Wall clock time and date at job start Mon Mar 30 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39863 * 126.03631 * 2 1 4 4 N 1.30839 * 108.20234 * 180.02562 * 3 2 1 5 5 N 1.40088 * 108.20255 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.03614 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47583 * 264.87203 * 6 5 4 8 8 C 1.52997 * 109.46922 * 144.86767 * 6 5 4 9 9 C 1.52997 * 109.47295 * 300.00181 * 8 6 5 10 10 C 1.52998 * 109.47207 * 299.99747 * 9 8 6 11 11 C 1.53003 * 109.46841 * 60.00438 * 10 9 8 12 12 H 1.08994 * 109.47356 * 59.99717 * 11 10 9 13 13 C 1.52998 * 109.46841 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.47242 * 294.99528 * 13 11 10 15 15 H 1.08005 * 119.99783 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00368 * 180.02562 * 14 13 11 17 17 N 1.31517 * 119.99763 * 0.27963 * 16 14 13 18 18 Si 1.86796 * 120.00285 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47128 * 60.00156 * 18 16 14 20 20 H 1.48501 * 109.47138 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47272 * 300.00315 * 18 16 14 22 22 C 1.52998 * 109.47050 * 299.99431 * 11 10 9 23 23 C 1.34942 * 107.92599 * 0.26629 * 5 4 3 24 24 H 1.08996 * 109.46779 * 89.97902 * 1 2 3 25 25 H 1.08998 * 109.46656 * 209.97892 * 1 2 3 26 26 H 1.09001 * 109.46854 * 329.97531 * 1 2 3 27 27 H 1.08000 * 125.90333 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47302 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.46780 * 60.00583 * 8 6 5 30 30 H 1.09002 * 109.47176 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47041 * 60.00574 * 9 8 6 32 32 H 1.08994 * 109.47377 * 300.00168 * 10 9 8 33 33 H 1.09005 * 109.46895 * 179.97438 * 10 9 8 34 34 H 1.09007 * 109.47117 * 174.99583 * 13 11 10 35 35 H 1.08998 * 109.47502 * 54.99426 * 13 11 10 36 36 H 0.97000 * 120.00008 * 359.71491 * 17 16 14 37 37 H 1.08997 * 109.47414 * 179.97438 * 22 11 10 38 38 H 1.09002 * 109.47066 * 300.00606 * 22 11 10 39 39 H 1.07999 * 126.12730 * 179.72909 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5844 -0.6706 -0.0003 6 6 4.7746 -1.5248 -0.0013 7 1 5.0153 -1.8115 -1.0250 8 6 4.5018 -2.7804 0.8293 9 6 4.1640 -2.3780 2.2662 10 6 5.3420 -1.6121 2.8716 11 6 5.6148 -0.3563 2.0411 12 1 4.7293 0.2792 2.0418 13 6 6.7931 0.4092 2.6462 14 6 6.4157 0.9115 4.0160 15 1 5.4337 0.7049 4.4152 16 6 7.3240 1.6347 4.7596 17 7 8.5179 1.8910 4.2712 18 14 6.8559 2.2579 6.4572 19 1 6.5136 1.1064 7.3302 20 1 7.9997 3.0009 7.0445 21 1 5.6825 3.1613 6.3467 22 6 5.9526 -0.7587 0.6042 23 6 2.3032 -1.0941 -0.0056 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3632 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 1.9951 2.1578 0.0004 28 1 5.3875 -3.4158 0.8289 29 1 3.6626 -3.3261 0.3979 30 1 3.9692 -3.2725 2.8578 31 1 3.2785 -1.7425 2.2669 32 1 6.2275 -2.2476 2.8709 33 1 5.1011 -1.3250 3.8952 34 1 7.0445 1.2547 2.0057 35 1 7.6543 -0.2540 2.7270 36 1 8.7609 1.5676 3.3895 37 1 6.1465 0.1358 0.0124 38 1 6.8382 -1.3943 0.6035 39 1 1.9725 -2.1222 -0.0110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260942527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:10 Heat of formation + Delta-G solvation = 44.672579 kcal Electronic energy + Delta-G solvation = -18673.628211 eV Core-core repulsion = 16002.574012 eV Total energy + Delta-G solvation = -2671.054199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21820 -38.16135 -34.00963 -32.50161 -31.62664 -30.77006 -29.40918 -26.39884 -25.95082 -23.24123 -22.65153 -21.34502 -20.15589 -19.87607 -18.90138 -16.66571 -16.19818 -15.68696 -14.56885 -14.20567 -13.93963 -13.67257 -13.41011 -13.17691 -13.11920 -12.94007 -12.61776 -12.12470 -11.99465 -11.83699 -11.70349 -11.38433 -11.11586 -10.79479 -10.67675 -10.52600 -10.19131 -10.06719 -9.83119 -9.58660 -9.22631 -9.06201 -8.39758 -8.23715 -8.05312 -6.26874 -3.94117 2.17761 2.76107 3.04209 3.47483 3.50109 3.68352 4.54724 4.61342 4.86090 4.94091 4.98879 5.11762 5.37198 5.40783 5.49456 5.54313 5.58314 5.65205 5.74199 5.77097 5.89207 5.95824 6.00184 6.02767 6.10594 6.22451 6.31431 6.38143 6.55820 6.64645 6.90988 6.98679 7.05341 7.14590 7.32307 7.52241 7.68927 8.02545 8.33458 8.56124 8.98755 9.76942 11.13600 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023931 B = 0.006342 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.770173 B = 4413.625160 C = 4850.321799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.251 4.251 3 C 0.037 3.963 4 N -0.273 5.273 5 N -0.351 5.351 6 C 0.162 3.838 7 H 0.080 0.920 8 C -0.127 4.127 9 C -0.122 4.122 10 C -0.105 4.105 11 C -0.069 4.069 12 H 0.068 0.932 13 C 0.017 3.983 14 C -0.591 4.591 15 H 0.046 0.954 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 1.066 2.934 19 H -0.289 1.289 20 H -0.283 1.283 21 H -0.289 1.289 22 C -0.116 4.116 23 C 0.049 3.951 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.176 0.824 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.006 0.994 35 H 0.003 0.997 36 H 0.268 0.732 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 -9.168 -9.410 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.263 4.263 3 C -0.149 4.149 4 N -0.094 5.094 5 N -0.133 5.133 6 C 0.060 3.940 7 H 0.097 0.903 8 C -0.166 4.166 9 C -0.160 4.160 10 C -0.143 4.143 11 C -0.088 4.088 12 H 0.087 0.913 13 C -0.020 4.020 14 C -0.629 4.629 15 H 0.065 0.935 16 C -0.190 4.190 17 N -0.553 5.553 18 Si 0.894 3.106 19 H -0.216 1.216 20 H -0.208 1.208 21 H -0.215 1.215 22 C -0.154 4.154 23 C -0.097 4.097 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.193 0.807 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.021 0.979 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.031 -8.045 -8.104 15.877 hybrid contribution -1.440 -1.182 -1.337 2.293 sum -12.471 -9.227 -9.441 18.160 Atomic orbital electron populations 1.19988 0.89868 1.01799 1.00915 1.20053 0.96722 0.92026 1.17528 1.23752 0.90241 0.99577 1.01379 1.77472 1.20737 0.88854 1.22330 1.48732 1.04974 1.04537 1.55086 1.21437 0.83771 0.89276 0.99478 0.90265 1.21933 1.02353 0.95625 0.96660 1.21616 1.00000 0.99968 0.94377 1.21529 0.96095 0.96311 1.00354 1.21026 1.01013 0.95956 0.90799 0.91341 1.19215 0.92571 0.94215 0.96021 1.22020 1.01531 1.37523 1.01839 0.93530 1.25785 0.93839 0.94942 1.04473 1.70775 1.20330 1.44678 1.19547 0.83595 0.75525 0.76342 0.75108 1.21586 1.20831 1.21544 1.21842 0.94752 0.99902 0.98855 1.22119 0.84708 0.99584 1.03310 0.92677 0.92590 0.92109 0.80654 0.89724 0.91920 0.92358 0.92173 0.92960 0.91047 0.97607 0.97873 0.92206 0.90976 0.91070 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.37 36.01 0.37 -0.30 16 2 C -0.25 -3.38 6.10 -105.05 -0.64 -4.02 16 3 C 0.04 0.56 11.96 -17.37 -0.21 0.36 16 4 N -0.27 -4.94 10.52 30.62 0.32 -4.62 16 5 N -0.35 -5.48 2.87 -54.86 -0.16 -5.64 16 6 C 0.16 2.31 3.64 -67.93 -0.25 2.06 16 7 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 8 C -0.13 -1.56 5.07 -26.73 -0.14 -1.69 16 9 C -0.12 -1.81 5.72 -26.73 -0.15 -1.96 16 10 C -0.11 -2.01 5.01 -26.73 -0.13 -2.14 16 11 C -0.07 -1.48 1.94 -90.62 -0.18 -1.65 16 12 H 0.07 1.62 6.56 -51.93 -0.34 1.28 16 13 C 0.02 0.44 3.76 -27.88 -0.10 0.34 16 14 C -0.59 -17.26 8.41 -34.44 -0.29 -17.55 16 15 H 0.05 1.35 7.05 -52.48 -0.37 0.98 16 16 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 17 N -0.92 -28.90 13.65 55.43 0.76 -28.14 16 18 Si 1.07 26.20 29.90 -169.99 -5.08 21.11 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 C -0.12 -2.04 4.42 -26.73 -0.12 -2.15 16 23 C 0.05 0.66 9.35 -17.23 -0.16 0.50 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.62 7.16 -51.93 -0.37 0.25 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.97 6.64 -51.93 -0.35 0.62 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.53 6.95 -51.93 -0.36 1.17 16 34 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 35 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 36 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 37 H 0.07 1.37 7.98 -51.93 -0.41 0.96 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.16 1.67 7.27 -52.49 -0.38 1.29 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -33.06 305.52 -7.96 -41.03 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.31 Total: -0.40 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.09 Total: -27.95 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.92 Total: -38.40 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.08 Total: 21.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.06 -7.96 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.699 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds