Wall clock time and date at job start Mon Mar 30 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46804 * 2 1 4 4 N 1.31069 * 125.96122 * 84.38866 * 3 2 1 5 5 N 1.40297 * 108.26918 * 180.02562 * 4 3 2 6 6 H 0.96997 * 126.08672 * 179.97438 * 5 4 3 7 7 C 1.34321 * 107.81690 * 359.93483 * 5 4 3 8 8 C 1.35752 * 107.84551 * 0.09449 * 7 5 4 9 9 C 1.50835 * 124.11194 * 179.80120 * 8 7 5 10 10 H 1.09002 * 109.68282 * 103.19375 * 9 8 7 11 11 C 1.50698 * 109.68588 * 223.74662 * 9 8 7 12 12 H 1.08009 * 119.99929 * 53.57920 * 11 9 8 13 13 C 1.37882 * 120.00221 * 233.57639 * 11 9 8 14 14 N 1.31513 * 119.99906 * 4.25820 * 13 11 9 15 15 Si 1.86801 * 119.99845 * 184.25842 * 13 11 9 16 16 H 1.48502 * 109.47097 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46943 * 120.00235 * 15 13 11 18 18 H 1.48501 * 109.46827 * 240.00040 * 15 13 11 19 19 C 1.53366 * 108.37987 * 343.47095 * 9 8 7 20 20 C 1.53109 * 109.50905 * 49.94243 * 19 9 8 21 21 C 1.53002 * 109.46379 * 49.72829 * 20 19 9 22 22 C 1.53000 * 109.46315 * 169.71408 * 20 19 9 23 23 C 1.50820 * 128.03433 * 180.12142 * 7 5 4 24 24 H 1.08997 * 109.47046 * 183.19502 * 1 2 3 25 25 H 1.08996 * 109.47069 * 303.19465 * 1 2 3 26 26 H 1.09001 * 109.46973 * 63.19751 * 1 2 3 27 27 H 1.08999 * 109.46990 * 239.99839 * 2 1 3 28 28 H 1.09002 * 109.46816 * 119.99926 * 2 1 3 29 29 H 0.96996 * 119.99827 * 174.99411 * 14 13 11 30 30 H 1.09000 * 109.46591 * 289.92479 * 19 9 8 31 31 H 1.09006 * 109.46289 * 169.94903 * 19 9 8 32 32 H 1.09001 * 109.46851 * 60.00232 * 21 20 19 33 33 H 1.08999 * 109.46855 * 179.97438 * 21 20 19 34 34 H 1.08999 * 109.47289 * 299.99947 * 21 20 19 35 35 H 1.09003 * 109.47047 * 60.00015 * 22 20 19 36 36 H 1.08998 * 109.47171 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.47190 * 299.99963 * 22 20 19 38 38 H 1.09004 * 109.68454 * 43.71905 * 23 7 5 39 39 H 1.09001 * 109.71376 * 283.17831 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1910 2.1811 1.0558 5 7 2.6753 3.4276 0.6314 6 1 2.8828 4.1842 1.2018 7 6 2.8011 3.3862 -0.7052 8 6 2.4085 2.1554 -1.1221 9 6 2.3990 1.7140 -2.5644 10 1 3.2537 1.0651 -2.7554 11 6 1.1213 0.9715 -2.8597 12 1 0.1679 1.4273 -2.6363 13 6 1.1693 -0.2896 -3.4150 14 7 2.3289 -0.8787 -3.6097 15 14 -0.4128 -1.1614 -3.8909 16 1 -1.5729 -0.2912 -3.5712 17 1 -0.3985 -1.4531 -5.3469 18 1 -0.5246 -2.4331 -3.1323 19 6 2.4887 2.9612 -3.4524 20 6 3.6452 3.8450 -2.9774 21 6 4.9069 2.9936 -2.8217 22 6 3.8988 4.9491 -4.0058 23 6 3.2854 4.4771 -1.6272 24 1 -0.3633 -1.0260 0.0573 25 1 -0.3633 0.5626 0.8599 26 1 -0.3633 0.4634 -0.9173 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3604 -1.7929 -3.9322 30 1 1.5549 3.5199 -3.3895 31 1 2.6626 2.6598 -4.4855 32 1 5.1630 2.5448 -3.7815 33 1 5.7303 3.6228 -2.4840 34 1 4.7262 2.2069 -2.0893 35 1 2.9998 5.5555 -4.1170 36 1 4.7223 5.5781 -3.6680 37 1 4.1550 4.5000 -4.9653 38 1 4.1666 4.9552 -1.1993 39 1 2.4975 5.2173 -1.7668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261012403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:47 Heat of formation + Delta-G solvation = 41.961028 kcal Electronic energy + Delta-G solvation = -19379.051835 eV Core-core repulsion = 16707.880054 eV Total energy + Delta-G solvation = -2671.171780 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76842 -37.34955 -34.13913 -32.47229 -30.66281 -29.87236 -28.22088 -26.74768 -25.71118 -24.86055 -23.10197 -21.39447 -19.57857 -18.63998 -16.98021 -16.79292 -15.99994 -14.48533 -14.32973 -14.14873 -13.75424 -13.57637 -13.03127 -12.82290 -12.42206 -12.22813 -12.14170 -11.64437 -11.46966 -11.28635 -11.21479 -10.89530 -10.82958 -10.67438 -10.52932 -10.31770 -10.11682 -9.90580 -9.84961 -9.38401 -9.04426 -8.85078 -8.41858 -8.32460 -7.17497 -5.94962 -3.96712 2.71544 3.30811 3.40651 3.43941 3.63701 3.84258 4.47525 5.20963 5.24861 5.31720 5.42362 5.65984 5.80055 5.86876 6.01321 6.05472 6.08676 6.14341 6.32863 6.35971 6.38963 6.40379 6.54813 6.56793 6.66630 6.75779 6.83707 6.89705 6.95091 7.09356 7.22228 7.28940 7.33075 7.66189 7.82517 7.91107 7.99000 8.15482 8.49910 8.69077 9.13349 9.63503 11.10839 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.010898 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.411106 B = 2568.630214 C = 3566.643733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 C 0.104 3.896 4 N -0.326 5.326 5 N -0.491 5.491 6 H 0.423 0.577 7 C 0.040 3.960 8 C -0.170 4.170 9 C 0.094 3.906 10 H 0.081 0.919 11 C -0.489 4.489 12 H 0.053 0.947 13 C 0.071 3.929 14 N -0.894 5.894 15 Si 0.875 3.125 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.283 1.283 19 C -0.094 4.094 20 C -0.062 4.062 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.034 4.034 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.260 0.740 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 7.747 2.466 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 C -0.061 4.061 4 N -0.150 5.150 5 N -0.199 5.199 6 H 0.264 0.736 7 C -0.087 4.087 8 C -0.181 4.181 9 C 0.074 3.926 10 H 0.099 0.901 11 C -0.527 4.527 12 H 0.071 0.929 13 C -0.130 4.130 14 N -0.533 5.533 15 Si 0.703 3.297 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.209 1.209 19 C -0.132 4.132 20 C -0.063 4.063 21 C -0.194 4.194 22 C -0.195 4.195 23 C -0.073 4.073 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.492 7.650 3.574 8.804 hybrid contribution -0.718 -0.029 -0.680 0.989 sum 1.774 7.621 2.894 8.343 Atomic orbital electron populations 1.21709 0.95400 1.00391 1.02243 1.19898 0.95631 0.89115 1.02807 1.22002 0.97174 0.96688 0.90204 1.77242 1.23726 0.91066 1.22986 1.45741 1.55853 1.13082 1.05220 0.73559 1.20868 1.04758 0.98529 0.84533 1.20796 1.06236 0.91979 0.99089 1.17660 0.99234 0.92044 0.83615 0.90137 1.20988 0.92110 1.00697 1.38944 0.92921 1.24864 0.95383 0.97562 0.95238 1.69869 1.23461 1.12897 1.47050 0.86811 0.84636 0.79949 0.78337 1.19680 1.21197 1.20879 1.21858 0.94375 0.96904 1.00037 1.20646 0.97481 0.95415 0.92762 1.21880 0.95420 0.99754 1.02376 1.21859 1.00541 0.98046 0.99038 1.20239 0.99420 0.94123 0.93513 0.93631 0.94375 0.90622 0.87374 0.93224 0.92955 0.93728 0.92765 0.92725 0.94479 0.91331 0.93102 0.93616 0.92565 0.91929 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.78 37.16 0.36 -2.43 16 2 C -0.04 -0.76 5.63 -27.88 -0.16 -0.91 16 3 C 0.10 2.33 6.35 -82.52 -0.52 1.81 16 4 N -0.33 -6.91 12.71 33.59 0.43 -6.48 16 5 N -0.49 -8.92 7.34 33.48 0.25 -8.68 16 6 H 0.42 6.00 8.96 -182.45 -1.64 4.36 16 7 C 0.04 0.76 6.62 -82.33 -0.55 0.21 16 8 C -0.17 -3.77 4.65 -105.05 -0.49 -4.26 16 9 C 0.09 2.19 2.01 -92.67 -0.19 2.01 16 10 H 0.08 2.10 5.78 -51.93 -0.30 1.80 16 11 C -0.49 -12.38 5.30 -34.44 -0.18 -12.56 16 12 H 0.05 1.38 7.00 -52.48 -0.37 1.01 16 13 C 0.07 1.82 4.64 -17.82 -0.08 1.74 16 14 N -0.89 -24.09 12.62 55.43 0.70 -23.39 16 15 Si 0.87 20.38 29.54 -169.99 -5.02 15.35 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C -0.09 -1.91 4.15 -26.49 -0.11 -2.02 16 20 C -0.06 -1.04 0.77 -154.26 -0.12 -1.15 16 21 C -0.14 -2.33 7.70 37.16 0.29 -2.05 16 22 C -0.14 -1.89 8.44 37.16 0.31 -1.57 16 23 C -0.03 -0.53 5.05 -27.64 -0.14 -0.67 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.66 6.00 -51.93 -0.31 1.34 16 27 H 0.11 2.58 6.46 -51.93 -0.34 2.25 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.05 1.14 8.11 -51.93 -0.42 0.72 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.35 5.61 -51.93 -0.29 1.05 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -27.69 300.34 -8.14 -35.83 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.44 Total: 4.70 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.57 Total: -21.86 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 1.37 Total: -38.55 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.69 -8.14 -35.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.793 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds