Wall clock time and date at job start Mon Mar 30 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47535 * 2 1 4 4 N 1.31068 * 125.95905 * 275.76832 * 3 2 1 5 5 N 1.40301 * 108.26542 * 179.88009 * 4 3 2 6 6 H 0.97002 * 126.08921 * 180.17331 * 5 4 3 7 7 C 1.34324 * 107.81961 * 0.44612 * 5 4 3 8 8 C 1.35754 * 107.84287 * 359.67827 * 7 5 4 9 9 C 1.50839 * 124.11364 * 180.16226 * 8 7 5 10 10 H 1.08996 * 109.68663 * 256.75867 * 9 8 7 11 11 C 1.50701 * 109.68170 * 136.19869 * 9 8 7 12 12 H 1.07997 * 119.99863 * 305.22621 * 11 9 8 13 13 C 1.37873 * 119.99920 * 125.22988 * 11 9 8 14 14 N 1.31519 * 120.00218 * 354.98131 * 13 11 9 15 15 Si 1.86796 * 120.00093 * 174.98649 * 13 11 9 16 16 H 1.48497 * 109.47554 * 89.99720 * 15 13 11 17 17 H 1.48502 * 109.47342 * 209.99855 * 15 13 11 18 18 H 1.48496 * 109.47021 * 329.99531 * 15 13 11 19 19 C 1.53369 * 108.37919 * 16.48078 * 9 8 7 20 20 C 1.53106 * 109.51431 * 310.07940 * 19 9 8 21 21 C 1.53003 * 109.46501 * 310.28066 * 20 19 9 22 22 C 1.52997 * 109.46338 * 190.29569 * 20 19 9 23 23 C 1.50816 * 128.03382 * 179.56497 * 7 5 4 24 24 H 1.09000 * 109.47135 * 55.07960 * 1 2 3 25 25 H 1.09006 * 109.47234 * 295.08241 * 1 2 3 26 26 H 1.08996 * 109.47808 * 175.07882 * 1 2 3 27 27 H 1.09008 * 109.47029 * 120.00296 * 2 1 3 28 28 H 1.09003 * 109.46795 * 239.99659 * 2 1 3 29 29 H 0.96995 * 120.00317 * 185.00762 * 14 13 11 30 30 H 1.09000 * 109.46558 * 190.06301 * 19 9 8 31 31 H 1.09000 * 109.45768 * 70.08632 * 19 9 8 32 32 H 1.08994 * 109.47299 * 180.02562 * 21 20 19 33 33 H 1.09004 * 109.47005 * 300.02983 * 21 20 19 34 34 H 1.09004 * 109.46922 * 60.02592 * 21 20 19 35 35 H 1.09003 * 109.47010 * 299.97240 * 22 20 19 36 36 H 1.08998 * 109.47258 * 59.96776 * 22 20 19 37 37 H 1.08994 * 109.47287 * 179.97438 * 22 20 19 38 38 H 1.09001 * 109.68797 * 316.36427 * 23 7 5 39 39 H 1.08997 * 109.68520 * 76.88673 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1885 2.1819 -1.0555 5 7 2.6719 3.4287 -0.6310 6 1 2.8757 4.1867 -1.2009 7 6 2.8080 3.3838 0.7046 8 6 2.4177 2.1521 1.1212 9 6 2.4196 1.7066 2.5623 10 1 3.2747 1.0557 2.7443 11 6 1.1430 0.9656 2.8662 12 1 0.1886 1.4314 2.6701 13 6 1.1936 -0.3069 3.3946 14 7 2.3518 -0.9124 3.5414 15 14 -0.3829 -1.1710 3.9017 16 1 -0.9193 -1.9389 2.7495 17 1 -0.0993 -2.0988 5.0260 18 1 -1.3836 -0.1621 4.3331 19 6 2.5190 2.9511 3.4531 20 6 3.6726 3.8346 2.9706 21 6 4.9315 2.9818 2.8011 22 6 3.9369 4.9351 4.0000 23 6 3.3018 4.4713 1.6254 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3634 0.4357 0.9308 26 1 -0.3634 -1.0238 -0.0882 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 2.3827 -1.8333 3.8445 30 1 2.7013 2.6465 4.4837 31 1 1.5855 3.5113 3.3997 32 1 5.7530 3.6108 2.4581 33 1 5.1952 2.5292 3.7571 34 1 4.7433 2.1978 2.0676 35 1 3.0401 5.5428 4.1206 36 1 4.2004 4.4827 4.9560 37 1 4.7584 5.5639 3.6569 38 1 4.1798 4.9495 1.1912 39 1 2.5159 5.2119 1.7735 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261012402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:45 Heat of formation + Delta-G solvation = 26.804822 kcal Electronic energy + Delta-G solvation = -19382.570719 eV Core-core repulsion = 16710.741716 eV Total energy + Delta-G solvation = -2671.829003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.33754 -38.79941 -35.87983 -34.23650 -32.35771 -31.40246 -29.83678 -28.04542 -27.08670 -26.71527 -24.74782 -23.10257 -21.06399 -20.27708 -18.56105 -18.45484 -17.77175 -16.34483 -15.86452 -15.62849 -15.14091 -15.08132 -14.71782 -14.39030 -14.21832 -13.74725 -13.46302 -13.25400 -12.94865 -12.76016 -12.69597 -12.65846 -12.45312 -12.24500 -12.14670 -11.94360 -11.78508 -11.47287 -11.32685 -11.07409 -10.90242 -10.55382 -10.33036 -9.90144 -8.83570 -7.92765 -5.99126 1.14698 1.43780 1.47701 1.53771 2.16021 2.20627 2.53987 3.32588 3.85521 3.91925 4.10776 4.12019 4.36324 4.51905 4.69348 4.71184 4.73384 4.75115 4.83464 4.90083 4.96172 4.99925 5.08931 5.14170 5.21053 5.25557 5.34849 5.42251 5.49435 5.52473 5.57134 5.63339 5.72033 5.84318 5.98671 6.05365 6.19717 6.58516 6.76155 7.03719 7.18029 7.62406 9.11545 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.010886 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.807937 B = 2571.418620 C = 3564.177284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.035 4.035 3 C 0.084 3.916 4 N -0.341 5.341 5 N -0.472 5.472 6 H 0.444 0.556 7 C 0.061 3.939 8 C -0.211 4.211 9 C 0.097 3.903 10 H 0.044 0.956 11 C -0.487 4.487 12 H 0.038 0.962 13 C 0.036 3.964 14 N -0.923 5.923 15 Si 0.917 3.083 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.273 1.273 19 C -0.089 4.089 20 C -0.058 4.058 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.032 4.032 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.258 0.742 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.034 0.966 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 10.288 -3.035 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.074 4.074 3 C -0.080 4.080 4 N -0.166 5.166 5 N -0.182 5.182 6 H 0.289 0.711 7 C -0.067 4.067 8 C -0.222 4.222 9 C 0.078 3.922 10 H 0.062 0.938 11 C -0.525 4.525 12 H 0.056 0.944 13 C -0.162 4.162 14 N -0.564 5.564 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.216 1.216 18 H -0.198 1.198 19 C -0.127 4.127 20 C -0.059 4.059 21 C -0.190 4.190 22 C -0.188 4.188 23 C -0.070 4.070 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.783 10.205 -4.168 11.369 hybrid contribution -0.787 -0.748 0.852 1.380 sum 1.996 9.457 -3.316 10.219 Atomic orbital electron populations 1.21595 0.94452 1.01199 1.01453 1.19817 0.96454 0.89224 1.01936 1.22112 0.97964 0.97128 0.90790 1.77165 1.24680 0.92094 1.22683 1.45732 1.54262 1.12792 1.05395 0.71076 1.21284 1.02093 0.98252 0.85112 1.20735 1.09196 0.93919 0.98394 1.17449 0.96676 0.92591 0.85511 0.93751 1.21078 0.92386 1.00004 1.39044 0.94350 1.25302 0.97202 0.98131 0.95579 1.69974 1.25017 1.12077 1.49294 0.86184 0.82105 0.79000 0.78305 1.19576 1.21624 1.19818 1.21705 0.96133 0.96464 0.98433 1.20583 0.95247 0.95628 0.94394 1.21824 0.96836 0.99403 1.00957 1.21790 1.02128 0.97188 0.97730 1.20420 1.01465 0.93238 0.91924 0.93273 0.92896 0.92162 0.90231 0.92037 0.93212 0.94554 0.94234 0.91377 0.93738 0.94663 0.92084 0.93001 0.90788 0.88229 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.79 71.98 0.70 -4.52 16 2 C -0.03 -1.54 5.63 29.85 0.17 -1.37 16 3 C 0.08 3.78 6.36 42.93 0.27 4.05 16 4 N -0.34 -14.09 12.71 -47.63 -0.61 -14.70 16 5 N -0.47 -15.93 7.34 -47.99 -0.35 -16.28 16 6 H 0.44 10.94 8.96 -213.19 -1.91 9.03 16 7 C 0.06 2.21 6.62 41.64 0.28 2.49 16 8 C -0.21 -9.41 4.65 -20.14 -0.09 -9.50 16 9 C 0.10 4.68 2.01 -12.12 -0.02 4.66 16 10 H 0.04 2.45 5.78 -2.39 -0.01 2.43 16 11 C -0.49 -25.47 5.31 25.60 0.14 -25.33 16 12 H 0.04 2.07 7.12 -2.91 -0.02 2.05 16 13 C 0.04 1.91 4.55 84.65 0.39 2.29 16 14 N -0.92 -51.84 12.57 21.45 0.27 -51.57 16 15 Si 0.92 42.55 29.54 68.60 2.03 44.58 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 C -0.09 -3.63 4.15 30.75 0.13 -3.51 16 20 C -0.06 -1.78 0.77 -52.02 -0.04 -1.82 16 21 C -0.13 -4.34 7.70 71.98 0.55 -3.78 16 22 C -0.13 -3.10 8.44 71.98 0.61 -2.49 16 23 C -0.03 -0.87 5.05 30.01 0.15 -0.71 16 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 2.35 6.10 -2.38 -0.01 2.34 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.08 4.00 6.31 -2.38 -0.02 3.99 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 30 H 0.04 1.55 8.11 -2.39 -0.02 1.54 16 31 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.03 1.38 5.61 -2.39 -0.01 1.36 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 2.09 8.12 -2.39 -0.02 2.07 16 39 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -61.78 300.29 3.69 -58.09 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.87 Total: 19.44 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 3.23 Total: -39.55 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -0.69 Total: -82.55 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -61.78 3.69 -58.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.894 kcal (2) G-P(sol) polarization free energy of solvation -61.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds