Wall clock time and date at job start Mon Mar 30 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39865 * 126.03948 * 2 1 4 4 N 1.30840 * 108.20336 * 179.73950 * 3 2 1 5 5 N 1.40083 * 108.20246 * 0.40538 * 4 3 2 6 6 C 1.46506 * 126.03845 * 179.85693 * 5 4 3 7 7 H 1.09000 * 109.46872 * 24.68710 * 6 5 4 8 8 C 1.52997 * 109.47277 * 144.68673 * 6 5 4 9 9 C 1.52996 * 109.47165 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46972 * 300.00293 * 9 8 6 11 11 C 1.52997 * 109.47415 * 59.99860 * 10 9 8 12 12 C 1.52999 * 109.46691 * 264.69080 * 6 5 4 13 13 H 1.09000 * 109.47160 * 299.99453 * 12 6 5 14 14 C 1.52997 * 109.47592 * 59.99786 * 12 6 5 15 15 C 1.50692 * 109.47279 * 184.99832 * 14 12 6 16 16 H 1.08008 * 120.00068 * 359.97438 * 15 14 12 17 17 C 1.37883 * 120.00230 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99729 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99917 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46762 * 90.00605 * 19 17 15 21 21 H 1.48498 * 109.46761 * 209.99798 * 19 17 15 22 22 H 1.48496 * 109.47373 * 330.00223 * 19 17 15 23 23 C 1.34949 * 107.92593 * 359.58681 * 5 4 3 24 24 H 1.08998 * 109.47579 * 269.99761 * 1 2 3 25 25 H 1.09000 * 109.47170 * 30.00608 * 1 2 3 26 26 H 1.09007 * 109.47282 * 149.99855 * 1 2 3 27 27 H 1.08001 * 125.90207 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 60.00200 * 8 6 5 29 29 H 1.09001 * 109.47375 * 300.00183 * 8 6 5 30 30 H 1.08992 * 109.47534 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.47134 * 59.99508 * 9 8 6 32 32 H 1.09000 * 109.46986 * 299.99742 * 10 9 8 33 33 H 1.09001 * 109.47601 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.46922 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47140 * 59.99976 * 11 10 9 36 36 H 1.09001 * 109.46992 * 305.00257 * 14 12 6 37 37 H 1.08998 * 109.47097 * 64.99445 * 14 12 6 38 38 H 0.96996 * 119.99975 * 180.02562 * 18 17 15 39 39 H 1.08001 * 126.12643 * 180.21893 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5844 -0.6706 0.0000 6 6 4.7745 -1.5249 0.0005 7 1 5.6127 -0.9799 0.4348 8 6 4.4997 -2.7819 0.8284 9 6 5.7429 -3.6737 0.8294 10 6 6.0847 -4.0738 -0.6073 11 6 6.3595 -2.8168 -1.4351 12 6 5.1157 -1.9248 -1.4363 13 1 4.2776 -2.4698 -1.8705 14 6 5.3906 -0.6679 -2.2641 15 6 5.6058 -1.0525 -3.7051 16 1 5.5524 -2.0899 -4.0010 17 6 5.8709 -0.0801 -4.6461 18 7 5.9365 1.1830 -4.2858 19 14 6.1384 -0.5571 -6.4322 20 1 4.8374 -0.5440 -7.1481 21 1 7.0642 0.4130 -7.0702 22 1 6.7262 -1.9192 -6.4982 23 6 2.3031 -1.0942 0.0001 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.9951 2.1578 -0.0004 28 1 3.6615 -3.3268 0.3941 29 1 4.2566 -2.4969 1.8520 30 1 5.5470 -4.5694 1.4187 31 1 6.5808 -3.1285 1.2638 32 1 5.2468 -4.6190 -1.0418 33 1 6.9701 -4.7095 -0.6066 34 1 6.6026 -3.1018 -2.4587 35 1 7.1975 -2.2716 -1.0006 36 1 4.5386 0.0082 -2.1918 37 1 6.2826 -0.1701 -1.8837 38 1 6.1226 1.8671 -4.9477 39 1 1.9723 -2.1223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260958268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:58 Heat of formation + Delta-G solvation = 26.485281 kcal Electronic energy + Delta-G solvation = -18637.845441 eV Core-core repulsion = 15966.002582 eV Total energy + Delta-G solvation = -2671.842859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.19920 -39.55634 -35.38723 -34.18377 -32.97139 -32.46390 -30.17245 -28.63390 -27.01846 -25.20899 -23.82033 -22.10613 -21.60758 -21.26968 -20.21141 -18.51122 -17.73639 -16.60892 -16.10046 -15.72117 -15.32723 -15.17841 -14.91344 -14.31745 -14.17131 -14.01933 -13.74624 -13.57771 -13.44703 -13.32291 -12.93384 -12.69800 -12.61205 -12.51954 -12.18834 -12.01249 -11.74885 -11.52645 -11.37142 -11.30417 -11.02986 -10.84098 -10.56152 -10.16793 -9.06968 -8.19325 -6.30958 1.13790 1.34337 1.36320 1.47049 1.75012 1.99585 2.37461 3.12751 3.54915 3.79746 3.91810 4.02003 4.08594 4.24770 4.27334 4.37328 4.52188 4.53382 4.58331 4.66062 4.72690 4.91477 4.99476 5.04106 5.08957 5.11881 5.17842 5.23867 5.30580 5.39238 5.41678 5.44348 5.46762 5.58450 5.72394 5.85958 5.93188 6.22911 6.35289 6.86790 6.94773 7.37369 8.92146 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.008420 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.194395 B = 3324.769351 C = 4583.995633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.260 4.260 3 C 0.022 3.978 4 N -0.338 5.338 5 N -0.358 5.358 6 C 0.163 3.837 7 H 0.072 0.928 8 C -0.114 4.114 9 C -0.107 4.107 10 C -0.115 4.115 11 C -0.100 4.100 12 C -0.078 4.078 13 H 0.057 0.943 14 C 0.043 3.957 15 C -0.532 4.532 16 H 0.062 0.938 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.962 3.038 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.258 1.258 23 C 0.047 3.953 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.191 0.809 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.046 0.954 36 H -0.010 1.010 37 H -0.028 1.028 38 H 0.260 0.740 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 -10.768 11.296 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.271 4.271 3 C -0.163 4.163 4 N -0.159 5.159 5 N -0.139 5.139 6 C 0.062 3.938 7 H 0.090 0.910 8 C -0.152 4.152 9 C -0.145 4.145 10 C -0.152 4.152 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.075 0.925 14 C 0.005 3.995 15 C -0.570 4.570 16 H 0.081 0.919 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.787 3.213 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.182 1.182 23 C -0.099 4.099 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.008 0.992 37 H -0.009 1.009 38 H 0.069 0.931 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.717 -10.317 11.246 16.297 hybrid contribution -0.351 0.636 -1.316 1.503 sum -6.068 -9.681 9.931 15.138 Atomic orbital electron populations 1.20030 0.87081 1.02600 1.02191 1.20516 0.98599 0.91138 1.16892 1.24164 0.90094 1.01078 1.00954 1.77367 1.22826 0.90975 1.24764 1.48832 1.06241 1.03750 1.55116 1.21563 0.84442 0.90366 0.97465 0.90971 1.21889 1.00732 0.93276 0.99338 1.21491 0.96276 0.99747 0.96954 1.21603 1.02441 0.96152 0.95053 1.21449 0.95814 0.96039 1.00522 1.21442 0.98525 0.97099 0.92691 0.92468 1.18881 0.93931 0.92746 0.93896 1.21646 1.47619 0.93469 0.94258 0.91938 1.26022 0.95334 0.94854 1.03951 1.70166 1.50559 1.01145 1.35544 0.85493 0.78119 0.78540 0.79188 1.20053 1.20938 1.18205 1.22759 0.83868 1.01269 1.02022 0.90901 0.91820 0.91312 0.79184 0.89707 0.90298 0.88220 0.91841 0.91244 0.90180 0.92584 0.93482 0.99203 1.00921 0.93142 0.78530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.34 10.37 71.24 0.74 -0.61 16 2 C -0.26 -8.16 6.10 -20.15 -0.12 -8.28 16 3 C 0.02 0.82 11.96 85.23 1.02 1.84 16 4 N -0.34 -15.00 11.76 -57.02 -0.67 -15.67 16 5 N -0.36 -13.77 2.87 -327.49 -0.94 -14.71 16 6 C 0.16 5.77 2.64 44.99 0.12 5.89 16 7 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 8 C -0.11 -2.69 4.84 30.59 0.15 -2.54 16 9 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 10 C -0.12 -2.75 5.92 30.59 0.18 -2.56 16 11 C -0.10 -3.53 5.02 30.61 0.15 -3.38 16 12 C -0.08 -3.22 1.85 -10.78 -0.02 -3.24 16 13 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.04 2.38 4.36 29.84 0.13 2.51 16 15 C -0.53 -31.23 8.41 25.60 0.22 -31.01 16 16 H 0.06 3.47 7.06 -2.91 -0.02 3.45 16 17 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 18 N -0.93 -60.39 13.29 21.45 0.28 -60.10 16 19 Si 0.96 45.96 29.54 68.60 2.03 47.98 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.05 1.50 10.50 83.54 0.88 2.37 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.19 5.90 8.06 -2.91 -0.02 5.87 16 28 H 0.08 1.75 7.16 -2.39 -0.02 1.74 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 2.19 6.95 -2.39 -0.02 2.18 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H -0.01 -0.66 6.76 -2.39 -0.02 -0.67 16 37 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 39 H 0.20 4.58 7.26 -2.91 -0.02 4.55 16 Total: -1.00 -75.83 311.38 5.79 -70.05 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.00 Total: 13.20 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 4.08 Total: -40.75 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -1.33 Total: -90.48 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.83 5.79 -70.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.534 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds