Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 7 7 C 1.46499 * 126.39624 * 0.02562 * 6 2 1 8 8 C 1.52998 * 109.47004 * 240.01843 * 7 6 2 9 9 C 1.52998 * 109.47093 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47031 * 60.00480 * 9 8 7 11 11 C 1.52998 * 109.47031 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47043 * 294.99895 * 11 10 9 13 13 H 1.07992 * 120.00168 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99813 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99727 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00153 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47243 * 90.00040 * 16 14 12 18 18 H 1.48501 * 109.47049 * 210.00232 * 16 14 12 19 19 H 1.48500 * 109.47145 * 329.99753 * 16 14 12 20 20 C 1.52998 * 109.46791 * 299.99705 * 10 9 8 21 21 C 1.52998 * 109.47093 * 60.00333 * 20 10 9 22 22 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 23 23 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 24 24 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 25 25 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 26 26 H 1.07997 * 126.59503 * 180.24939 * 5 4 3 27 27 H 1.09003 * 109.47013 * 0.02562 * 7 6 2 28 28 H 1.08997 * 109.47381 * 300.00467 * 8 7 6 29 29 H 1.09011 * 109.46730 * 60.00123 * 8 7 6 30 30 H 1.09003 * 109.47056 * 299.99952 * 9 8 7 31 31 H 1.09008 * 109.47292 * 180.02562 * 9 8 7 32 32 H 1.08997 * 109.46963 * 59.99722 * 10 9 8 33 33 H 1.09005 * 109.47075 * 54.99512 * 11 10 9 34 34 H 1.09001 * 109.47228 * 174.99613 * 11 10 9 35 35 H 0.97002 * 119.99410 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47587 * 300.00150 * 20 10 9 37 37 H 1.08997 * 109.46849 * 180.02562 * 20 10 9 38 38 H 1.09000 * 109.47444 * 179.97438 * 21 20 10 39 39 H 1.08997 * 109.47474 * 59.99485 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 7 2.2942 -1.0973 0.0053 7 6 1.8427 -2.4909 0.0116 8 6 2.3708 -3.1925 1.2645 9 6 1.8988 -4.6478 1.2714 10 6 2.4282 -5.3615 0.0259 11 6 1.9568 -6.8170 0.0330 12 6 2.5769 -7.5402 1.2008 13 1 3.2405 -7.0141 1.8710 14 6 2.2970 -8.8734 1.4135 15 7 2.8378 -9.5043 2.4329 16 14 1.1485 -9.7831 0.2546 17 1 1.9354 -10.3811 -0.8537 18 1 0.4447 -10.8585 0.9985 19 1 0.1524 -8.8328 -0.3021 20 6 1.9001 -4.6600 -1.2271 21 6 2.3721 -3.2047 -1.2339 22 1 -0.3633 0.0048 1.0277 23 1 -0.3634 0.8874 -0.5180 24 1 -0.3633 -0.8925 -0.5095 25 1 4.4098 1.3413 -0.0058 26 1 4.4777 -1.2829 0.0065 27 1 0.7530 -2.5199 0.0109 28 1 3.4604 -3.1634 1.2652 29 1 1.9933 -2.6842 2.1519 30 1 0.8092 -4.6763 1.2710 31 1 2.2747 -5.1475 2.1643 32 1 3.5178 -5.3329 0.0263 33 1 0.8708 -6.8467 0.1225 34 1 2.2582 -7.3012 -0.8958 35 1 2.6411 -10.4424 2.5822 36 1 0.8104 -4.6886 -1.2275 37 1 2.2769 -5.1687 -2.1143 38 1 1.9963 -2.7050 -2.1267 39 1 3.4617 -3.1760 -1.2335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260959205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = 11.621316 kcal Electronic energy + Delta-G solvation = -18204.639598 eV Core-core repulsion = 15532.152189 eV Total energy + Delta-G solvation = -2672.487409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.09924 -39.69841 -35.81055 -34.31074 -32.61299 -31.90213 -31.77213 -28.58564 -27.66730 -24.87205 -23.65562 -22.88918 -21.71359 -20.52614 -20.33487 -18.84655 -18.12340 -16.42579 -16.34969 -16.11749 -15.30202 -15.23668 -14.89581 -14.61917 -14.57760 -14.05525 -14.01164 -13.67093 -13.48941 -13.30262 -13.19492 -13.05331 -12.78783 -12.43931 -12.11968 -12.05041 -11.73737 -11.66194 -11.22229 -11.14117 -10.95076 -10.80329 -10.71536 -10.38363 -9.24825 -8.25147 -6.27432 1.14984 1.37418 1.38963 1.50180 1.85299 2.19992 2.38610 3.10887 3.50225 3.64474 3.70005 3.83023 4.01119 4.10665 4.21432 4.35609 4.49391 4.50460 4.51719 4.56276 4.59524 4.73432 4.83704 4.91735 4.95921 5.01980 5.08465 5.14809 5.17042 5.21961 5.29480 5.39111 5.50075 5.58630 5.74429 5.76136 5.87645 6.33128 6.34949 6.81053 7.18274 7.36723 8.91586 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.044947 B = 0.004601 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.807004 B = 6084.382959 C = 6233.553728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.190 3.810 3 N -0.533 5.533 4 C -0.053 4.053 5 C -0.056 4.056 6 N -0.447 5.447 7 C 0.138 3.862 8 C -0.113 4.113 9 C -0.096 4.096 10 C -0.072 4.072 11 C -0.009 4.009 12 C -0.518 4.518 13 H 0.034 0.966 14 C 0.001 3.999 15 N -0.956 5.956 16 Si 0.946 3.054 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.242 1.242 20 C -0.105 4.105 21 C -0.113 4.113 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.182 0.818 26 H 0.186 0.814 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.022 0.978 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 16.090 -8.315 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 N -0.253 5.253 4 C -0.200 4.200 5 C -0.189 4.189 6 N -0.129 5.129 7 C 0.036 3.964 8 C -0.152 4.152 9 C -0.134 4.134 10 C -0.090 4.090 11 C -0.046 4.046 12 C -0.556 4.556 13 H 0.052 0.948 14 C -0.195 4.195 15 N -0.597 5.597 16 Si 0.770 3.230 17 H -0.196 1.196 18 H -0.216 1.216 19 H -0.166 1.166 20 C -0.143 4.143 21 C -0.151 4.151 22 H 0.106 0.894 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.199 0.801 26 H 0.203 0.797 27 H 0.136 0.864 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.136 16.607 -8.232 19.234 hybrid contribution 0.565 -1.738 0.217 1.840 sum -4.572 14.869 -8.015 17.499 Atomic orbital electron populations 1.20333 0.83066 1.04952 1.04407 1.23913 0.97020 0.81310 1.04941 1.70199 1.03240 1.29659 1.22242 1.22604 0.94895 0.93581 1.08946 1.22944 0.88128 0.96677 1.11191 1.45738 1.06425 1.07530 1.53182 1.21645 1.01316 0.76680 0.96785 1.21787 1.01215 0.95625 0.96532 1.21358 1.00745 0.93001 0.98316 1.20974 0.99077 0.94363 0.94620 1.19603 0.96308 0.93790 0.94937 1.21503 1.27420 0.95276 1.11450 0.94789 1.26007 0.97757 0.98848 0.96925 1.70083 1.46804 1.11110 1.31725 0.85714 0.79871 0.78467 0.78917 1.19565 1.21554 1.16572 1.21544 1.01521 0.93652 0.97607 1.21787 1.01541 0.95528 0.96270 0.89366 0.88789 0.89107 0.80080 0.79723 0.86440 0.91929 0.91597 0.91462 0.93544 0.93344 0.96001 0.96626 0.92798 0.90695 0.91012 0.90356 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.03 71.24 0.71 -0.41 16 2 C 0.19 4.61 7.90 138.13 1.09 5.70 16 3 N -0.53 -15.16 11.25 -188.13 -2.12 -17.27 16 4 C -0.05 -1.33 11.87 83.52 0.99 -0.34 16 5 C -0.06 -1.30 10.61 83.09 0.88 -0.42 16 6 N -0.45 -10.32 2.61 -491.90 -1.28 -11.60 16 7 C 0.14 2.92 2.79 44.99 0.13 3.05 16 8 C -0.11 -2.88 5.26 30.59 0.16 -2.72 16 9 C -0.10 -3.06 5.01 30.59 0.15 -2.91 16 10 C -0.07 -2.44 2.14 -10.79 -0.02 -2.46 16 11 C -0.01 -0.39 3.52 29.85 0.10 -0.28 16 12 C -0.52 -28.52 8.96 25.60 0.23 -28.29 16 13 H 0.03 2.07 7.30 -2.91 -0.02 2.05 16 14 C 0.00 0.03 5.47 84.65 0.46 0.50 16 15 N -0.96 -59.32 13.96 21.45 0.30 -59.03 16 16 Si 0.95 43.08 27.47 68.60 1.88 44.96 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 19 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 20 C -0.11 -2.62 5.20 30.59 0.16 -2.46 16 21 C -0.11 -2.37 5.26 30.59 0.16 -2.21 16 22 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.13 7.08 -2.38 -0.02 1.11 16 25 H 0.18 3.64 8.06 -2.91 -0.02 3.61 16 26 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.12 2.12 6.67 -2.39 -0.02 2.11 16 28 H 0.06 1.65 7.95 -2.39 -0.02 1.64 16 29 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.82 6.95 -2.38 -0.02 1.80 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 34 H 0.02 0.66 7.57 -2.39 -0.02 0.64 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.46 7.95 -2.39 -0.02 1.44 16 Total: -1.00 -67.94 308.29 4.95 -62.99 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.95 Total: 13.19 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 5.21 Total: -33.25 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -3.10 Total: -87.90 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Total: -67.94 4.95 -62.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.613 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds