Wall clock time and date at job start Mon Mar 30 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 7 7 C 1.46499 * 126.39624 * 0.02562 * 6 2 1 8 8 C 1.52998 * 109.47004 * 240.01843 * 7 6 2 9 9 C 1.52998 * 109.47093 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47031 * 60.00480 * 9 8 7 11 11 C 1.52998 * 109.47031 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47043 * 294.99895 * 11 10 9 13 13 H 1.07992 * 120.00168 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99813 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99727 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00153 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47243 * 90.00040 * 16 14 12 18 18 H 1.48501 * 109.47049 * 210.00232 * 16 14 12 19 19 H 1.48500 * 109.47145 * 329.99753 * 16 14 12 20 20 C 1.52998 * 109.46791 * 299.99705 * 10 9 8 21 21 C 1.52998 * 109.47093 * 60.00333 * 20 10 9 22 22 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 23 23 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 24 24 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 25 25 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 26 26 H 1.07997 * 126.59503 * 180.24939 * 5 4 3 27 27 H 1.09003 * 109.47013 * 0.02562 * 7 6 2 28 28 H 1.08997 * 109.47381 * 300.00467 * 8 7 6 29 29 H 1.09011 * 109.46730 * 60.00123 * 8 7 6 30 30 H 1.09003 * 109.47056 * 299.99952 * 9 8 7 31 31 H 1.09008 * 109.47292 * 180.02562 * 9 8 7 32 32 H 1.08997 * 109.46963 * 59.99722 * 10 9 8 33 33 H 1.09005 * 109.47075 * 54.99512 * 11 10 9 34 34 H 1.09001 * 109.47228 * 174.99613 * 11 10 9 35 35 H 0.97002 * 119.99410 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47587 * 300.00150 * 20 10 9 37 37 H 1.08997 * 109.46849 * 180.02562 * 20 10 9 38 38 H 1.09000 * 109.47444 * 179.97438 * 21 20 10 39 39 H 1.08997 * 109.47474 * 59.99485 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 7 2.2942 -1.0973 0.0053 7 6 1.8427 -2.4909 0.0116 8 6 2.3708 -3.1925 1.2645 9 6 1.8988 -4.6478 1.2714 10 6 2.4282 -5.3615 0.0259 11 6 1.9568 -6.8170 0.0330 12 6 2.5769 -7.5402 1.2008 13 1 3.2405 -7.0141 1.8710 14 6 2.2970 -8.8734 1.4135 15 7 2.8378 -9.5043 2.4329 16 14 1.1485 -9.7831 0.2546 17 1 1.9354 -10.3811 -0.8537 18 1 0.4447 -10.8585 0.9985 19 1 0.1524 -8.8328 -0.3021 20 6 1.9001 -4.6600 -1.2271 21 6 2.3721 -3.2047 -1.2339 22 1 -0.3633 0.0048 1.0277 23 1 -0.3634 0.8874 -0.5180 24 1 -0.3633 -0.8925 -0.5095 25 1 4.4098 1.3413 -0.0058 26 1 4.4777 -1.2829 0.0065 27 1 0.7530 -2.5199 0.0109 28 1 3.4604 -3.1634 1.2652 29 1 1.9933 -2.6842 2.1519 30 1 0.8092 -4.6763 1.2710 31 1 2.2747 -5.1475 2.1643 32 1 3.5178 -5.3329 0.0263 33 1 0.8708 -6.8467 0.1225 34 1 2.2582 -7.3012 -0.8958 35 1 2.6411 -10.4424 2.5822 36 1 0.8104 -4.6886 -1.2275 37 1 2.2769 -5.1687 -2.1143 38 1 1.9963 -2.7050 -2.1267 39 1 3.4617 -3.1760 -1.2335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260959205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:59 Heat of formation + Delta-G solvation = 28.032010 kcal Electronic energy + Delta-G solvation = -18203.927977 eV Core-core repulsion = 15532.152189 eV Total energy + Delta-G solvation = -2671.775788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.13910 -38.49523 -34.37156 -32.51647 -31.77941 -30.65782 -30.41342 -27.14780 -26.66508 -23.37534 -22.49306 -21.69497 -20.41503 -19.47559 -19.13387 -17.18783 -16.75935 -15.44050 -15.02705 -14.41978 -14.25019 -14.05728 -13.60798 -13.51981 -13.17153 -12.96282 -12.78265 -12.45329 -12.38502 -12.16176 -12.04006 -11.79625 -11.15214 -11.02307 -10.92406 -10.61291 -10.30632 -9.98535 -9.83222 -9.74695 -9.43112 -9.40073 -9.08123 -8.57966 -8.30198 -6.08688 -4.06503 2.10275 2.80627 3.17612 3.26288 3.34499 3.36766 4.40671 4.46429 4.48701 4.75012 4.76736 5.01512 5.20600 5.24192 5.27272 5.37091 5.41324 5.47499 5.53054 5.61895 5.67353 5.72030 5.77425 5.82314 5.99219 6.07626 6.21127 6.34402 6.37911 6.46820 6.72912 6.79302 6.81586 6.92413 7.19115 7.26519 7.37339 7.74932 8.14446 8.48958 8.95986 9.54129 11.04607 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.044947 B = 0.004601 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.807004 B = 6084.382959 C = 6233.553728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.197 3.803 3 N -0.499 5.499 4 C -0.037 4.037 5 C -0.050 4.050 6 N -0.444 5.444 7 C 0.131 3.869 8 C -0.124 4.124 9 C -0.102 4.102 10 C -0.075 4.075 11 C -0.010 4.010 12 C -0.517 4.517 13 H 0.073 0.927 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.114 4.114 21 C -0.122 4.122 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.166 0.834 26 H 0.170 0.830 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 15.197 -6.257 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 N -0.218 5.218 4 C -0.185 4.185 5 C -0.184 4.184 6 N -0.126 5.126 7 C 0.029 3.971 8 C -0.162 4.162 9 C -0.140 4.140 10 C -0.093 4.093 11 C -0.047 4.047 12 C -0.555 4.555 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.152 4.152 21 C -0.160 4.160 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.183 0.817 26 H 0.187 0.813 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.458 15.686 -6.161 17.203 hybrid contribution -0.044 -1.504 -0.509 1.588 sum -3.502 14.182 -6.670 16.059 Atomic orbital electron populations 1.20168 0.85370 1.03718 1.03421 1.23242 0.95624 0.81626 1.05987 1.70195 1.02309 1.28475 1.20847 1.22210 0.94691 0.92784 1.08864 1.22627 0.87552 0.96568 1.11612 1.45706 1.06359 1.07505 1.53046 1.21707 1.00387 0.77098 0.97909 1.21959 1.01544 0.97504 0.95239 1.21504 1.00383 0.91539 1.00539 1.21070 0.99883 0.96425 0.91927 1.19617 0.96469 0.91376 0.97231 1.21133 1.28522 0.95112 1.10764 0.90899 1.25034 0.95719 0.97626 0.95120 1.69916 1.44461 1.10666 1.29232 0.86811 0.81728 0.79674 0.81235 1.20374 1.21455 1.19070 1.21664 1.00792 0.92930 0.99846 1.21883 1.01620 0.96846 0.95660 0.90308 0.89429 0.90910 0.81669 0.81261 0.88246 0.91376 0.91909 0.92434 0.89710 0.91769 0.96606 0.97046 0.92762 0.92108 0.91569 0.92009 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.03 36.01 0.36 -0.29 16 2 C 0.20 2.61 7.90 -155.42 -1.23 1.39 16 3 N -0.50 -7.45 11.25 -10.81 -0.12 -7.57 16 4 C -0.04 -0.49 11.87 -17.81 -0.21 -0.70 16 5 C -0.05 -0.62 10.61 -16.56 -0.18 -0.80 16 6 N -0.44 -5.68 2.61 -106.83 -0.28 -5.96 16 7 C 0.13 1.59 2.79 -67.93 -0.19 1.40 16 8 C -0.12 -1.67 5.26 -26.73 -0.14 -1.81 16 9 C -0.10 -1.65 5.01 -26.73 -0.13 -1.79 16 10 C -0.07 -1.31 2.14 -90.62 -0.19 -1.50 16 11 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 12 C -0.52 -13.93 8.96 -34.44 -0.31 -14.23 16 13 H 0.07 2.11 7.30 -52.49 -0.38 1.72 16 14 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 15 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 16 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 20 C -0.11 -1.61 5.20 -26.73 -0.14 -1.74 16 21 C -0.12 -1.48 5.26 -26.73 -0.14 -1.62 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.59 7.08 -51.93 -0.37 0.23 16 25 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.10 1.11 6.67 -51.93 -0.35 0.76 16 28 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 29 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.60 6.95 -51.92 -0.36 1.24 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 34 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -30.87 308.29 -8.79 -39.66 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.45 Total: -0.54 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -2.70 Total: -20.26 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.37 Total: -39.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.87 -8.79 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.694 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds