Wall clock time and date at job start Mon Mar 30 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47535 * 2 1 4 4 N 1.31068 * 125.95905 * 275.76832 * 3 2 1 5 5 N 1.40301 * 108.26542 * 179.88009 * 4 3 2 6 6 H 0.97002 * 126.08921 * 180.17331 * 5 4 3 7 7 C 1.34324 * 107.81961 * 0.44612 * 5 4 3 8 8 C 1.35754 * 107.84287 * 359.67827 * 7 5 4 9 9 C 1.50839 * 124.11364 * 180.16226 * 8 7 5 10 10 H 1.08996 * 109.68663 * 256.75867 * 9 8 7 11 11 C 1.50701 * 109.68170 * 136.19869 * 9 8 7 12 12 H 1.07997 * 119.99863 * 305.22621 * 11 9 8 13 13 C 1.37873 * 119.99920 * 125.22988 * 11 9 8 14 14 N 1.31519 * 120.00218 * 354.98131 * 13 11 9 15 15 Si 1.86796 * 120.00093 * 174.98649 * 13 11 9 16 16 H 1.48497 * 109.47554 * 89.99720 * 15 13 11 17 17 H 1.48502 * 109.47342 * 209.99855 * 15 13 11 18 18 H 1.48496 * 109.47021 * 329.99531 * 15 13 11 19 19 C 1.53369 * 108.37919 * 16.48078 * 9 8 7 20 20 C 1.53106 * 109.51431 * 310.07940 * 19 9 8 21 21 C 1.53003 * 109.46501 * 310.28066 * 20 19 9 22 22 C 1.52997 * 109.46338 * 190.29569 * 20 19 9 23 23 C 1.50816 * 128.03382 * 179.56497 * 7 5 4 24 24 H 1.09000 * 109.47135 * 55.07960 * 1 2 3 25 25 H 1.09006 * 109.47234 * 295.08241 * 1 2 3 26 26 H 1.08996 * 109.47808 * 175.07882 * 1 2 3 27 27 H 1.09008 * 109.47029 * 120.00296 * 2 1 3 28 28 H 1.09003 * 109.46795 * 239.99659 * 2 1 3 29 29 H 0.96995 * 120.00317 * 185.00762 * 14 13 11 30 30 H 1.09000 * 109.46558 * 190.06301 * 19 9 8 31 31 H 1.09000 * 109.45768 * 70.08632 * 19 9 8 32 32 H 1.08994 * 109.47299 * 180.02562 * 21 20 19 33 33 H 1.09004 * 109.47005 * 300.02983 * 21 20 19 34 34 H 1.09004 * 109.46922 * 60.02592 * 21 20 19 35 35 H 1.09003 * 109.47010 * 299.97240 * 22 20 19 36 36 H 1.08998 * 109.47258 * 59.96776 * 22 20 19 37 37 H 1.08994 * 109.47287 * 179.97438 * 22 20 19 38 38 H 1.09001 * 109.68797 * 316.36427 * 23 7 5 39 39 H 1.08997 * 109.68520 * 76.88673 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1885 2.1819 -1.0555 5 7 2.6719 3.4287 -0.6310 6 1 2.8757 4.1867 -1.2009 7 6 2.8080 3.3838 0.7046 8 6 2.4177 2.1521 1.1212 9 6 2.4196 1.7066 2.5623 10 1 3.2747 1.0557 2.7443 11 6 1.1430 0.9656 2.8662 12 1 0.1886 1.4314 2.6701 13 6 1.1936 -0.3069 3.3946 14 7 2.3518 -0.9124 3.5414 15 14 -0.3829 -1.1710 3.9017 16 1 -0.9193 -1.9389 2.7495 17 1 -0.0993 -2.0988 5.0260 18 1 -1.3836 -0.1621 4.3331 19 6 2.5190 2.9511 3.4531 20 6 3.6726 3.8346 2.9706 21 6 4.9315 2.9818 2.8011 22 6 3.9369 4.9351 4.0000 23 6 3.3018 4.4713 1.6254 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3634 0.4357 0.9308 26 1 -0.3634 -1.0238 -0.0882 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 2.3827 -1.8333 3.8445 30 1 2.7013 2.6465 4.4837 31 1 1.5855 3.5113 3.3997 32 1 5.7530 3.6108 2.4581 33 1 5.1952 2.5292 3.7571 34 1 4.7433 2.1978 2.0676 35 1 3.0401 5.5428 4.1206 36 1 4.2004 4.4827 4.9560 37 1 4.7584 5.5639 3.6569 38 1 4.1798 4.9495 1.1912 39 1 2.5159 5.2119 1.7735 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261012402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:45 Heat of formation + Delta-G solvation = 42.113724 kcal Electronic energy + Delta-G solvation = -19381.906875 eV Core-core repulsion = 16710.741716 eV Total energy + Delta-G solvation = -2671.165159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76227 -37.34854 -34.13787 -32.46103 -30.66414 -29.86758 -28.21682 -26.74926 -25.70938 -24.85953 -23.09092 -21.39041 -19.57604 -18.62984 -16.97886 -16.78936 -15.99540 -14.48936 -14.32395 -14.14174 -13.75101 -13.57556 -13.03348 -12.81968 -12.41932 -12.22676 -12.13904 -11.63472 -11.47142 -11.28440 -11.21179 -10.88095 -10.80374 -10.67989 -10.52918 -10.30825 -10.13600 -9.90565 -9.84955 -9.38404 -9.05614 -8.84359 -8.40892 -8.31751 -7.16970 -5.94699 -3.96560 2.72088 3.32169 3.40325 3.43292 3.64235 3.85079 4.47566 5.20993 5.24949 5.31707 5.42270 5.66623 5.80330 5.86901 6.01365 6.05719 6.08908 6.14903 6.32777 6.36408 6.39979 6.40598 6.55377 6.56849 6.66741 6.75703 6.85054 6.89694 6.94967 7.09195 7.22509 7.29388 7.35118 7.66147 7.83026 7.90871 7.99246 8.16029 8.50097 8.69692 9.13231 9.63515 11.10893 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.010886 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.807937 B = 2571.418620 C = 3564.177284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 C 0.105 3.895 4 N -0.326 5.326 5 N -0.492 5.492 6 H 0.423 0.577 7 C 0.039 3.961 8 C -0.170 4.170 9 C 0.094 3.906 10 H 0.081 0.919 11 C -0.490 4.490 12 H 0.052 0.948 13 C 0.071 3.929 14 N -0.894 5.894 15 Si 0.874 3.126 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.094 4.094 20 C -0.062 4.062 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.034 4.034 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 7.752 -2.348 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.060 4.060 4 N -0.150 5.150 5 N -0.199 5.199 6 H 0.264 0.736 7 C -0.087 4.087 8 C -0.181 4.181 9 C 0.075 3.925 10 H 0.099 0.901 11 C -0.528 4.528 12 H 0.070 0.930 13 C -0.130 4.130 14 N -0.533 5.533 15 Si 0.702 3.298 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.132 4.132 20 C -0.063 4.063 21 C -0.194 4.194 22 C -0.195 4.195 23 C -0.073 4.073 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.128 0.872 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.488 7.651 -3.455 8.756 hybrid contribution -0.726 -0.016 0.681 0.995 sum 1.762 7.635 -2.775 8.313 Atomic orbital electron populations 1.21695 0.95423 1.00255 1.02235 1.19915 0.95606 0.89128 1.02906 1.22003 0.97118 0.96700 0.90194 1.77243 1.23806 0.91028 1.22968 1.45744 1.55887 1.12993 1.05293 0.73570 1.20868 1.04750 0.98533 0.84584 1.20804 1.06140 0.92007 0.99114 1.17658 0.99220 0.92017 0.83637 0.90120 1.20940 0.92061 0.99844 1.39995 0.93009 1.24859 0.95375 0.97545 0.95216 1.69859 1.23569 1.12027 1.47814 0.86870 0.84500 0.79827 0.78584 1.20327 1.21392 1.19923 1.21858 0.94422 0.96930 0.99986 1.20644 0.97441 0.95411 0.92800 1.21881 0.95454 0.99752 1.02354 1.21858 1.00540 0.98067 0.99020 1.20237 0.99348 0.94159 0.93543 0.94392 0.90750 0.93661 0.87188 0.93265 0.92895 0.92780 0.93722 0.94470 0.92732 0.91321 0.93105 0.92565 0.93612 0.91933 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.79 37.16 0.36 -2.42 16 2 C -0.04 -0.78 5.63 -27.89 -0.16 -0.94 16 3 C 0.10 2.35 6.36 -82.52 -0.52 1.83 16 4 N -0.33 -6.94 12.71 33.59 0.43 -6.51 16 5 N -0.49 -8.95 7.34 33.48 0.25 -8.70 16 6 H 0.42 6.01 8.96 -182.44 -1.64 4.38 16 7 C 0.04 0.75 6.62 -82.33 -0.55 0.20 16 8 C -0.17 -3.77 4.65 -105.05 -0.49 -4.26 16 9 C 0.09 2.20 2.01 -92.66 -0.19 2.01 16 10 H 0.08 2.11 5.78 -51.93 -0.30 1.81 16 11 C -0.49 -12.41 5.31 -34.44 -0.18 -12.59 16 12 H 0.05 1.36 7.12 -52.49 -0.37 0.98 16 13 C 0.07 1.83 4.55 -17.82 -0.08 1.75 16 14 N -0.89 -24.05 12.57 55.43 0.70 -23.35 16 15 Si 0.87 20.33 29.54 -169.99 -5.02 15.30 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.09 -1.91 4.15 -26.49 -0.11 -2.02 16 20 C -0.06 -1.03 0.77 -154.26 -0.12 -1.15 16 21 C -0.14 -2.33 7.70 37.16 0.29 -2.05 16 22 C -0.14 -1.88 8.44 37.16 0.31 -1.57 16 23 C -0.03 -0.53 5.05 -27.63 -0.14 -0.67 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.63 6.10 -51.93 -0.32 1.31 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.11 2.64 6.31 -51.92 -0.33 2.32 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 30 H 0.05 1.14 8.11 -51.93 -0.42 0.71 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.35 5.61 -51.93 -0.29 1.06 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 300.29 15.07 4.53 4.53 Total: -1.00 -27.63 300.29 -8.14 -35.78 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.45 Total: 4.83 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -1.57 Total: -21.88 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 1.37 Total: -38.56 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.63 -8.14 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.891 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds