Wall clock time and date at job start Mon Mar 30 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39863 * 126.03939 * 2 1 4 4 N 1.30837 * 108.19940 * 180.23470 * 3 2 1 5 5 N 1.40080 * 108.20847 * 359.78161 * 4 3 2 6 6 C 1.46501 * 126.03988 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46979 * 334.97845 * 6 5 4 8 8 C 1.53001 * 109.47083 * 214.97346 * 6 5 4 9 9 C 1.52995 * 109.47050 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47061 * 60.00178 * 9 8 6 11 11 C 1.52999 * 109.47393 * 300.00400 * 10 9 8 12 12 H 1.09003 * 109.46445 * 299.99465 * 11 10 9 13 13 C 1.52992 * 109.47375 * 179.97438 * 11 10 9 14 14 C 1.50708 * 109.47322 * 64.99635 * 13 11 10 15 15 H 1.08001 * 119.99580 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00235 * 180.02562 * 14 13 11 17 17 N 1.31512 * 119.99746 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99867 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47354 * 60.00072 * 18 16 14 20 20 H 1.48504 * 109.46952 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47442 * 299.99858 * 18 16 14 22 22 C 1.52998 * 109.47421 * 59.99229 * 11 10 9 23 23 C 1.34953 * 107.92287 * 359.97438 * 5 4 3 24 24 H 1.09001 * 109.47341 * 270.15416 * 1 2 3 25 25 H 1.09002 * 109.47285 * 30.14938 * 1 2 3 26 26 H 1.08996 * 109.47189 * 150.14895 * 1 2 3 27 27 H 1.08001 * 125.90034 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.47466 * 300.00536 * 8 6 5 29 29 H 1.09005 * 109.46871 * 60.00394 * 8 6 5 30 30 H 1.09000 * 109.47567 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47670 * 300.00713 * 9 8 6 32 32 H 1.09010 * 109.46855 * 59.99978 * 10 9 8 33 33 H 1.09000 * 109.47228 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47208 * 184.99564 * 13 11 10 35 35 H 1.09000 * 109.47513 * 304.99821 * 13 11 10 36 36 H 0.97003 * 119.99662 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.47023 * 180.02562 * 22 11 10 38 38 H 1.09006 * 109.46890 * 59.99920 * 22 11 10 39 39 H 1.08002 * 126.12372 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5754 0.7301 -0.0051 5 7 3.5844 -0.6707 -0.0034 6 6 4.7745 -1.5249 -0.0072 7 1 5.6109 -0.9809 -0.4459 8 6 4.4962 -2.7836 -0.8314 9 6 5.7393 -3.6754 -0.8358 10 6 6.0871 -4.0728 0.6002 11 6 6.3653 -2.8142 1.4245 12 1 7.2015 -2.2699 0.9855 13 6 6.7124 -3.2114 2.8606 14 6 8.0045 -3.9872 2.8689 15 1 8.5260 -4.1774 1.9425 16 6 8.5206 -4.4540 4.0591 17 7 7.8857 -4.2219 5.1872 18 14 10.1218 -5.4161 4.0693 19 1 11.2097 -4.5725 3.5128 20 1 10.4588 -5.8016 5.4632 21 1 9.9700 -6.6386 3.2401 22 6 5.1222 -1.9222 1.4289 23 6 2.3030 -1.0942 0.0034 24 1 -0.3634 0.0028 1.0277 25 1 -0.3634 0.8886 -0.5162 26 1 -0.3633 -0.8913 -0.5115 27 1 1.9951 2.1578 0.0004 28 1 3.6598 -3.3276 -0.3927 29 1 4.2489 -2.5005 -1.8546 30 1 5.5410 -4.5724 -1.4226 31 1 6.5755 -3.1312 -1.2747 32 1 5.2509 -4.6171 1.0392 33 1 6.9725 -4.7085 0.5970 34 1 6.8236 -2.3139 3.4691 35 1 5.9141 -3.8309 3.2693 36 1 8.2491 -4.5501 6.0246 37 1 5.3206 -1.0254 2.0157 38 1 4.2860 -2.4666 1.8678 39 1 1.9723 -2.1223 0.0059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:05 Heat of formation + Delta-G solvation = 23.527010 kcal Electronic energy + Delta-G solvation = -18020.373001 eV Core-core repulsion = 15348.401861 eV Total energy + Delta-G solvation = -2671.971139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23697 -39.63733 -35.64235 -34.15182 -32.91268 -32.33746 -30.35961 -28.57582 -27.16565 -25.14024 -23.92177 -22.55621 -21.41002 -21.10987 -20.27664 -18.46591 -17.72160 -16.53069 -16.15655 -15.86720 -15.56228 -15.24755 -14.90434 -14.40798 -14.20286 -13.97445 -13.78564 -13.70593 -13.41592 -13.31267 -12.90191 -12.68433 -12.57639 -12.51483 -12.22115 -12.02692 -11.81601 -11.70494 -11.45368 -11.25002 -10.96404 -10.91639 -10.53726 -10.29443 -9.18079 -8.18606 -6.28740 1.01507 1.39930 1.42702 1.50258 1.58924 1.91860 2.41311 3.14892 3.46931 3.72289 3.87497 3.97836 4.02021 4.19768 4.24652 4.36362 4.48049 4.52664 4.53735 4.60281 4.66517 4.88766 4.93620 5.02970 5.03735 5.05839 5.08378 5.18495 5.29830 5.34916 5.37832 5.41371 5.50607 5.56211 5.77477 5.84763 5.85959 6.20247 6.25992 6.83146 6.87303 7.40143 8.93379 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.037877 B = 0.004535 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.060458 B = 6172.364376 C = 6501.693112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.257 4.257 3 C 0.037 3.963 4 N -0.344 5.344 5 N -0.370 5.370 6 C 0.167 3.833 7 H 0.091 0.909 8 C -0.113 4.113 9 C -0.106 4.106 10 C -0.103 4.103 11 C -0.067 4.067 12 H 0.056 0.944 13 C 0.033 3.967 14 C -0.530 4.530 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.937 5.937 18 Si 0.962 3.038 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.263 1.263 22 C -0.109 4.109 23 C 0.048 3.952 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.203 0.797 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.059 0.941 34 H -0.022 1.022 35 H -0.009 1.009 36 H 0.262 0.738 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.745 3.890 -14.303 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.269 4.269 3 C -0.148 4.148 4 N -0.165 5.165 5 N -0.152 5.152 6 C 0.066 3.934 7 H 0.110 0.890 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.141 4.141 11 C -0.086 4.086 12 H 0.074 0.926 13 C -0.004 4.004 14 C -0.568 4.568 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.578 5.578 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.148 4.148 23 C -0.098 4.098 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.220 0.780 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.077 0.923 34 H -0.004 1.004 35 H 0.009 0.991 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.383 4.150 -14.139 18.620 hybrid contribution 0.209 -0.452 0.971 1.091 sum -11.174 3.698 -13.168 17.662 Atomic orbital electron populations 1.20067 0.87239 1.03115 1.01941 1.20549 0.98562 0.91311 1.16456 1.24283 0.89621 1.01229 0.99715 1.77289 1.22985 0.90315 1.25918 1.48946 1.06116 1.04053 1.56048 1.21367 0.84853 0.90475 0.96707 0.89041 1.21851 1.00004 0.93412 0.99863 1.21494 0.96825 0.99898 0.96145 1.21481 1.01238 0.96523 0.94834 1.20996 0.95079 0.95825 0.96737 0.92600 1.19005 0.95279 0.94120 0.92001 1.21618 1.07778 1.34044 0.93317 0.91601 1.25979 1.01144 0.97542 0.95326 1.70109 1.41252 1.47771 0.98669 0.85547 0.79428 0.79278 0.77102 1.19361 1.21242 1.18780 1.21881 0.98851 0.98889 0.95139 1.22809 0.83962 1.01420 1.01605 0.92015 0.90802 0.91097 0.78018 0.90051 0.89660 0.89014 0.91401 0.92828 0.92260 1.00368 0.99088 0.92967 0.94323 0.92215 0.79041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.37 71.24 0.74 -0.26 16 2 C -0.26 -5.85 6.10 -20.15 -0.12 -5.98 16 3 C 0.04 0.93 11.96 85.23 1.02 1.95 16 4 N -0.34 -11.02 12.58 -57.03 -0.72 -11.74 16 5 N -0.37 -10.86 3.53 -327.49 -1.16 -12.01 16 6 C 0.17 4.81 3.20 44.99 0.14 4.95 16 7 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 8 C -0.11 -2.49 4.85 30.59 0.15 -2.34 16 9 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 10 C -0.10 -3.45 5.01 30.60 0.15 -3.29 16 11 C -0.07 -2.68 2.14 -10.80 -0.02 -2.70 16 12 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 13 C 0.03 1.75 4.45 29.85 0.13 1.88 16 14 C -0.53 -29.62 8.41 25.60 0.22 -29.40 16 15 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 18 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 C -0.11 -3.87 4.81 30.59 0.15 -3.72 16 23 C 0.05 1.17 10.50 83.54 0.88 2.05 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 28 H 0.08 1.63 7.16 -2.39 -0.02 1.61 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.06 2.17 6.95 -2.39 -0.02 2.16 16 34 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 35 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.19 3.49 7.26 -2.91 -0.02 3.47 16 Total: -1.00 -68.75 314.06 5.51 -63.24 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.00 Total: 10.67 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.07 Total: -38.87 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.59 Total: -81.20 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.75 5.51 -63.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.763 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds