Wall clock time and date at job start Mon Mar 30 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34858 * 126.65192 * 2 1 4 4 C 1.50697 * 125.96317 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46839 * 120.05064 * 4 3 2 6 6 C 1.52999 * 109.47160 * 240.04868 * 4 3 2 7 7 N 1.34286 * 108.07182 * 180.02562 * 3 2 1 8 8 C 1.30098 * 109.21423 * 0.03865 * 7 3 2 9 9 N 1.35420 * 108.62203 * 359.91739 * 8 7 3 10 10 C 1.46478 * 124.82134 * 180.14060 * 9 8 7 11 11 C 1.53258 * 108.79510 * 17.11147 * 10 9 8 12 12 C 1.53148 * 109.54325 * 309.64389 * 11 10 9 13 13 H 1.09004 * 109.47102 * 309.50792 * 12 11 10 14 14 C 1.50704 * 109.55574 * 189.36873 * 12 11 10 15 15 H 1.07998 * 119.99847 * 0.20993 * 14 12 11 16 16 C 1.37874 * 119.99938 * 180.20927 * 14 12 11 17 17 N 1.31516 * 120.00020 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99972 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46915 * 60.00121 * 18 16 14 20 20 H 1.48499 * 109.47289 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47225 * 300.00705 * 18 16 14 22 22 C 1.51039 * 127.39331 * 179.97438 * 8 7 3 23 23 H 1.08993 * 109.47407 * 90.02544 * 1 2 3 24 24 H 1.09003 * 109.46299 * 210.02478 * 1 2 3 25 25 H 1.09000 * 109.46885 * 330.01756 * 1 2 3 26 26 H 1.08997 * 109.47243 * 0.05549 * 4 3 2 27 27 H 1.09003 * 109.46768 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47192 * 299.99573 * 5 4 3 29 29 H 1.09004 * 109.47168 * 60.00072 * 5 4 3 30 30 H 1.09003 * 109.47065 * 60.00488 * 6 4 3 31 31 H 1.09003 * 109.47437 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.47598 * 300.00463 * 6 4 3 33 33 H 1.09007 * 109.58177 * 136.90471 * 10 9 8 34 34 H 1.09003 * 109.58333 * 257.17578 * 10 9 8 35 35 H 1.08997 * 109.47264 * 69.63028 * 11 10 9 36 36 H 1.08996 * 109.46863 * 189.62554 * 11 10 9 37 37 H 0.97004 * 119.99595 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.71592 * 315.61272 * 22 8 7 39 39 H 1.09001 * 109.71479 * 76.21174 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3121 1.0819 0.0000 4 6 1.8618 2.5201 -0.0005 5 6 2.3984 3.2229 1.2481 6 6 2.3971 3.2216 -1.2504 7 7 3.5849 0.6541 -0.0006 8 6 3.5993 -0.6468 -0.0018 9 7 2.3209 -1.0934 -0.0001 10 6 1.9278 -2.5045 0.0022 11 6 3.1315 -3.3516 0.4294 12 6 4.3551 -2.9603 -0.4043 13 1 4.0927 -2.9717 -1.4622 14 6 5.4721 -3.9398 -0.1513 15 1 5.3244 -4.7623 0.5328 16 6 6.6825 -3.7859 -0.7933 17 7 6.8625 -2.7840 -1.6260 18 14 8.0673 -4.9997 -0.4791 19 1 7.6269 -6.3641 -0.8661 20 1 9.2546 -4.6153 -1.2841 21 1 8.4214 -4.9843 0.9630 22 6 4.8094 -1.5507 -0.0033 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3632 -0.8898 0.5143 25 1 -0.3633 0.8901 0.5136 26 1 0.7725 2.5598 0.0000 27 1 2.0730 4.2632 1.2475 28 1 2.0169 2.7231 2.1385 29 1 3.4877 3.1832 1.2476 30 1 2.0148 2.7209 -2.1399 31 1 2.0718 4.2620 -1.2506 32 1 3.4864 3.1819 -1.2510 33 1 1.1079 -2.6542 0.7047 34 1 1.6094 -2.7967 -0.9985 35 1 3.3415 -3.1784 1.4848 36 1 2.9073 -4.4066 0.2720 37 1 7.7143 -2.6756 -2.0773 38 1 5.5424 -1.1827 -0.7212 39 1 5.2509 -1.5758 0.9930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260999442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:03 Heat of formation + Delta-G solvation = 25.188410 kcal Electronic energy + Delta-G solvation = -18548.679968 eV Core-core repulsion = 15876.780873 eV Total energy + Delta-G solvation = -2671.899096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69284 -36.53880 -34.61716 -33.28599 -32.00773 -29.93809 -28.41850 -26.81513 -26.47723 -24.56435 -23.07423 -21.41312 -20.47050 -18.73347 -18.05900 -16.35344 -15.71389 -15.34953 -14.67786 -14.56623 -13.86781 -13.52739 -13.08575 -13.02448 -12.74440 -12.60355 -12.53686 -12.44955 -12.07516 -11.85397 -11.43627 -11.09636 -10.97748 -10.94617 -10.77337 -10.59502 -10.53406 -10.37373 -9.93695 -9.46479 -9.08211 -9.03889 -8.74942 -8.48017 -7.31576 -6.08660 -4.16685 2.67424 3.28246 3.34295 3.35492 3.46781 3.81469 4.36526 5.00348 5.10363 5.21794 5.26401 5.30310 5.37674 5.43926 5.52666 5.60778 5.68205 5.72784 5.90512 5.92187 5.96624 6.03914 6.19434 6.20381 6.30028 6.39764 6.43046 6.57269 6.69163 6.70117 6.87471 7.03617 7.20504 7.47470 7.60004 7.67234 7.89130 8.05351 8.25890 8.85082 8.93964 9.49661 10.98217 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031633 B = 0.005976 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.946176 B = 4684.036979 C = 5266.199926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.054 4.054 3 C 0.000 4.000 4 C -0.004 4.004 5 C -0.137 4.137 6 C -0.137 4.137 7 N -0.498 5.498 8 C 0.240 3.760 9 N -0.452 5.452 10 C 0.106 3.894 11 C -0.125 4.125 12 C 0.048 3.952 13 H 0.031 0.969 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.027 4.027 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.264 0.736 38 H 0.113 0.887 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 5.871 2.942 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.169 4.169 3 C -0.129 4.129 4 C -0.024 4.024 5 C -0.195 4.195 6 C -0.195 4.195 7 N -0.216 5.216 8 C -0.023 4.023 9 N -0.135 5.135 10 C -0.017 4.017 11 C -0.163 4.163 12 C 0.029 3.971 13 H 0.049 0.951 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.066 4.066 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.817 6.299 2.818 12.831 hybrid contribution 0.012 -1.239 0.095 1.242 sum -10.805 5.061 2.912 12.282 Atomic orbital electron populations 1.20065 0.88331 1.02267 1.01785 1.20639 0.93758 0.87146 1.15325 1.20308 0.89313 0.94105 1.09185 1.19310 0.98603 0.88799 0.95651 1.21742 1.02195 0.98640 0.96901 1.21736 1.02238 0.98600 0.96906 1.69949 1.21031 1.08730 1.21919 1.24389 0.86565 0.90398 1.00947 1.45308 1.07136 1.06318 1.54749 1.22003 0.99405 0.78450 1.01803 1.22031 0.94713 0.98474 1.01089 1.18769 0.91447 0.91902 0.94970 0.95082 1.20999 0.97076 1.11200 1.26676 0.92300 1.24997 0.98612 0.95470 0.94691 1.69875 1.24999 1.29559 1.27850 0.86615 0.81435 0.81350 0.78357 1.20269 1.21208 1.20171 1.20622 0.90256 0.92858 1.02867 0.91810 0.92420 0.90809 0.91145 0.93235 0.93313 0.91918 0.93219 0.93247 0.91878 0.91014 0.90797 0.92192 0.90616 0.92571 0.86882 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 9.85 36.01 0.35 -0.49 16 2 C -0.05 -0.96 6.98 -81.80 -0.57 -1.53 16 3 C 0.00 0.01 5.61 -82.72 -0.46 -0.45 16 4 C 0.00 -0.06 3.28 -91.77 -0.30 -0.36 16 5 C -0.14 -1.89 9.18 37.16 0.34 -1.55 16 6 C -0.14 -1.95 9.18 37.16 0.34 -1.61 16 7 N -0.50 -11.09 11.24 -6.88 -0.08 -11.17 16 8 C 0.24 5.40 7.65 -155.24 -1.19 4.21 16 9 N -0.45 -8.84 3.13 -109.18 -0.34 -9.18 16 10 C 0.11 1.78 6.72 -3.92 -0.03 1.76 16 11 C -0.13 -2.40 5.18 -26.52 -0.14 -2.54 16 12 C 0.05 1.15 2.12 -91.47 -0.19 0.95 16 13 H 0.03 0.81 8.12 -51.93 -0.42 0.39 16 14 C -0.52 -13.56 8.53 -34.44 -0.29 -13.85 16 15 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 16 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -24.70 11.49 55.43 0.64 -24.07 16 18 Si 0.89 20.61 29.54 -169.99 -5.02 15.58 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 C -0.03 -0.65 5.20 -27.50 -0.14 -0.79 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 25 H 0.07 0.81 7.18 -51.93 -0.37 0.43 16 26 H 0.07 0.89 6.82 -51.93 -0.35 0.54 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.00 7.80 -51.93 -0.41 0.60 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 36 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.11 3.06 6.50 -51.93 -0.34 2.72 16 39 H 0.07 1.64 8.11 -51.93 -0.42 1.22 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -29.11 311.16 -8.97 -38.08 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.48 Total: 0.68 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.38 Total: -14.62 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.22 Total: -44.41 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.11 -8.97 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260999442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.271 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds