Wall clock time and date at job start Mon Mar 30 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.50704 * 109.47093 * 119.99690 * 2 1 3 5 5 C 1.39868 * 126.03872 * 299.99826 * 4 2 1 6 6 N 1.30841 * 108.20283 * 179.74122 * 5 4 2 7 7 N 1.40089 * 108.20251 * 0.41016 * 6 5 4 8 8 C 1.46496 * 126.03659 * 179.85613 * 7 6 5 9 9 H 1.09001 * 110.54015 * 332.07208 * 8 7 6 10 10 C 1.54893 * 110.48684 * 209.45818 * 8 7 6 11 11 C 1.54956 * 102.77917 * 203.40493 * 10 8 7 12 12 C 1.54271 * 104.16126 * 37.88766 * 11 10 8 13 13 H 1.08998 * 110.02713 * 95.75567 * 12 11 10 14 14 C 1.50702 * 110.03051 * 217.13476 * 12 11 10 15 15 H 1.08002 * 119.99441 * 117.91363 * 14 12 11 16 16 C 1.37871 * 120.00075 * 297.90939 * 14 12 11 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 12 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.53867 * 106.63806 * 336.44761 * 12 11 10 23 23 C 1.34951 * 107.92555 * 359.58645 * 7 6 5 24 24 H 1.09002 * 109.47250 * 299.99818 * 1 2 3 25 25 H 1.08997 * 109.46996 * 60.00227 * 1 2 3 26 26 H 1.08999 * 109.46772 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47321 * 239.99494 * 2 1 3 28 28 H 1.09005 * 109.47303 * 299.99943 * 3 2 1 29 29 H 1.08995 * 109.47508 * 59.99608 * 3 2 1 30 30 H 1.09005 * 109.47215 * 180.02562 * 3 2 1 31 31 H 1.07997 * 125.90045 * 0.02562 * 5 4 2 32 32 H 1.09000 * 110.75356 * 321.69563 * 10 8 7 33 33 H 1.09007 * 110.75279 * 84.87801 * 10 8 7 34 34 H 1.09001 * 110.47906 * 279.23381 * 11 10 8 35 35 H 1.09004 * 110.52950 * 156.56979 * 11 10 8 36 36 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 37 37 H 1.09003 * 110.03567 * 119.26174 * 22 12 11 38 38 H 1.09007 * 110.03093 * 240.64119 * 22 12 11 39 39 H 1.07998 * 126.13020 * 180.26768 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7735 -0.3442 2.5554 6 7 2.3730 -1.2017 3.3410 7 7 3.0410 -2.1366 2.5396 8 6 3.8400 -3.2673 3.0183 9 1 4.2646 -3.0481 3.9980 10 6 4.9615 -3.6061 2.0050 11 6 5.2726 -5.0907 2.3218 12 6 3.8932 -5.7072 2.6336 13 1 3.4863 -6.1822 1.7409 14 6 4.0187 -6.7181 3.7442 15 1 3.4939 -6.5649 4.6756 16 6 4.8035 -7.8384 3.5712 17 7 5.4422 -8.0252 2.4369 18 14 4.9651 -9.0876 4.9507 19 1 5.8634 -10.1884 4.5190 20 1 5.5342 -8.4268 6.1527 21 1 3.6261 -9.6405 5.2772 22 6 2.9826 -4.5485 3.0758 23 6 2.8136 -1.8150 1.2489 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.1776 0.4980 2.8748 32 1 4.6030 -3.4971 0.9814 33 1 5.8375 -2.9800 2.1747 34 1 5.9289 -5.1662 3.1887 35 1 5.7226 -5.5798 1.4577 36 1 5.3580 -7.3767 1.7204 37 1 2.1339 -4.4606 2.3973 38 1 2.6306 -4.7177 4.0935 39 1 3.1877 -2.3447 0.3853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260932317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:05 Heat of formation + Delta-G solvation = 44.807144 kcal Electronic energy + Delta-G solvation = -18056.265486 eV Core-core repulsion = 15385.217122 eV Total energy + Delta-G solvation = -2671.048363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10251 -37.65941 -35.41007 -33.12738 -30.90823 -29.32166 -28.36455 -27.12930 -26.55109 -23.90101 -22.40787 -21.73827 -19.77626 -19.34543 -19.04140 -16.92780 -16.64848 -15.10271 -14.80621 -14.34877 -14.15944 -13.86395 -13.76582 -13.28428 -13.00813 -12.87545 -12.50560 -12.23722 -11.99267 -11.39541 -11.24831 -11.17091 -11.01379 -10.94072 -10.76107 -10.66207 -10.29301 -10.15928 -10.09100 -9.93644 -9.75656 -9.07528 -8.51376 -8.39865 -8.06545 -6.37879 -4.11456 2.19958 2.83409 3.00212 3.41980 3.42540 3.61482 4.49478 4.65375 4.93090 5.03138 5.09431 5.17534 5.24545 5.31061 5.40255 5.46937 5.59703 5.65444 5.73226 5.81382 5.83862 5.91609 6.02893 6.13776 6.16883 6.19653 6.25422 6.28288 6.41469 6.45625 6.62303 6.76645 6.88618 6.95653 7.22458 7.40001 7.51791 8.01959 8.16697 8.38193 8.83761 9.60042 10.99416 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.047940 B = 0.004439 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.918874 B = 6306.366985 C = 6416.608121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 C -0.140 4.140 4 C -0.245 4.245 5 C 0.042 3.958 6 N -0.300 5.300 7 N -0.349 5.349 8 C 0.153 3.847 9 H 0.101 0.899 10 C -0.132 4.132 11 C -0.108 4.108 12 C 0.033 3.967 13 H 0.022 0.978 14 C -0.596 4.596 15 H 0.050 0.950 16 C 0.020 3.980 17 N -0.912 5.912 18 Si 1.066 2.934 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.113 4.113 23 C 0.060 3.940 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.173 0.827 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.271 0.729 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 14.893 -4.940 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.198 4.198 4 C -0.257 4.257 5 C -0.144 4.144 6 N -0.121 5.121 7 N -0.130 5.130 8 C 0.052 3.948 9 H 0.119 0.881 10 C -0.171 4.171 11 C -0.147 4.147 12 C 0.014 3.986 13 H 0.040 0.960 14 C -0.634 4.634 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.548 5.548 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.152 4.152 23 C -0.087 4.087 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.190 0.810 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.235 12.986 -3.232 14.036 hybrid contribution -0.924 1.676 -1.208 2.263 sum -5.158 14.662 -4.440 16.164 Atomic orbital electron populations 1.21815 0.95119 1.01710 1.01200 1.19330 0.94973 0.94902 0.94156 1.21812 1.00989 0.95752 1.01216 1.19930 1.09465 1.01037 0.95227 1.23548 1.00373 0.99041 0.91399 1.77325 1.13156 1.02109 1.19541 1.48978 1.38144 1.22197 1.03632 1.22483 0.90686 0.82533 0.99108 0.88080 1.22970 0.96434 0.99899 0.97776 1.22606 1.00675 0.90469 1.00952 1.19380 0.90072 0.92126 0.97047 0.95977 1.22084 1.32964 1.07600 1.00773 0.93175 1.25780 0.93151 0.98459 1.01013 1.70819 1.40787 1.38560 1.04654 0.83584 0.76393 0.75997 0.74631 1.20787 1.21435 1.21487 1.22609 0.97720 0.92979 1.01888 1.22248 0.99863 0.97591 0.89026 0.92777 0.92987 0.92783 0.91201 0.93004 0.92778 0.92883 0.80993 0.91586 0.91859 0.91513 0.92258 0.91670 0.93331 0.91377 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.08 37.16 0.34 -1.02 16 2 C -0.01 -0.15 3.28 -91.77 -0.30 -0.45 16 3 C -0.14 -1.29 9.08 37.16 0.34 -0.96 16 4 C -0.24 -3.33 4.80 -105.05 -0.50 -3.83 16 5 C 0.04 0.61 11.45 -17.36 -0.20 0.41 16 6 N -0.30 -5.31 12.58 30.62 0.39 -4.93 16 7 N -0.35 -6.06 3.56 -53.25 -0.19 -6.25 16 8 C 0.15 2.80 3.99 -66.27 -0.26 2.54 16 9 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 10 C -0.13 -2.28 6.22 -24.70 -0.15 -2.44 16 11 C -0.11 -2.31 5.28 -25.03 -0.13 -2.45 16 12 C 0.03 0.78 2.50 -90.65 -0.23 0.55 16 13 H 0.02 0.57 7.99 -51.93 -0.41 0.15 16 14 C -0.60 -16.16 8.37 -34.44 -0.29 -16.45 16 15 H 0.05 1.37 7.33 -52.49 -0.38 0.98 16 16 C 0.02 0.56 5.32 -17.82 -0.09 0.47 16 17 N -0.91 -26.42 13.41 55.43 0.74 -25.68 16 18 Si 1.07 24.65 29.90 -169.99 -5.08 19.57 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.11 -2.36 6.18 -25.62 -0.16 -2.52 16 23 C 0.06 0.91 10.46 -17.22 -0.18 0.73 16 24 H 0.05 0.50 8.02 -51.93 -0.42 0.09 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.48 8.02 -51.93 -0.42 0.07 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.07 1.04 6.32 -51.93 -0.33 0.71 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.54 7.85 -51.93 -0.41 1.13 16 35 H 0.06 1.29 6.86 -51.93 -0.36 0.94 16 36 H 0.27 7.69 5.46 -40.82 -0.22 7.46 16 37 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.07 1.49 7.37 -51.93 -0.38 1.11 16 39 H 0.17 2.18 6.83 -52.49 -0.36 1.82 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -29.49 311.91 -7.55 -37.05 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.28 Total: 0.95 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -1.83 Total: -25.41 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.94 Total: -36.85 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.49 -7.55 -37.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260932317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.855 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds