Wall clock time and date at job start Mon Mar 30 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39866 * 126.03802 * 2 1 4 4 N 1.30843 * 108.20008 * 179.73847 * 3 2 1 5 5 N 1.40081 * 108.20418 * 0.40955 * 4 3 2 6 6 C 1.46500 * 126.03534 * 179.85425 * 5 4 3 7 7 H 1.09007 * 109.47167 * 180.23490 * 6 5 4 8 8 C 1.53006 * 109.47337 * 60.23849 * 6 5 4 9 9 C 1.53002 * 109.46842 * 299.99879 * 8 6 5 10 10 C 1.53004 * 109.47243 * 300.00178 * 9 8 6 11 11 C 1.52995 * 109.47049 * 59.99953 * 10 9 8 12 12 C 1.52993 * 109.47195 * 300.23745 * 6 5 4 13 13 H 1.09001 * 109.47375 * 179.97438 * 12 6 5 14 14 C 1.53006 * 109.47243 * 299.99923 * 12 6 5 15 15 C 1.50699 * 109.47367 * 184.99862 * 14 12 6 16 16 H 1.07997 * 119.99934 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99785 * 179.97438 * 15 14 12 18 18 N 1.31509 * 119.99987 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99590 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46818 * 90.00653 * 19 17 15 21 21 H 1.48498 * 109.47026 * 209.99899 * 19 17 15 22 22 H 1.48490 * 109.47508 * 330.00410 * 19 17 15 23 23 C 1.34945 * 107.92758 * 359.58826 * 5 4 3 24 24 H 1.09000 * 109.47188 * 269.99472 * 1 2 3 25 25 H 1.08999 * 109.47141 * 30.00238 * 1 2 3 26 26 H 1.09003 * 109.47047 * 149.99864 * 1 2 3 27 27 H 1.07994 * 125.89859 * 0.02562 * 3 2 1 28 28 H 1.08992 * 109.47503 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47176 * 59.99784 * 8 6 5 30 30 H 1.09000 * 109.47317 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46891 * 60.00069 * 9 8 6 32 32 H 1.09000 * 109.46944 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.46612 * 300.00005 * 10 9 8 34 34 H 1.09001 * 109.47324 * 59.99962 * 11 10 9 35 35 H 1.08998 * 109.46879 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.46932 * 305.00455 * 14 12 6 37 37 H 1.09007 * 109.46887 * 64.99673 * 14 12 6 38 38 H 0.97003 * 119.99931 * 179.97438 * 18 17 15 39 39 H 1.08004 * 126.13156 * 180.22869 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5844 -0.6706 0.0000 6 6 4.7746 -1.5248 0.0004 7 1 4.4705 -2.5716 -0.0091 8 6 5.6023 -1.2456 1.2566 9 6 6.0291 0.2236 1.2700 10 6 6.8711 0.5215 0.0277 11 6 6.0433 0.2423 -1.2283 12 6 5.6166 -1.2269 -1.2417 13 1 6.5024 -1.8622 -1.2412 14 6 4.7889 -1.5062 -2.4980 15 6 5.6545 -1.3313 -3.7191 16 1 6.6914 -1.0496 -3.6101 17 6 5.1230 -1.5319 -4.9753 18 7 3.8605 -1.8755 -5.1080 19 14 6.1959 -1.3144 -6.4890 20 1 6.8422 -2.6079 -6.8276 21 1 5.3573 -0.8666 -7.6298 22 1 7.2408 -0.2962 -6.2129 23 6 2.3032 -1.0942 -0.0001 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9950 2.1577 0.0004 28 1 6.4880 -1.8808 1.2568 29 1 5.0024 -1.4578 2.1416 30 1 6.6183 0.4227 2.1651 31 1 5.1435 0.8592 1.2697 32 1 7.1747 1.5683 0.0371 33 1 7.7566 -0.1141 0.0281 34 1 5.1578 0.8778 -1.2287 35 1 6.6434 0.4541 -2.1133 36 1 4.4105 -2.5278 -2.4640 37 1 3.9514 -0.8099 -2.5435 38 1 3.4865 -2.0163 -5.9918 39 1 1.9724 -2.1223 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260958267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:56 Heat of formation + Delta-G solvation = 56.225324 kcal Electronic energy + Delta-G solvation = -18960.548188 eV Core-core repulsion = 16289.994954 eV Total energy + Delta-G solvation = -2670.553234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95781 -37.91921 -33.35832 -32.51718 -31.31376 -31.01996 -29.12231 -26.78957 -25.61000 -23.25445 -22.63125 -20.57043 -20.36428 -19.63887 -18.81217 -16.35338 -15.73419 -14.93785 -14.91336 -14.29965 -14.09316 -13.44125 -13.19307 -12.91260 -12.87894 -12.62577 -12.23805 -12.03696 -11.80078 -11.71832 -11.51497 -11.29365 -11.08894 -10.82298 -10.66357 -10.51406 -10.20297 -9.96983 -9.59073 -9.34026 -9.10024 -8.95869 -8.60891 -8.32792 -7.75344 -5.97734 -3.99184 2.47263 3.06915 3.28508 3.32131 3.38695 3.42176 4.46821 4.89392 5.13869 5.21150 5.33108 5.36268 5.38308 5.63232 5.71221 5.72404 5.81617 5.88912 5.96361 5.98545 6.04521 6.09678 6.25496 6.32395 6.35095 6.38583 6.57101 6.60227 6.74660 6.77931 7.05717 7.11720 7.17751 7.45513 7.63821 7.64934 7.86380 8.01558 8.28082 8.44174 9.06545 9.64045 11.13467 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.008117 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.631283 B = 3448.737849 C = 4387.728305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.253 4.253 3 C 0.029 3.971 4 N -0.276 5.276 5 N -0.338 5.338 6 C 0.162 3.838 7 H 0.092 0.908 8 C -0.124 4.124 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.113 4.113 12 C -0.088 4.088 13 H 0.070 0.930 14 C 0.032 3.968 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.059 3.941 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.172 0.828 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.009 0.991 37 H 0.020 0.980 38 H 0.259 0.741 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 2.137 12.837 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.265 4.265 3 C -0.156 4.156 4 N -0.098 5.098 5 N -0.119 5.119 6 C 0.060 3.940 7 H 0.110 0.890 8 C -0.162 4.162 9 C -0.163 4.163 10 C -0.150 4.150 11 C -0.150 4.150 12 C -0.107 4.107 13 H 0.088 0.912 14 C -0.005 4.005 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.189 0.811 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.672 2.359 12.707 12.942 hybrid contribution -0.318 -0.350 -1.071 1.170 sum -0.990 2.009 11.637 11.850 Atomic orbital electron populations 1.19963 0.90140 1.01805 1.00521 1.19952 0.96562 0.92074 1.17886 1.23682 0.90626 0.99263 1.02004 1.77124 1.19973 0.89582 1.23150 1.48578 1.04943 1.04198 1.54173 1.21660 0.83312 0.91547 0.97479 0.88962 1.21838 0.99432 0.98647 0.96263 1.21709 1.01399 0.96101 0.97131 1.21489 0.97800 0.99939 0.95732 1.21677 1.00904 0.96557 0.95897 1.21548 0.97840 0.97394 0.93880 0.91163 1.19085 0.94979 0.96333 0.90085 1.21194 0.96752 1.46327 0.90954 0.92644 1.25004 0.94927 0.95442 0.99039 1.69967 1.12559 1.47762 1.23055 0.86643 0.80460 0.78334 0.82870 1.20755 1.21287 1.19905 1.22218 0.84643 0.99670 1.02328 0.92980 0.92358 0.92520 0.81114 0.90692 0.92517 0.93587 0.89103 0.93059 0.93429 0.89552 0.91840 0.97299 0.96198 0.93128 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.37 36.01 0.37 -0.45 16 2 C -0.25 -4.01 6.10 -105.05 -0.64 -4.65 16 3 C 0.03 0.48 11.96 -17.36 -0.21 0.27 16 4 N -0.28 -5.06 6.71 30.62 0.21 -4.85 16 5 N -0.34 -6.03 2.58 -54.86 -0.14 -6.17 16 6 C 0.16 2.76 2.85 -67.93 -0.19 2.57 16 7 H 0.09 1.46 8.07 -51.92 -0.42 1.04 16 8 C -0.12 -1.78 5.64 -26.73 -0.15 -1.93 16 9 C -0.13 -1.90 5.64 -26.73 -0.15 -2.05 16 10 C -0.11 -1.83 5.92 -26.73 -0.16 -1.99 16 11 C -0.11 -2.26 4.73 -26.73 -0.13 -2.39 16 12 C -0.09 -1.79 1.96 -90.62 -0.18 -1.96 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C 0.03 0.83 4.21 -27.88 -0.12 0.71 16 15 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 16 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.06 0.98 11.36 -17.22 -0.20 0.78 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.17 2.29 8.06 -52.49 -0.42 1.86 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.51 5.40 -51.93 -0.28 1.23 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.87 5.38 -51.93 -0.28 1.59 16 35 H 0.06 1.39 6.95 -51.93 -0.36 1.03 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.02 0.57 7.76 -51.93 -0.40 0.16 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.16 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -31.20 304.50 -8.09 -39.29 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.32 Total: 0.94 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -2.13 Total: -24.36 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.80 Total: -37.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.20 -8.09 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.513 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds