Wall clock time and date at job start Mon Mar 30 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46978 * 24.97557 * 6 5 4 8 8 C 1.53003 * 109.47305 * 144.97315 * 6 5 4 9 9 C 1.53003 * 109.47020 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47245 * 300.00079 * 9 8 6 11 11 C 1.52998 * 109.46877 * 60.00115 * 10 9 8 12 12 H 1.08997 * 109.47134 * 60.00042 * 11 10 9 13 13 C 1.53001 * 109.46877 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46959 * 294.99876 * 13 11 10 15 15 H 1.07997 * 119.99916 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99536 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99377 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00444 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47157 * 89.99592 * 18 16 14 20 20 H 1.48496 * 109.47109 * 209.99986 * 18 16 14 21 21 H 1.48504 * 109.47158 * 330.00113 * 18 16 14 22 22 C 1.52994 * 109.47406 * 299.99728 * 11 10 9 23 23 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 24 24 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 25 25 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 26 26 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 27 27 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 28 28 H 1.08997 * 109.47202 * 300.00345 * 8 6 5 29 29 H 1.08997 * 109.46905 * 60.00197 * 8 6 5 30 30 H 1.08998 * 109.47065 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47182 * 60.00291 * 9 8 6 32 32 H 1.08997 * 109.47204 * 300.00199 * 10 9 8 33 33 H 1.09001 * 109.46899 * 180.02562 * 10 9 8 34 34 H 1.08996 * 109.47400 * 55.00068 * 13 11 10 35 35 H 1.08999 * 109.47217 * 175.00228 * 13 11 10 36 36 H 0.97004 * 119.99885 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.47650 * 300.00333 * 22 11 10 38 38 H 1.08998 * 109.47381 * 180.02562 * 22 11 10 39 39 H 1.07995 * 126.12756 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 1 5.6128 -0.9800 0.4343 8 6 4.5000 -2.7820 0.8280 9 6 5.7432 -3.6739 0.8284 10 6 6.0845 -4.0737 -0.6085 11 6 6.3590 -2.8166 -1.4361 12 1 7.1971 -2.2715 -1.0018 13 6 6.6997 -3.2164 -2.8731 14 6 7.9918 -3.9921 -2.8858 15 1 8.5171 -4.1813 -1.9613 16 6 8.5026 -4.4610 -4.0775 17 7 9.6304 -5.1375 -4.0886 18 14 7.5936 -4.1343 -5.6764 19 1 8.0678 -2.8550 -6.2629 20 1 7.8546 -5.2426 -6.6296 21 1 6.1358 -4.0453 -5.4078 22 6 5.1159 -1.9247 -1.4366 23 6 2.3031 -1.0942 -0.0009 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 1.9950 2.1577 0.0033 28 1 4.2572 -2.4972 1.8517 29 1 3.6617 -3.3269 0.3940 30 1 5.5475 -4.5697 1.4177 31 1 6.5813 -3.1288 1.2627 32 1 5.2465 -4.6188 -1.0427 33 1 6.9700 -4.7095 -0.6081 34 1 5.8997 -3.8365 -3.2771 35 1 6.8082 -2.3200 -3.4836 36 1 9.9900 -5.4671 -4.9271 37 1 4.2778 -2.4698 -1.8709 38 1 5.3113 -1.0293 -2.0266 39 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:12 Heat of formation + Delta-G solvation = 26.285412 kcal Electronic energy + Delta-G solvation = -18072.876236 eV Core-core repulsion = 15401.024710 eV Total energy + Delta-G solvation = -2671.851526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23247 -39.66747 -35.62341 -34.18090 -33.06662 -32.36823 -30.43543 -28.95653 -27.16106 -24.79708 -23.91745 -22.50031 -21.40939 -21.04762 -20.29977 -18.90039 -17.72858 -16.40429 -16.12135 -15.86863 -15.58577 -15.30984 -14.84244 -14.71412 -14.25910 -14.09348 -13.80737 -13.77297 -13.51304 -13.36896 -13.00979 -12.67876 -12.50785 -12.32545 -12.24859 -11.97434 -11.75258 -11.70886 -11.45590 -11.24427 -11.07027 -10.97214 -10.73878 -10.30173 -9.17414 -8.28295 -6.30262 1.02364 1.33418 1.34433 1.45762 1.58515 1.92503 2.34903 3.07056 3.46770 3.70144 3.87180 3.97287 4.01302 4.18756 4.21737 4.34842 4.46458 4.50843 4.53228 4.59259 4.65103 4.87729 4.90703 4.99658 5.01794 5.03333 5.05537 5.09411 5.24503 5.30115 5.35251 5.36809 5.44176 5.53379 5.68343 5.70778 5.84852 6.21019 6.31214 6.76926 6.83838 7.33543 8.88147 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030002 B = 0.005059 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.047073 B = 5533.564737 C = 6033.618187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.257 4.257 3 C 0.037 3.963 4 N -0.344 5.344 5 N -0.370 5.370 6 C 0.166 3.834 7 H 0.089 0.911 8 C -0.112 4.112 9 C -0.107 4.107 10 C -0.105 4.105 11 C -0.063 4.063 12 H 0.052 0.948 13 C -0.007 4.007 14 C -0.517 4.517 15 H 0.040 0.960 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.249 1.249 22 C -0.111 4.111 23 C 0.049 3.951 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.202 0.798 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.324 7.287 10.189 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.268 4.268 3 C -0.149 4.149 4 N -0.165 5.165 5 N -0.151 5.151 6 C 0.064 3.936 7 H 0.107 0.893 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.143 4.143 11 C -0.082 4.082 12 H 0.070 0.930 13 C -0.044 4.044 14 C -0.555 4.555 15 H 0.059 0.941 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.173 1.173 22 C -0.149 4.149 23 C -0.097 4.097 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.219 0.781 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -17.858 7.490 10.090 21.836 hybrid contribution -0.200 -0.204 -1.111 1.147 sum -18.058 7.287 8.979 21.444 Atomic orbital electron populations 1.20067 0.87328 1.03049 1.01961 1.20538 0.98501 0.91338 1.16464 1.24275 0.89646 1.01209 0.99726 1.77303 1.22939 0.90315 1.25925 1.48922 1.06068 1.04020 1.56088 1.21348 0.84836 0.90362 0.97013 0.89307 1.21838 0.99801 0.93489 0.99908 1.21479 0.96891 0.99862 0.96262 1.21485 1.01128 0.96691 0.94990 1.20861 0.95375 0.95789 0.96219 0.92976 1.19571 0.95129 0.95226 0.94498 1.21432 1.06850 1.33410 0.93853 0.94138 1.25921 0.95571 0.94670 1.02949 1.70056 1.21832 1.39357 1.27961 0.85776 0.80450 0.77945 0.79179 1.19797 1.20911 1.17291 1.21911 0.98696 0.99186 0.95141 1.22812 0.83889 1.01420 1.01546 0.91923 0.91141 0.90949 0.78137 0.89906 0.89606 0.89309 0.91974 0.91931 0.93318 0.96226 0.97505 0.92648 0.91204 0.93346 0.78911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.37 71.24 0.74 -0.17 16 2 C -0.26 -5.37 6.10 -20.14 -0.12 -5.49 16 3 C 0.04 0.87 11.96 85.23 1.02 1.89 16 4 N -0.34 -10.36 12.58 -57.02 -0.72 -11.07 16 5 N -0.37 -10.03 3.53 -327.49 -1.16 -11.19 16 6 C 0.17 4.43 3.20 44.99 0.14 4.58 16 7 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 8 C -0.11 -2.34 4.85 30.60 0.15 -2.20 16 9 C -0.11 -2.57 5.92 30.60 0.18 -2.39 16 10 C -0.11 -3.48 5.01 30.59 0.15 -3.33 16 11 C -0.06 -2.36 2.14 -10.80 -0.02 -2.39 16 12 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 14 C -0.52 -29.36 8.96 25.60 0.23 -29.13 16 15 H 0.04 2.50 7.30 -2.91 -0.02 2.48 16 16 C 0.01 0.32 5.47 84.66 0.46 0.78 16 17 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 18 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 22 C -0.11 -3.49 4.81 30.59 0.15 -3.34 16 23 C 0.05 1.09 10.50 83.54 0.88 1.97 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.20 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.56 7.16 -2.39 -0.02 1.54 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.92 6.95 -2.39 -0.02 1.90 16 34 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 35 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 36 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.19 3.05 7.26 -2.91 -0.02 3.03 16 Total: -1.00 -68.79 310.46 5.32 -63.47 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.95 Total: 10.86 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 4.06 Total: -39.42 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.57 Total: -81.61 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -68.79 5.32 -63.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.755 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds