Wall clock time and date at job start Mon Mar 30 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.53002 * 109.46970 * 240.00460 * 2 1 3 5 5 C 1.50698 * 109.47444 * 120.00303 * 2 1 3 6 6 N 1.30785 * 125.72253 * 234.11427 * 5 2 1 7 7 C 1.34428 * 109.32196 * 179.91104 * 6 5 2 8 8 C 1.33859 * 107.79709 * 0.02562 * 7 6 5 9 9 N 1.34406 * 125.72196 * 54.08470 * 5 2 1 10 10 C 1.46473 * 128.44919 * 0.19706 * 9 5 2 11 11 C 1.53288 * 108.69660 * 162.70554 * 10 9 5 12 12 H 1.08997 * 109.42999 * 290.73677 * 11 10 9 13 13 C 1.50699 * 109.42888 * 170.82948 * 11 10 9 14 14 H 1.07993 * 120.00412 * 359.73016 * 13 11 10 15 15 C 1.37880 * 119.99478 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00338 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99785 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47019 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46727 * 120.00053 * 17 15 13 20 20 H 1.48498 * 109.47126 * 240.00246 * 17 15 13 21 21 C 1.53121 * 109.70335 * 50.76249 * 11 10 9 22 22 C 1.50713 * 128.68212 * 180.16378 * 8 7 6 23 23 H 1.08993 * 109.47309 * 299.99340 * 1 2 3 24 24 H 1.08998 * 109.47243 * 59.99945 * 1 2 3 25 25 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47077 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47104 * 300.00140 * 3 2 1 28 28 H 1.09002 * 109.46314 * 60.00093 * 3 2 1 29 29 H 1.08999 * 109.47389 * 305.41156 * 4 2 1 30 30 H 1.08997 * 109.47465 * 65.41871 * 4 2 1 31 31 H 1.09007 * 109.47215 * 185.41800 * 4 2 1 32 32 H 1.08001 * 126.10226 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.59809 * 42.94251 * 10 9 5 34 34 H 1.08997 * 109.72568 * 282.54519 * 10 9 5 35 35 H 0.97001 * 120.00246 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.49890 * 50.02793 * 21 11 10 37 37 H 1.08999 * 109.49852 * 170.13146 * 21 11 10 38 38 H 1.09000 * 109.74039 * 283.83497 * 22 8 7 39 39 H 1.08996 * 109.73983 * 44.50298 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.8737 -0.2217 2.1043 7 6 3.0924 -1.1323 3.0687 8 6 2.3632 -2.2171 2.7800 9 7 1.6905 -1.9524 1.6140 10 6 0.7810 -2.8917 0.9537 11 6 1.0396 -4.2975 1.5072 12 1 2.0148 -4.6470 1.1681 13 6 -0.0298 -5.2362 1.0111 14 1 -0.8170 -4.8676 0.3701 15 6 -0.0062 -6.5646 1.3797 16 7 0.9493 -7.0124 2.1645 17 14 -1.3322 -7.7281 0.7653 18 1 -2.2848 -6.9824 -0.0959 19 1 -0.7060 -8.8212 -0.0210 20 1 -2.0596 -8.3057 1.9240 21 6 1.0162 -4.2621 3.0378 22 6 2.2542 -3.5102 3.5465 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.5996 -1.7170 -1.2992 30 1 1.7580 -0.1544 -2.1366 31 1 3.1257 -0.8060 -1.2022 32 1 3.7407 -1.0105 3.9238 33 1 0.9631 -2.8827 -0.1209 34 1 -0.2517 -2.6049 1.1520 35 1 0.9658 -7.9469 2.4241 36 1 0.1150 -3.7508 3.3762 37 1 1.0246 -5.2807 3.4255 38 1 3.1467 -4.1134 3.3798 39 1 2.1457 -3.2995 4.6104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:23 Heat of formation + Delta-G solvation = 18.018282 kcal Electronic energy + Delta-G solvation = -18956.121989 eV Core-core repulsion = 16283.911973 eV Total energy + Delta-G solvation = -2672.210016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.30790 -38.05039 -37.46972 -34.57464 -33.42049 -31.26459 -28.67008 -28.23245 -27.97184 -26.91209 -24.51538 -22.97202 -22.38623 -20.34668 -19.58394 -18.43812 -17.19492 -16.66264 -16.57947 -15.63497 -15.33557 -15.11766 -15.00961 -14.70677 -14.53490 -14.37118 -13.90341 -13.13925 -13.06978 -12.96756 -12.93598 -12.80906 -12.62209 -12.45487 -12.24854 -12.13347 -11.89214 -11.87827 -11.76145 -11.26739 -10.95282 -10.77220 -10.50756 -10.27595 -9.06071 -8.16502 -6.32568 1.22489 1.40854 1.43860 1.53909 2.02242 2.20426 2.41303 3.12070 3.37197 3.79204 3.92074 4.01914 4.04773 4.14460 4.24414 4.32788 4.46955 4.53817 4.62304 4.71685 4.74896 4.81141 4.85827 4.94266 4.99929 5.01547 5.07954 5.12876 5.20497 5.28969 5.36397 5.48398 5.54729 5.68710 5.74251 5.89700 5.95768 6.20670 6.45088 6.76953 7.21115 7.37035 8.88555 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028233 B = 0.006973 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.523628 B = 4014.404429 C = 4741.411028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 C -0.115 4.115 4 C -0.141 4.141 5 C 0.202 3.798 6 N -0.517 5.517 7 C -0.051 4.051 8 C -0.029 4.029 9 N -0.445 5.445 10 C 0.119 3.881 11 C 0.041 3.959 12 H -0.001 1.001 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.958 3.042 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.110 4.110 22 C -0.040 4.040 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.184 0.816 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.264 0.736 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 11.099 -3.654 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.172 4.172 4 C -0.199 4.199 5 C -0.060 4.060 6 N -0.237 5.237 7 C -0.198 4.198 8 C -0.145 4.145 9 N -0.126 5.126 10 C -0.002 4.002 11 C 0.023 3.977 12 H 0.017 0.983 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.181 4.181 16 N -0.550 5.550 17 Si 0.783 3.217 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.148 4.148 22 C -0.078 4.078 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.157 11.631 -3.689 12.203 hybrid contribution -0.694 -1.941 0.187 2.070 sum -0.851 9.690 -3.503 10.339 Atomic orbital electron populations 1.22005 0.92569 1.02367 1.03356 1.19161 0.96088 0.95747 0.87589 1.21578 1.01095 0.92192 1.02382 1.21956 1.00750 1.00343 0.96862 1.23571 0.98795 0.83877 0.99798 1.70335 1.17545 1.31276 1.04510 1.22095 1.05226 0.90778 1.01712 1.21558 1.01367 1.00048 0.91524 1.45477 1.34353 1.13452 1.19332 1.22248 0.91828 0.89032 0.97103 1.18865 0.96175 0.89422 0.93278 0.98261 1.21352 1.11168 0.94074 1.30823 0.91863 1.25692 0.97758 0.99691 0.94935 1.69992 1.33768 1.15671 1.35592 0.85508 0.79239 0.78734 0.78211 1.18786 1.20812 1.20667 1.21589 0.94570 1.00930 0.97711 1.20228 0.99352 0.89916 0.98307 0.93006 0.88648 0.93162 0.92976 0.89562 0.93109 0.93349 0.88513 0.93419 0.79916 0.89516 0.90406 0.92717 0.95006 0.90227 0.91559 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.31 71.98 0.60 -2.92 16 2 C 0.02 0.44 0.81 -52.93 -0.04 0.40 16 3 C -0.11 -2.70 7.96 71.98 0.57 -2.12 16 4 C -0.14 -3.52 8.37 71.98 0.60 -2.92 16 5 C 0.20 7.27 6.25 138.25 0.86 8.13 16 6 N -0.52 -19.77 10.55 -188.78 -1.99 -21.76 16 7 C -0.05 -1.91 11.84 83.30 0.99 -0.93 16 8 C -0.03 -1.17 6.57 40.73 0.27 -0.90 16 9 N -0.45 -17.45 3.13 -500.12 -1.57 -19.02 16 10 C 0.12 4.77 4.42 86.48 0.38 5.15 16 11 C 0.04 1.99 2.10 -11.40 -0.02 1.96 16 12 H 0.00 -0.04 8.11 -2.39 -0.02 -0.06 16 13 C -0.54 -27.52 8.55 25.60 0.22 -27.30 16 14 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 15 C 0.02 0.99 5.27 84.66 0.45 1.44 16 16 N -0.91 -49.96 11.28 21.45 0.24 -49.72 16 17 Si 0.96 41.16 29.54 68.60 2.03 43.19 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 C -0.11 -5.04 5.12 30.81 0.16 -4.88 16 22 C -0.04 -1.57 6.31 30.03 0.19 -1.38 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.34 5.51 -2.39 -0.01 1.33 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.32 5.81 -2.39 -0.01 1.30 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.18 5.70 8.06 -2.91 -0.02 5.68 16 33 H 0.09 3.27 5.78 -2.39 -0.01 3.25 16 34 H 0.08 3.03 7.20 -2.39 -0.02 3.01 16 35 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 36 H 0.03 1.43 8.12 -2.39 -0.02 1.41 16 37 H 0.08 4.10 5.85 -2.39 -0.01 4.08 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -59.47 301.45 4.95 -54.52 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.02 Total: 19.07 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 5.22 Total: -26.27 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -3.32 Total: -90.51 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -59.47 4.95 -54.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.540 kcal (2) G-P(sol) polarization free energy of solvation -59.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds