Wall clock time and date at job start Mon Mar 30 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34858 * 126.65192 * 2 1 4 4 C 1.50697 * 125.96317 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46839 * 120.05064 * 4 3 2 6 6 C 1.52999 * 109.47160 * 240.04868 * 4 3 2 7 7 N 1.34286 * 108.07182 * 180.02562 * 3 2 1 8 8 C 1.30098 * 109.21423 * 0.03865 * 7 3 2 9 9 N 1.35420 * 108.62203 * 359.91739 * 8 7 3 10 10 C 1.46478 * 124.82134 * 180.14060 * 9 8 7 11 11 C 1.53258 * 108.79510 * 17.11147 * 10 9 8 12 12 C 1.53148 * 109.54325 * 309.64389 * 11 10 9 13 13 H 1.09004 * 109.47102 * 309.50792 * 12 11 10 14 14 C 1.50704 * 109.55574 * 189.36873 * 12 11 10 15 15 H 1.07998 * 119.99847 * 0.20993 * 14 12 11 16 16 C 1.37874 * 119.99938 * 180.20927 * 14 12 11 17 17 N 1.31516 * 120.00020 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99972 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46915 * 60.00121 * 18 16 14 20 20 H 1.48499 * 109.47289 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47225 * 300.00705 * 18 16 14 22 22 C 1.51039 * 127.39331 * 179.97438 * 8 7 3 23 23 H 1.08993 * 109.47407 * 90.02544 * 1 2 3 24 24 H 1.09003 * 109.46299 * 210.02478 * 1 2 3 25 25 H 1.09000 * 109.46885 * 330.01756 * 1 2 3 26 26 H 1.08997 * 109.47243 * 0.05549 * 4 3 2 27 27 H 1.09003 * 109.46768 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47192 * 299.99573 * 5 4 3 29 29 H 1.09004 * 109.47168 * 60.00072 * 5 4 3 30 30 H 1.09003 * 109.47065 * 60.00488 * 6 4 3 31 31 H 1.09003 * 109.47437 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.47598 * 300.00463 * 6 4 3 33 33 H 1.09007 * 109.58177 * 136.90471 * 10 9 8 34 34 H 1.09003 * 109.58333 * 257.17578 * 10 9 8 35 35 H 1.08997 * 109.47264 * 69.63028 * 11 10 9 36 36 H 1.08996 * 109.46863 * 189.62554 * 11 10 9 37 37 H 0.97004 * 119.99595 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.71592 * 315.61272 * 22 8 7 39 39 H 1.09001 * 109.71479 * 76.21174 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3121 1.0819 0.0000 4 6 1.8618 2.5201 -0.0005 5 6 2.3984 3.2229 1.2481 6 6 2.3971 3.2216 -1.2504 7 7 3.5849 0.6541 -0.0006 8 6 3.5993 -0.6468 -0.0018 9 7 2.3209 -1.0934 -0.0001 10 6 1.9278 -2.5045 0.0022 11 6 3.1315 -3.3516 0.4294 12 6 4.3551 -2.9603 -0.4043 13 1 4.0927 -2.9717 -1.4622 14 6 5.4721 -3.9398 -0.1513 15 1 5.3244 -4.7623 0.5328 16 6 6.6825 -3.7859 -0.7933 17 7 6.8625 -2.7840 -1.6260 18 14 8.0673 -4.9997 -0.4791 19 1 7.6269 -6.3641 -0.8661 20 1 9.2546 -4.6153 -1.2841 21 1 8.4214 -4.9843 0.9630 22 6 4.8094 -1.5507 -0.0033 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3632 -0.8898 0.5143 25 1 -0.3633 0.8901 0.5136 26 1 0.7725 2.5598 0.0000 27 1 2.0730 4.2632 1.2475 28 1 2.0169 2.7231 2.1385 29 1 3.4877 3.1832 1.2476 30 1 2.0148 2.7209 -2.1399 31 1 2.0718 4.2620 -1.2506 32 1 3.4864 3.1819 -1.2510 33 1 1.1079 -2.6542 0.7047 34 1 1.6094 -2.7967 -0.9985 35 1 3.3415 -3.1784 1.4848 36 1 2.9073 -4.4066 0.2720 37 1 7.7143 -2.6756 -2.0773 38 1 5.5424 -1.1827 -0.7212 39 1 5.2509 -1.5758 0.9930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260999442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:03 Heat of formation + Delta-G solvation = 9.905486 kcal Electronic energy + Delta-G solvation = -18549.342686 eV Core-core repulsion = 15876.780873 eV Total energy + Delta-G solvation = -2672.561813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.19163 -38.10283 -36.04433 -34.85818 -33.72621 -31.39021 -30.01113 -28.13526 -27.91891 -26.17434 -24.63336 -22.88172 -22.06894 -20.13296 -19.65493 -18.33942 -17.18406 -16.86618 -16.40858 -15.93929 -15.13999 -14.95121 -14.85074 -14.56165 -14.04101 -14.01523 -13.87178 -13.68184 -13.28973 -13.08876 -13.00193 -12.80871 -12.64511 -12.38138 -12.35516 -12.12081 -11.91631 -11.72614 -11.66093 -11.24644 -11.00298 -10.60155 -10.54818 -10.25272 -8.78158 -8.12858 -6.28442 1.21673 1.43414 1.44920 1.52496 2.04278 2.25219 2.42233 3.14377 3.67124 3.77980 3.95214 4.01595 4.13871 4.20738 4.29349 4.40997 4.43219 4.61060 4.70401 4.73284 4.80930 4.84936 4.87432 4.93814 5.04751 5.05214 5.06675 5.12170 5.18314 5.32053 5.44992 5.54576 5.55322 5.67823 5.75537 5.91351 6.09302 6.23684 6.47061 6.82753 7.39316 7.42035 8.92645 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031633 B = 0.005976 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.946176 B = 4684.036979 C = 5266.199926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.042 4.042 3 C -0.026 4.026 4 C -0.005 4.005 5 C -0.132 4.132 6 C -0.133 4.133 7 N -0.526 5.526 8 C 0.196 3.804 9 N -0.452 5.452 10 C 0.106 3.894 11 C -0.117 4.117 12 C 0.048 3.952 13 H -0.002 1.002 14 C -0.535 4.535 15 H 0.065 0.935 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.958 3.042 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.270 1.270 22 C -0.011 4.011 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.262 0.738 38 H 0.072 0.928 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 5.798 3.806 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.157 4.157 3 C -0.155 4.155 4 C -0.024 4.024 5 C -0.190 4.190 6 C -0.191 4.191 7 N -0.245 5.245 8 C -0.066 4.066 9 N -0.134 5.134 10 C -0.015 4.015 11 C -0.154 4.154 12 C 0.028 3.972 13 H 0.016 0.984 14 C -0.573 4.573 15 H 0.083 0.917 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.784 3.216 19 H -0.192 1.192 20 H -0.214 1.214 21 H -0.196 1.196 22 C -0.050 4.050 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.831 6.205 3.690 15.602 hybrid contribution 0.894 -1.157 -0.187 1.474 sum -12.937 5.049 3.503 14.322 Atomic orbital electron populations 1.20283 0.84093 1.04437 1.03443 1.21560 0.96094 0.85907 1.12147 1.21065 0.88149 0.96592 1.09691 1.19510 1.00429 0.86477 0.95972 1.21696 1.00244 1.00496 0.96525 1.21700 1.00202 1.00551 0.96620 1.69851 1.23799 1.08987 1.21892 1.23828 0.87316 0.90597 1.04907 1.45475 1.06316 1.07817 1.53840 1.22170 0.99170 0.76590 1.03596 1.21872 0.93653 1.00006 0.99890 1.18681 0.93227 0.91371 0.93880 0.98378 1.21432 0.97890 1.11629 1.26307 0.91656 1.25825 1.01170 0.97059 0.94570 1.70051 1.25334 1.31323 1.29030 0.85607 0.78328 0.79443 0.78271 1.19158 1.21439 1.19551 1.20136 0.90651 0.93817 1.00414 0.90216 0.90547 0.88401 0.87808 0.90127 0.93330 0.94869 0.93750 0.90019 0.94957 0.86741 0.89706 0.92343 0.88868 0.92938 0.91003 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 9.85 71.24 0.70 -0.63 16 2 C -0.04 -1.39 6.98 41.09 0.29 -1.10 16 3 C -0.03 -0.95 5.61 41.41 0.23 -0.72 16 4 C 0.00 -0.13 3.28 -11.54 -0.04 -0.17 16 5 C -0.13 -3.42 9.18 71.98 0.66 -2.76 16 6 C -0.13 -3.60 9.18 71.98 0.66 -2.94 16 7 N -0.53 -24.22 11.24 -175.69 -1.98 -26.20 16 8 C 0.20 9.13 7.65 138.23 1.06 10.19 16 9 N -0.45 -17.17 3.13 -499.35 -1.57 -18.74 16 10 C 0.11 3.31 6.72 86.47 0.58 3.89 16 11 C -0.12 -4.37 5.18 30.73 0.16 -4.21 16 12 C 0.05 2.35 2.12 -11.35 -0.02 2.32 16 13 H 0.00 -0.11 8.12 -2.38 -0.02 -0.13 16 14 C -0.53 -28.49 8.53 25.60 0.22 -28.27 16 15 H 0.07 3.31 7.75 -2.91 -0.02 3.29 16 16 C 0.01 0.72 5.30 84.65 0.45 1.17 16 17 N -0.92 -53.87 11.49 21.45 0.25 -53.63 16 18 Si 0.96 43.05 29.54 68.60 2.03 45.07 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.01 -0.54 5.20 30.10 0.16 -0.39 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.32 7.71 -2.39 -0.02 1.30 16 25 H 0.10 1.58 7.18 -2.39 -0.02 1.56 16 26 H 0.10 2.15 6.82 -2.39 -0.02 2.14 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 2.66 7.80 -2.38 -0.02 2.64 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 36 H 0.09 3.14 8.12 -2.39 -0.02 3.12 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.07 4.24 6.50 -2.39 -0.02 4.22 16 39 H 0.05 2.58 8.11 -2.39 -0.02 2.56 16 Total: -1.00 -67.65 311.16 4.84 -62.81 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.01 Total: 14.28 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 5.10 Total: -23.60 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -3.29 Total: -98.56 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -67.65 4.84 -62.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260999442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.718 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds