Wall clock time and date at job start Mon Mar 30 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39866 * 126.03802 * 2 1 4 4 N 1.30843 * 108.20008 * 179.73847 * 3 2 1 5 5 N 1.40081 * 108.20418 * 0.40955 * 4 3 2 6 6 C 1.46500 * 126.03534 * 179.85425 * 5 4 3 7 7 H 1.09007 * 109.47167 * 180.23490 * 6 5 4 8 8 C 1.53006 * 109.47337 * 60.23849 * 6 5 4 9 9 C 1.53002 * 109.46842 * 299.99879 * 8 6 5 10 10 C 1.53004 * 109.47243 * 300.00178 * 9 8 6 11 11 C 1.52995 * 109.47049 * 59.99953 * 10 9 8 12 12 C 1.52993 * 109.47195 * 300.23745 * 6 5 4 13 13 H 1.09001 * 109.47375 * 179.97438 * 12 6 5 14 14 C 1.53006 * 109.47243 * 299.99923 * 12 6 5 15 15 C 1.50699 * 109.47367 * 184.99862 * 14 12 6 16 16 H 1.07997 * 119.99934 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99785 * 179.97438 * 15 14 12 18 18 N 1.31509 * 119.99987 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99590 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46818 * 90.00653 * 19 17 15 21 21 H 1.48498 * 109.47026 * 209.99899 * 19 17 15 22 22 H 1.48490 * 109.47508 * 330.00410 * 19 17 15 23 23 C 1.34945 * 107.92758 * 359.58826 * 5 4 3 24 24 H 1.09000 * 109.47188 * 269.99472 * 1 2 3 25 25 H 1.08999 * 109.47141 * 30.00238 * 1 2 3 26 26 H 1.09003 * 109.47047 * 149.99864 * 1 2 3 27 27 H 1.07994 * 125.89859 * 0.02562 * 3 2 1 28 28 H 1.08992 * 109.47503 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47176 * 59.99784 * 8 6 5 30 30 H 1.09000 * 109.47317 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46891 * 60.00069 * 9 8 6 32 32 H 1.09000 * 109.46944 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.46612 * 300.00005 * 10 9 8 34 34 H 1.09001 * 109.47324 * 59.99962 * 11 10 9 35 35 H 1.08998 * 109.46879 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.46932 * 305.00455 * 14 12 6 37 37 H 1.09007 * 109.46887 * 64.99673 * 14 12 6 38 38 H 0.97003 * 119.99931 * 179.97438 * 18 17 15 39 39 H 1.08004 * 126.13156 * 180.22869 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5844 -0.6706 0.0000 6 6 4.7746 -1.5248 0.0004 7 1 4.4705 -2.5716 -0.0091 8 6 5.6023 -1.2456 1.2566 9 6 6.0291 0.2236 1.2700 10 6 6.8711 0.5215 0.0277 11 6 6.0433 0.2423 -1.2283 12 6 5.6166 -1.2269 -1.2417 13 1 6.5024 -1.8622 -1.2412 14 6 4.7889 -1.5062 -2.4980 15 6 5.6545 -1.3313 -3.7191 16 1 6.6914 -1.0496 -3.6101 17 6 5.1230 -1.5319 -4.9753 18 7 3.8605 -1.8755 -5.1080 19 14 6.1959 -1.3144 -6.4890 20 1 6.8422 -2.6079 -6.8276 21 1 5.3573 -0.8666 -7.6298 22 1 7.2408 -0.2962 -6.2129 23 6 2.3032 -1.0942 -0.0001 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9950 2.1577 0.0004 28 1 6.4880 -1.8808 1.2568 29 1 5.0024 -1.4578 2.1416 30 1 6.6183 0.4227 2.1651 31 1 5.1435 0.8592 1.2697 32 1 7.1747 1.5683 0.0371 33 1 7.7566 -0.1141 0.0281 34 1 5.1578 0.8778 -1.2287 35 1 6.6434 0.4541 -2.1133 36 1 4.4105 -2.5278 -2.4640 37 1 3.9514 -0.8099 -2.5435 38 1 3.4865 -2.0163 -5.9918 39 1 1.9724 -2.1223 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260958267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:56 Heat of formation + Delta-G solvation = 40.053061 kcal Electronic energy + Delta-G solvation = -18961.249470 eV Core-core repulsion = 16289.994954 eV Total energy + Delta-G solvation = -2671.254516 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.25268 -39.32862 -35.37373 -33.81260 -32.93362 -32.41983 -30.44804 -28.59391 -26.87699 -25.13538 -23.95858 -22.05147 -21.81864 -20.91057 -20.21880 -18.50817 -17.03861 -16.68522 -16.37816 -15.94262 -15.40986 -14.73596 -14.61265 -14.39052 -14.13468 -14.05680 -13.81930 -13.59555 -13.25284 -13.04056 -12.89566 -12.88059 -12.63109 -12.52516 -12.35890 -11.98930 -11.81398 -11.65342 -11.37538 -10.89209 -10.82868 -10.57384 -10.51218 -9.99034 -9.01080 -8.20526 -6.29875 1.17640 1.35333 1.36745 1.47424 1.80299 2.04036 2.38132 3.12459 3.59904 3.86961 3.95081 4.07902 4.15640 4.34999 4.39159 4.45837 4.57820 4.63978 4.70484 4.74097 4.78037 4.92663 5.01508 5.04632 5.09960 5.14624 5.26101 5.33397 5.40505 5.42451 5.46005 5.49437 5.57340 5.66954 5.75715 5.84290 6.12037 6.25387 6.38439 6.85498 6.99094 7.38106 8.90854 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.008117 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.631283 B = 3448.737849 C = 4387.728305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.258 4.258 3 C 0.017 3.983 4 N -0.301 5.301 5 N -0.349 5.349 6 C 0.160 3.840 7 H 0.102 0.898 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.104 4.104 11 C -0.109 4.109 12 C -0.081 4.081 13 H 0.075 0.925 14 C 0.048 3.952 15 C -0.531 4.531 16 H 0.057 0.943 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.958 3.042 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.267 1.267 23 C 0.037 3.963 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.196 0.804 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.034 0.966 36 H -0.016 1.016 37 H -0.018 1.018 38 H 0.261 0.739 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 2.181 13.946 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.270 4.270 3 C -0.168 4.168 4 N -0.123 5.123 5 N -0.131 5.131 6 C 0.058 3.942 7 H 0.120 0.880 8 C -0.153 4.153 9 C -0.160 4.160 10 C -0.141 4.141 11 C -0.146 4.146 12 C -0.100 4.100 13 H 0.093 0.907 14 C 0.011 3.989 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.783 3.217 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.109 4.109 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.213 0.787 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.002 0.998 37 H 0.000 1.000 38 H 0.070 0.930 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.110 2.403 13.831 14.038 hybrid contribution -0.621 -0.339 -1.442 1.606 sum -0.511 2.063 12.389 12.570 Atomic orbital electron populations 1.20017 0.87847 1.02243 1.01979 1.20412 0.98247 0.91567 1.16735 1.24222 0.90408 1.00728 1.01404 1.77075 1.21070 0.90063 1.24058 1.48659 1.05403 1.04175 1.54840 1.21675 0.83304 0.92120 0.97095 0.87993 1.21819 0.99857 0.98550 0.95097 1.21668 1.00839 0.96249 0.97276 1.21412 0.97702 1.00739 0.94292 1.21566 1.00303 0.95870 0.96899 1.21373 0.97645 0.97799 0.93149 0.90703 1.18844 0.94119 0.93605 0.92376 1.21614 0.97175 1.45894 0.92224 0.92445 1.25918 0.96267 0.95094 1.02489 1.70104 1.14377 1.48821 1.23864 0.85549 0.78686 0.78798 0.78658 1.19506 1.20978 1.19102 1.22715 0.84592 1.00980 1.02644 0.90929 0.91604 0.92379 0.78745 0.88720 0.90868 0.90996 0.90679 0.92338 0.92098 0.91430 0.94682 0.99765 0.99990 0.93029 0.80160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.48 10.37 71.24 0.74 -0.74 16 2 C -0.26 -8.05 6.10 -20.14 -0.12 -8.17 16 3 C 0.02 0.55 11.96 85.23 1.02 1.57 16 4 N -0.30 -11.05 6.71 -57.03 -0.38 -11.43 16 5 N -0.35 -12.45 2.58 -327.48 -0.84 -13.30 16 6 C 0.16 5.34 2.85 44.99 0.13 5.47 16 7 H 0.10 3.15 8.07 -2.38 -0.02 3.13 16 8 C -0.12 -3.03 5.64 30.60 0.17 -2.86 16 9 C -0.12 -3.42 5.64 30.60 0.17 -3.24 16 10 C -0.10 -3.23 5.92 30.59 0.18 -3.05 16 11 C -0.11 -4.39 4.73 30.59 0.14 -4.25 16 12 C -0.08 -3.31 1.96 -10.79 -0.02 -3.33 16 13 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 14 C 0.05 2.54 4.21 29.85 0.13 2.66 16 15 C -0.53 -30.68 8.41 25.60 0.22 -30.47 16 16 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 17 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 18 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 19 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.04 1.24 11.36 83.54 0.95 2.19 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.20 5.07 8.06 -2.91 -0.02 5.04 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.39 5.40 -2.39 -0.01 2.38 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 3.00 5.38 -2.39 -0.01 2.99 16 35 H 0.03 1.56 6.95 -2.39 -0.02 1.54 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H -0.02 -1.11 7.76 -2.38 -0.02 -1.13 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.18 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -68.67 304.50 6.26 -62.42 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.01 Total: 16.14 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 4.16 Total: -43.77 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -0.94 Total: -82.27 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.67 6.26 -62.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.468 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds