062 -15.73818 -15.67153 -15.34961 -15.04165 -14.76756 -14.51302 -14.18222 -13.92435 -13.53083 -13.42384 -13.15859 -12.89051 -12.80414 -12.73395 -12.46735 -12.24466 -12.10757 -11.98097 -11.91985 -11.56467 -11.44928 -11.34732 -11.18327 -10.92170 -9.61365 -9.55931 -8.61497 -8.24171 -6.09969 1.38758 1.41578 1.53526 1.90913 2.27685 2.70071 2.83213 3.71181 3.87537 3.95269 4.06138 4.11161 4.24029 4.27163 4.42071 4.43878 4.62091 4.70871 4.75918 4.78325 4.81772 4.88585 4.93478 4.96430 5.02942 5.10232 5.16280 5.31118 5.33474 5.36938 5.41793 5.44277 5.53457 5.60261 5.69381 5.95210 6.42104 6.45751 6.87377 7.15342 7.58051 8.48125 8.72410 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023372 B = 0.008760 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.745357 B = 3195.449723 C = 4065.581365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 C -0.156 4.156 4 N -0.494 5.494 5 C 0.342 3.658 6 C -0.482 4.482 7 H 0.094 0.906 8 C 0.029 3.971 9 N -0.797 5.797 10 Si 0.981 3.019 11 H -0.258 1.258 12 H -0.278 1.278 13 H -0.259 1.259 14 N -0.561 5.561 15 C -0.032 4.032 16 C -0.126 4.126 17 C -0.017 4.017 18 C -0.102 4.102 19 C -0.107 4.107 20 C -0.099 4.099 21 C -0.023 4.023 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.270 0.730 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.042 0.958 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -1.993 -11.150 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 C -0.214 4.214 4 N -0.183 5.183 5 C 0.097 3.903 6 C -0.521 4.521 7 H 0.112 0.888 8 C -0.189 4.189 9 N -0.424 5.424 10 Si 0.802 3.198 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.184 1.184 14 N -0.283 5.283 15 C -0.164 4.164 16 C -0.239 4.239 17 C -0.056 4.056 18 C -0.139 4.139 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.061 4.061 22 H 0.074 0.926 23 H 0.115 0.885 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.806 -2.029 -10.243 10.812 hybrid contribution -0.505 0.688 0.095 0.858 sum 2.301 -1.341 -10.147 10.491 Atomic orbital electron populations 1.22140 0.94086 1.01754 1.03494 1.21165 0.95210 0.93645 0.86327 1.22133 1.00366 0.95438 1.03471 1.45505 1.42449 1.23772 1.06561 1.20473 0.96534 0.95690 0.77612 1.18554 1.30654 1.10125 0.92816 0.88828 1.26704 0.96239 0.99485 0.96482 1.70188 1.35085 1.35013 1.02110 0.85295 0.79025 0.78113 0.77349 1.18262 1.20278 1.18351 1.71051 1.18168 1.07656 1.31427 1.21096 1.04378 1.00446 0.90493 1.20927 1.09002 0.96736 0.97218 1.20231 0.95035 0.97755 0.92557 1.21177 0.94287 0.98863 0.99607 1.20627 1.01100 0.99710 0.93025 1.21088 0.95185 0.99898 0.97526 1.20161 0.93747 0.93489 0.98703 0.92634 0.88486 0.93916 0.88592 0.94067 0.88489 0.92661 0.92036 0.91624 0.90825 0.95043 0.89454 0.91214 0.91005 0.90473 0.95582 0.93961 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 9.20 71.98 0.66 -4.61 16 2 C 0.14 5.08 3.41 44.99 0.15 5.24 16 3 C -0.16 -5.28 9.21 71.98 0.66 -4.62 16 4 N -0.49 -23.47 2.65 -483.27 -1.28 -24.75 16 5 C 0.34 19.55 7.04 133.38 0.94 20.49 16 6 C -0.48 -26.69 7.51 23.18 0.17 -26.52 16 7 H 0.09 4.71 4.52 -2.91 -0.01 4.70 16 8 C 0.03 1.57 5.50 85.35 0.47 2.04 16 9 N -0.80 -47.50 11.89 21.88 0.26 -47.24 16 10 Si 0.98 40.87 29.56 68.60 2.03 42.90 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 14 N -0.56 -34.24 9.42 -181.11 -1.71 -35.94 16 15 C -0.03 -1.64 6.25 42.29 0.26 -1.37 16 16 C -0.13 -5.73 6.06 41.71 0.25 -5.48 16 17 C -0.02 -0.57 5.91 30.44 0.18 -0.39 16 18 C -0.10 -2.94 5.62 30.11 0.17 -2.77 16 19 C -0.11 -2.92 5.07 29.18 0.15 -2.77 16 20 C -0.10 -3.39 5.61 30.07 0.17 -3.22 16 21 C -0.02 -0.94 6.02 30.48 0.18 -0.75 16 22 H 0.05 2.16 5.60 -2.39 -0.01 2.15 16 23 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.10 2.99 6.59 -2.39 -0.02 2.98 16 26 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.05 2.16 5.61 -2.39 -0.01 2.15 16 29 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 30 H 0.07 1.93 6.68 -2.38 -0.02 1.91 16 31 H 0.07 2.26 7.87 -2.39 -0.02 2.25 16 32 H 0.03 1.08 7.90 -2.39 -0.02 1.06 16 33 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.07 1.68 7.64 -2.39 -0.02 1.67 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.03 1.05 7.90 -2.39 -0.02 1.03 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.71 7.87 -2.39 -0.02 2.69 16 Total: -1.00 -72.33 298.84 4.76 -67.57 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.03 Total: 22.20 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 4.43 Total: -24.74 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -2.73 Total: -107.93 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -72.33 4.76 -67.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260821796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.038 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds