Wall clock time and date at job start Mon Mar 30 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39865 * 126.03948 * 2 1 4 4 N 1.30840 * 108.20336 * 179.73950 * 3 2 1 5 5 N 1.40083 * 108.20246 * 0.40538 * 4 3 2 6 6 C 1.46506 * 126.03845 * 179.85693 * 5 4 3 7 7 H 1.09000 * 109.46872 * 24.68710 * 6 5 4 8 8 C 1.52997 * 109.47277 * 144.68673 * 6 5 4 9 9 C 1.52996 * 109.47165 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46972 * 300.00293 * 9 8 6 11 11 C 1.52997 * 109.47415 * 59.99860 * 10 9 8 12 12 C 1.52999 * 109.46691 * 264.69080 * 6 5 4 13 13 H 1.09000 * 109.47160 * 299.99453 * 12 6 5 14 14 C 1.52997 * 109.47592 * 59.99786 * 12 6 5 15 15 C 1.50692 * 109.47279 * 184.99832 * 14 12 6 16 16 H 1.08008 * 120.00068 * 359.97438 * 15 14 12 17 17 C 1.37883 * 120.00230 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99729 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99917 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46762 * 90.00605 * 19 17 15 21 21 H 1.48498 * 109.46761 * 209.99798 * 19 17 15 22 22 H 1.48496 * 109.47373 * 330.00223 * 19 17 15 23 23 C 1.34949 * 107.92593 * 359.58681 * 5 4 3 24 24 H 1.08998 * 109.47579 * 269.99761 * 1 2 3 25 25 H 1.09000 * 109.47170 * 30.00608 * 1 2 3 26 26 H 1.09007 * 109.47282 * 149.99855 * 1 2 3 27 27 H 1.08001 * 125.90207 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 60.00200 * 8 6 5 29 29 H 1.09001 * 109.47375 * 300.00183 * 8 6 5 30 30 H 1.08992 * 109.47534 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.47134 * 59.99508 * 9 8 6 32 32 H 1.09000 * 109.46986 * 299.99742 * 10 9 8 33 33 H 1.09001 * 109.47601 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.46922 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47140 * 59.99976 * 11 10 9 36 36 H 1.09001 * 109.46992 * 305.00257 * 14 12 6 37 37 H 1.08998 * 109.47097 * 64.99445 * 14 12 6 38 38 H 0.96996 * 119.99975 * 180.02562 * 18 17 15 39 39 H 1.08001 * 126.12643 * 180.21893 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5844 -0.6706 0.0000 6 6 4.7745 -1.5249 0.0005 7 1 5.6127 -0.9799 0.4348 8 6 4.4997 -2.7819 0.8284 9 6 5.7429 -3.6737 0.8294 10 6 6.0847 -4.0738 -0.6073 11 6 6.3595 -2.8168 -1.4351 12 6 5.1157 -1.9248 -1.4363 13 1 4.2776 -2.4698 -1.8705 14 6 5.3906 -0.6679 -2.2641 15 6 5.6058 -1.0525 -3.7051 16 1 5.5524 -2.0899 -4.0010 17 6 5.8709 -0.0801 -4.6461 18 7 5.9365 1.1830 -4.2858 19 14 6.1384 -0.5571 -6.4322 20 1 4.8374 -0.5440 -7.1481 21 1 7.0642 0.4130 -7.0702 22 1 6.7262 -1.9192 -6.4982 23 6 2.3031 -1.0942 0.0001 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.9951 2.1578 -0.0004 28 1 3.6615 -3.3268 0.3941 29 1 4.2566 -2.4969 1.8520 30 1 5.5470 -4.5694 1.4187 31 1 6.5808 -3.1285 1.2638 32 1 5.2468 -4.6190 -1.0418 33 1 6.9701 -4.7095 -0.6066 34 1 6.6026 -3.1018 -2.4587 35 1 7.1975 -2.2716 -1.0006 36 1 4.5386 0.0082 -2.1918 37 1 6.2826 -0.1701 -1.8837 38 1 6.1226 1.8671 -4.9477 39 1 1.9723 -2.1223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260958268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:59 Heat of formation + Delta-G solvation = 45.416540 kcal Electronic energy + Delta-G solvation = -18637.024520 eV Core-core repulsion = 15966.002582 eV Total energy + Delta-G solvation = -2671.021938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84668 -38.20702 -33.39744 -32.90376 -31.23704 -31.16882 -28.87149 -26.84419 -25.76255 -23.35936 -22.53580 -20.55528 -20.33502 -19.84404 -18.88503 -16.54178 -16.17670 -14.79830 -14.52050 -14.35102 -13.99207 -13.95065 -13.61194 -12.98155 -12.86289 -12.64843 -12.34777 -12.09874 -11.91780 -11.72483 -11.53676 -11.37901 -10.95310 -10.87000 -10.67763 -10.52190 -10.23002 -10.06335 -9.94153 -9.74044 -9.15019 -9.06381 -8.67533 -8.28801 -7.75774 -5.92780 -3.95483 2.47932 3.05558 3.31747 3.33554 3.39839 3.41984 4.48394 4.79444 4.95122 5.07012 5.20764 5.28798 5.41349 5.47827 5.57650 5.60836 5.65255 5.77255 5.80915 5.85746 5.88280 5.94099 6.05849 6.17369 6.24149 6.26986 6.35247 6.44536 6.48257 6.57628 6.87629 6.94772 7.09659 7.20915 7.62147 7.75886 7.91495 8.08567 8.31978 8.46976 9.11245 9.67187 11.17880 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.008420 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.194395 B = 3324.769351 C = 4583.995633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.255 4.255 3 C 0.035 3.965 4 N -0.274 5.274 5 N -0.345 5.345 6 C 0.163 3.837 7 H 0.095 0.905 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.125 4.125 11 C -0.102 4.102 12 C -0.089 4.089 13 H 0.060 0.940 14 C 0.031 3.969 15 C -0.518 4.518 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.052 3.948 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.174 0.826 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.014 0.986 38 H 0.259 0.741 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 -7.812 10.896 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.267 4.267 3 C -0.151 4.151 4 N -0.095 5.095 5 N -0.126 5.126 6 C 0.061 3.939 7 H 0.113 0.887 8 C -0.164 4.164 9 C -0.149 4.149 10 C -0.162 4.162 11 C -0.140 4.140 12 C -0.108 4.108 13 H 0.078 0.922 14 C -0.006 4.006 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.095 4.095 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.191 0.809 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.478 -7.343 10.836 13.834 hybrid contribution -0.718 -0.366 -1.191 1.438 sum -5.196 -7.709 9.645 13.396 Atomic orbital electron populations 1.19959 0.90079 1.01692 1.00622 1.19991 0.96569 0.92103 1.18076 1.23650 0.90309 0.99375 1.01754 1.77453 1.20773 0.89012 1.22232 1.48705 1.05079 1.04383 1.54412 1.21554 0.84815 0.88698 0.98818 0.88736 1.21904 0.99363 0.95609 0.99563 1.21461 0.97060 0.98686 0.97719 1.21672 1.01018 0.98621 0.94932 1.21511 0.97518 0.94259 1.00753 1.21648 0.97475 0.99910 0.91795 0.92152 1.19108 0.97521 0.90700 0.93317 1.21199 1.48296 0.93031 0.93123 0.92844 1.25008 0.95690 0.95029 0.98620 1.69991 1.49269 0.99766 1.33808 0.86679 0.77974 0.78215 0.85624 1.20811 1.21273 1.19957 1.22090 0.84881 0.99457 1.03122 0.92895 0.92267 0.92676 0.80908 0.91340 0.91765 0.91872 0.91742 0.92248 0.92276 0.90347 0.92373 0.95417 0.96795 0.93138 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.37 36.00 0.37 -0.43 16 2 C -0.26 -4.13 6.10 -105.06 -0.64 -4.77 16 3 C 0.04 0.63 11.96 -17.37 -0.21 0.42 16 4 N -0.27 -5.78 11.76 30.62 0.36 -5.42 16 5 N -0.35 -6.52 2.87 -54.86 -0.16 -6.68 16 6 C 0.16 2.85 2.64 -67.93 -0.18 2.67 16 7 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 8 C -0.13 -1.66 4.84 -26.73 -0.13 -1.79 16 9 C -0.11 -1.32 5.92 -26.73 -0.16 -1.47 16 10 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 11 C -0.10 -1.81 5.02 -26.70 -0.13 -1.94 16 12 C -0.09 -1.79 1.85 -90.59 -0.17 -1.96 16 13 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.03 0.81 4.36 -27.89 -0.12 0.68 16 15 C -0.52 -14.74 8.41 -34.44 -0.29 -15.03 16 16 H 0.05 1.47 7.06 -52.48 -0.37 1.09 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.05 0.85 10.50 -17.22 -0.18 0.67 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 28 H 0.07 0.85 7.16 -51.93 -0.37 0.48 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.81 6.76 -51.93 -0.35 0.46 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.16 2.14 7.26 -52.49 -0.38 1.76 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -32.63 311.38 -7.95 -40.58 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.47 Total: -0.22 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.09 Total: -23.17 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.94 Total: -38.94 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.63 -7.95 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.998 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds