Wall clock time and date at job start Mon Mar 30 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.50704 * 109.47093 * 119.99690 * 2 1 3 5 5 C 1.39868 * 126.03872 * 299.99826 * 4 2 1 6 6 N 1.30841 * 108.20283 * 179.74122 * 5 4 2 7 7 N 1.40089 * 108.20251 * 0.41016 * 6 5 4 8 8 C 1.46496 * 126.03659 * 179.85613 * 7 6 5 9 9 H 1.09001 * 110.54015 * 332.07208 * 8 7 6 10 10 C 1.54893 * 110.48684 * 209.45818 * 8 7 6 11 11 C 1.54956 * 102.77917 * 203.40493 * 10 8 7 12 12 C 1.54271 * 104.16126 * 37.88766 * 11 10 8 13 13 H 1.08998 * 110.02713 * 95.75567 * 12 11 10 14 14 C 1.50702 * 110.03051 * 217.13476 * 12 11 10 15 15 H 1.08002 * 119.99441 * 117.91363 * 14 12 11 16 16 C 1.37871 * 120.00075 * 297.90939 * 14 12 11 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 12 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.53867 * 106.63806 * 336.44761 * 12 11 10 23 23 C 1.34951 * 107.92555 * 359.58645 * 7 6 5 24 24 H 1.09002 * 109.47250 * 299.99818 * 1 2 3 25 25 H 1.08997 * 109.46996 * 60.00227 * 1 2 3 26 26 H 1.08999 * 109.46772 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47321 * 239.99494 * 2 1 3 28 28 H 1.09005 * 109.47303 * 299.99943 * 3 2 1 29 29 H 1.08995 * 109.47508 * 59.99608 * 3 2 1 30 30 H 1.09005 * 109.47215 * 180.02562 * 3 2 1 31 31 H 1.07997 * 125.90045 * 0.02562 * 5 4 2 32 32 H 1.09000 * 110.75356 * 321.69563 * 10 8 7 33 33 H 1.09007 * 110.75279 * 84.87801 * 10 8 7 34 34 H 1.09001 * 110.47906 * 279.23381 * 11 10 8 35 35 H 1.09004 * 110.52950 * 156.56979 * 11 10 8 36 36 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 37 37 H 1.09003 * 110.03567 * 119.26174 * 22 12 11 38 38 H 1.09007 * 110.03093 * 240.64119 * 22 12 11 39 39 H 1.07998 * 126.13020 * 180.26768 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7735 -0.3442 2.5554 6 7 2.3730 -1.2017 3.3410 7 7 3.0410 -2.1366 2.5396 8 6 3.8400 -3.2673 3.0183 9 1 4.2646 -3.0481 3.9980 10 6 4.9615 -3.6061 2.0050 11 6 5.2726 -5.0907 2.3218 12 6 3.8932 -5.7072 2.6336 13 1 3.4863 -6.1822 1.7409 14 6 4.0187 -6.7181 3.7442 15 1 3.4939 -6.5649 4.6756 16 6 4.8035 -7.8384 3.5712 17 7 5.4422 -8.0252 2.4369 18 14 4.9651 -9.0876 4.9507 19 1 5.8634 -10.1884 4.5190 20 1 5.5342 -8.4268 6.1527 21 1 3.6261 -9.6405 5.2772 22 6 2.9826 -4.5485 3.0758 23 6 2.8136 -1.8150 1.2489 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.1776 0.4980 2.8748 32 1 4.6030 -3.4971 0.9814 33 1 5.8375 -2.9800 2.1747 34 1 5.9289 -5.1662 3.1887 35 1 5.7226 -5.5798 1.4577 36 1 5.3580 -7.3767 1.7204 37 1 2.1339 -4.4606 2.3973 38 1 2.6306 -4.7177 4.0935 39 1 3.1877 -2.3447 0.3853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260932317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:05 Heat of formation + Delta-G solvation = 29.789503 kcal Electronic energy + Delta-G solvation = -18056.916699 eV Core-core repulsion = 15385.217122 eV Total energy + Delta-G solvation = -2671.699577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30600 -39.28202 -36.38446 -34.96367 -32.41804 -30.51684 -30.05883 -28.09465 -27.84306 -25.89336 -23.48908 -22.98697 -21.38004 -20.68971 -20.36778 -18.95553 -17.91697 -16.59206 -15.94502 -15.69943 -15.51653 -15.28900 -15.13467 -14.73450 -14.34558 -14.02527 -13.81607 -13.58210 -12.99016 -12.91400 -12.76437 -12.51520 -12.35703 -12.28316 -11.95973 -11.92414 -11.82858 -11.77039 -11.70919 -11.60742 -11.20800 -10.58054 -10.50419 -10.31495 -9.23716 -8.57500 -6.31933 0.99515 1.53377 1.54869 1.59695 1.79316 1.90996 2.56667 3.18395 3.38058 3.69484 3.81908 3.93289 3.97983 4.17364 4.29454 4.36248 4.47127 4.48239 4.58562 4.61852 4.71972 4.80774 4.83740 4.85815 4.91730 4.93322 5.04207 5.11729 5.17157 5.25421 5.32992 5.40551 5.52428 5.58447 5.59915 5.83419 6.07093 6.16034 6.22172 6.67815 6.82555 7.46449 8.80868 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.047940 B = 0.004439 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.918874 B = 6306.366985 C = 6416.608121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.014 4.014 3 C -0.137 4.137 4 C -0.235 4.235 5 C 0.047 3.953 6 N -0.341 5.341 7 N -0.366 5.366 8 C 0.165 3.835 9 H 0.093 0.907 10 C -0.114 4.114 11 C -0.099 4.099 12 C 0.025 3.975 13 H -0.001 1.001 14 C -0.612 4.612 15 H 0.041 0.959 16 C -0.025 4.025 17 N -0.935 5.935 18 Si 1.108 2.892 19 H -0.283 1.283 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.103 4.103 23 C 0.046 3.954 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.201 0.799 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 16.682 -5.555 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.194 4.194 4 C -0.247 4.247 5 C -0.138 4.138 6 N -0.162 5.162 7 N -0.147 5.147 8 C 0.063 3.937 9 H 0.111 0.889 10 C -0.152 4.152 11 C -0.138 4.138 12 C 0.007 3.993 13 H 0.017 0.983 14 C -0.650 4.650 15 H 0.059 0.941 16 C -0.225 4.225 17 N -0.573 5.573 18 Si 0.931 3.069 19 H -0.209 1.209 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.142 4.142 23 C -0.100 4.100 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.751 14.805 -3.862 16.021 hybrid contribution -0.868 1.192 -1.061 1.817 sum -5.619 15.997 -4.923 17.655 Atomic orbital electron populations 1.21797 0.94281 1.01225 1.02339 1.19438 0.95587 0.95500 0.92817 1.21781 1.00529 0.94828 1.02296 1.20328 1.08039 1.00259 0.96057 1.24105 0.99283 0.98825 0.91618 1.77293 1.14662 1.03296 1.20926 1.48783 1.39213 1.22320 1.04372 1.22099 0.90350 0.81970 0.99253 0.88867 1.22827 0.96960 0.96868 0.98583 1.22328 0.98491 0.93314 0.99633 1.19366 0.92132 0.92682 0.95166 0.98322 1.22447 1.32569 1.08680 1.01308 0.94069 1.27058 0.92692 1.00385 1.02315 1.70911 1.42150 1.38896 1.05307 0.83027 0.76997 0.74141 0.72738 1.20858 1.19821 1.20131 1.22397 0.97574 0.93637 1.00556 1.22719 1.00321 0.98327 0.88657 0.92467 0.91108 0.94067 0.90547 0.91219 0.92481 0.93580 0.78199 0.89567 0.89655 0.93593 0.93120 0.92402 0.93237 0.93155 0.79907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.08 71.98 0.65 -1.61 16 2 C -0.01 -0.25 3.28 -11.54 -0.04 -0.29 16 3 C -0.14 -2.08 9.08 71.98 0.65 -1.42 16 4 C -0.24 -5.84 4.80 -20.14 -0.10 -5.93 16 5 C 0.05 1.27 11.45 85.24 0.98 2.24 16 6 N -0.34 -11.68 12.58 -57.02 -0.72 -12.40 16 7 N -0.37 -12.31 3.56 -322.39 -1.15 -13.46 16 8 C 0.17 6.00 3.99 46.07 0.18 6.18 16 9 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 10 C -0.11 -3.80 6.22 31.91 0.20 -3.60 16 11 C -0.10 -4.28 5.28 31.69 0.17 -4.11 16 12 C 0.03 1.24 2.50 -10.82 -0.03 1.22 16 13 H 0.00 -0.07 7.99 -2.39 -0.02 -0.09 16 14 C -0.61 -34.01 8.37 25.60 0.21 -33.79 16 15 H 0.04 2.30 7.33 -2.91 -0.02 2.28 16 16 C -0.03 -1.42 5.32 84.65 0.45 -0.97 16 17 N -0.94 -55.17 13.41 21.45 0.29 -54.89 16 18 Si 1.11 49.84 29.90 68.60 2.05 51.89 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 22 C -0.10 -4.36 6.18 31.32 0.19 -4.17 16 23 C 0.05 1.29 10.46 83.54 0.87 2.17 16 24 H 0.06 0.89 8.02 -2.39 -0.02 0.87 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 0.83 8.02 -2.39 -0.02 0.81 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.09 2.54 6.32 -2.39 -0.02 2.53 16 33 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.05 2.15 7.85 -2.39 -0.02 2.13 16 35 H 0.05 2.25 6.86 -2.38 -0.02 2.23 16 36 H 0.26 15.43 5.46 -92.70 -0.51 14.92 16 37 H 0.05 2.04 8.04 -2.39 -0.02 2.03 16 38 H 0.05 2.27 7.37 -2.38 -0.02 2.25 16 39 H 0.18 4.37 6.83 -2.91 -0.02 4.35 16 Total: -1.00 -64.16 311.91 6.15 -58.01 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.27 Total: 14.93 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 4.40 Total: -44.09 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.58 Total: -80.74 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Total: -64.16 6.15 -58.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260932317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.804 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds