Wall clock time and date at job start Mon Mar 30 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46978 * 24.97557 * 6 5 4 8 8 C 1.53003 * 109.47305 * 144.97315 * 6 5 4 9 9 C 1.53003 * 109.47020 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47245 * 300.00079 * 9 8 6 11 11 C 1.52998 * 109.46877 * 60.00115 * 10 9 8 12 12 H 1.08997 * 109.47134 * 60.00042 * 11 10 9 13 13 C 1.53001 * 109.46877 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46959 * 294.99876 * 13 11 10 15 15 H 1.07997 * 119.99916 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99536 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99377 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00444 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47157 * 89.99592 * 18 16 14 20 20 H 1.48496 * 109.47109 * 209.99986 * 18 16 14 21 21 H 1.48504 * 109.47158 * 330.00113 * 18 16 14 22 22 C 1.52994 * 109.47406 * 299.99728 * 11 10 9 23 23 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 24 24 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 25 25 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 26 26 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 27 27 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 28 28 H 1.08997 * 109.47202 * 300.00345 * 8 6 5 29 29 H 1.08997 * 109.46905 * 60.00197 * 8 6 5 30 30 H 1.08998 * 109.47065 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47182 * 60.00291 * 9 8 6 32 32 H 1.08997 * 109.47204 * 300.00199 * 10 9 8 33 33 H 1.09001 * 109.46899 * 180.02562 * 10 9 8 34 34 H 1.08996 * 109.47400 * 55.00068 * 13 11 10 35 35 H 1.08999 * 109.47217 * 175.00228 * 13 11 10 36 36 H 0.97004 * 119.99885 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.47650 * 300.00333 * 22 11 10 38 38 H 1.08998 * 109.47381 * 180.02562 * 22 11 10 39 39 H 1.07995 * 126.12756 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 1 5.6128 -0.9800 0.4343 8 6 4.5000 -2.7820 0.8280 9 6 5.7432 -3.6739 0.8284 10 6 6.0845 -4.0737 -0.6085 11 6 6.3590 -2.8166 -1.4361 12 1 7.1971 -2.2715 -1.0018 13 6 6.6997 -3.2164 -2.8731 14 6 7.9918 -3.9921 -2.8858 15 1 8.5171 -4.1813 -1.9613 16 6 8.5026 -4.4610 -4.0775 17 7 9.6304 -5.1375 -4.0886 18 14 7.5936 -4.1343 -5.6764 19 1 8.0678 -2.8550 -6.2629 20 1 7.8546 -5.2426 -6.6296 21 1 6.1358 -4.0453 -5.4078 22 6 5.1159 -1.9247 -1.4366 23 6 2.3031 -1.0942 -0.0009 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 1.9950 2.1577 0.0033 28 1 4.2572 -2.4972 1.8517 29 1 3.6617 -3.3269 0.3940 30 1 5.5475 -4.5697 1.4177 31 1 6.5813 -3.1288 1.2627 32 1 5.2465 -4.6188 -1.0427 33 1 6.9700 -4.7095 -0.6081 34 1 5.8997 -3.8365 -3.2771 35 1 6.8082 -2.3200 -3.4836 36 1 9.9900 -5.4671 -4.9271 37 1 4.2778 -2.4698 -1.8709 38 1 5.3113 -1.0293 -2.0266 39 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260942529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:13 Heat of formation + Delta-G solvation = 43.760475 kcal Electronic energy + Delta-G solvation = -18072.118461 eV Core-core repulsion = 15401.024710 eV Total energy + Delta-G solvation = -2671.093750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25267 -38.40306 -34.01664 -32.68538 -31.69429 -31.25463 -29.22866 -27.29587 -26.29569 -23.19823 -22.66259 -21.26272 -20.41179 -19.71510 -19.08401 -16.77233 -16.68252 -15.13009 -14.66746 -14.56496 -14.28546 -14.07443 -13.58653 -13.27930 -13.16748 -12.91952 -12.77144 -12.38981 -12.20838 -12.02962 -11.89470 -11.48766 -11.07518 -10.90041 -10.74368 -10.58175 -10.44143 -10.23616 -9.78946 -9.71548 -9.64051 -9.17631 -9.09262 -8.54863 -8.23399 -6.05846 -4.03334 1.99068 2.58263 2.83147 3.29591 3.37286 3.40626 4.43944 4.49096 4.79787 4.84168 4.95362 5.08334 5.24473 5.26521 5.33787 5.40417 5.48744 5.59401 5.63609 5.65506 5.75931 5.81034 5.87148 5.91766 6.04968 6.11866 6.18093 6.25526 6.39813 6.49118 6.73135 6.77687 6.83561 6.98772 7.15233 7.23256 7.40219 7.77557 7.81100 8.51876 8.98841 9.57161 11.07391 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030002 B = 0.005059 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.047073 B = 5533.564737 C = 6033.618187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.254 4.254 3 C 0.040 3.960 4 N -0.297 5.297 5 N -0.356 5.356 6 C 0.160 3.840 7 H 0.100 0.900 8 C -0.123 4.123 9 C -0.116 4.116 10 C -0.110 4.110 11 C -0.067 4.067 12 H 0.066 0.934 13 C -0.008 4.008 14 C -0.516 4.516 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.123 4.123 23 C 0.057 3.943 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.178 0.822 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.016 0.984 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.141 6.865 9.770 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.266 4.266 3 C -0.146 4.146 4 N -0.118 5.118 5 N -0.137 5.137 6 C 0.059 3.941 7 H 0.118 0.882 8 C -0.162 4.162 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.086 4.086 12 H 0.085 0.915 13 C -0.046 4.046 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.162 4.162 23 C -0.090 4.090 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.195 0.805 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.652 7.056 9.656 18.913 hybrid contribution -1.212 -0.105 -1.027 1.592 sum -15.864 6.951 8.629 19.350 Atomic orbital electron populations 1.20003 0.89671 1.01742 1.01269 1.20093 0.96900 0.91969 1.17596 1.23717 0.90140 0.99579 1.01149 1.77346 1.21184 0.89370 1.23875 1.48974 1.05552 1.04308 1.54913 1.21526 0.84596 0.89418 0.98560 0.88166 1.21905 1.00127 0.94943 0.99210 1.21563 0.96217 0.98620 0.98971 1.21582 1.02374 0.98259 0.92478 1.20999 0.94418 0.94395 0.98829 0.91527 1.19607 0.97390 0.96190 0.91382 1.21119 1.05497 1.33634 0.95124 0.90764 1.25014 0.94696 0.94713 0.99009 1.69909 1.19868 1.37606 1.26893 0.86824 0.80942 0.77963 0.83821 1.20349 1.21422 1.19122 1.22124 1.00057 1.00632 0.93385 1.22262 0.84648 0.99905 1.02217 0.92412 0.92433 0.92179 0.80548 0.91704 0.91263 0.91598 0.91742 0.92599 0.89998 0.96603 0.97083 0.92773 0.91890 0.91580 0.81474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.37 36.01 0.37 -0.22 16 2 C -0.25 -3.02 6.10 -105.05 -0.64 -3.66 16 3 C 0.04 0.51 11.96 -17.36 -0.21 0.30 16 4 N -0.30 -4.64 12.58 30.62 0.39 -4.25 16 5 N -0.36 -5.16 3.53 -54.86 -0.19 -5.36 16 6 C 0.16 2.25 3.20 -67.93 -0.22 2.03 16 7 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 8 C -0.12 -1.47 4.85 -26.73 -0.13 -1.60 16 9 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 10 C -0.11 -1.83 5.01 -26.73 -0.13 -1.96 16 11 C -0.07 -1.25 2.14 -90.62 -0.19 -1.44 16 12 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 13 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 14 C -0.52 -14.20 8.96 -34.44 -0.31 -14.51 16 15 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 18 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 C -0.12 -2.00 4.81 -26.73 -0.13 -2.13 16 23 C 0.06 0.71 10.50 -17.22 -0.18 0.53 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.77 7.16 -51.93 -0.37 0.40 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.56 6.95 -51.93 -0.36 1.20 16 34 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.17 1.67 7.26 -52.49 -0.38 1.29 16 LS Contribution 310.46 15.07 4.68 4.68 Total: -1.00 -31.05 310.46 -7.65 -38.70 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.50 Total: -1.24 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -2.12 Total: -22.78 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.97 Total: -36.38 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.05 -7.65 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.457 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds