Wall clock time and date at job start Mon Mar 30 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46804 * 2 1 4 4 N 1.31069 * 125.96122 * 84.38866 * 3 2 1 5 5 N 1.40297 * 108.26918 * 180.02562 * 4 3 2 6 6 H 0.96997 * 126.08672 * 179.97438 * 5 4 3 7 7 C 1.34321 * 107.81690 * 359.93483 * 5 4 3 8 8 C 1.35752 * 107.84551 * 0.09449 * 7 5 4 9 9 C 1.50835 * 124.11194 * 179.80120 * 8 7 5 10 10 H 1.09002 * 109.68282 * 103.19375 * 9 8 7 11 11 C 1.50698 * 109.68588 * 223.74662 * 9 8 7 12 12 H 1.08009 * 119.99929 * 53.57920 * 11 9 8 13 13 C 1.37882 * 120.00221 * 233.57639 * 11 9 8 14 14 N 1.31513 * 119.99906 * 4.25820 * 13 11 9 15 15 Si 1.86801 * 119.99845 * 184.25842 * 13 11 9 16 16 H 1.48502 * 109.47097 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46943 * 120.00235 * 15 13 11 18 18 H 1.48501 * 109.46827 * 240.00040 * 15 13 11 19 19 C 1.53366 * 108.37987 * 343.47095 * 9 8 7 20 20 C 1.53109 * 109.50905 * 49.94243 * 19 9 8 21 21 C 1.53002 * 109.46379 * 49.72829 * 20 19 9 22 22 C 1.53000 * 109.46315 * 169.71408 * 20 19 9 23 23 C 1.50820 * 128.03433 * 180.12142 * 7 5 4 24 24 H 1.08997 * 109.47046 * 183.19502 * 1 2 3 25 25 H 1.08996 * 109.47069 * 303.19465 * 1 2 3 26 26 H 1.09001 * 109.46973 * 63.19751 * 1 2 3 27 27 H 1.08999 * 109.46990 * 239.99839 * 2 1 3 28 28 H 1.09002 * 109.46816 * 119.99926 * 2 1 3 29 29 H 0.96996 * 119.99827 * 174.99411 * 14 13 11 30 30 H 1.09000 * 109.46591 * 289.92479 * 19 9 8 31 31 H 1.09006 * 109.46289 * 169.94903 * 19 9 8 32 32 H 1.09001 * 109.46851 * 60.00232 * 21 20 19 33 33 H 1.08999 * 109.46855 * 179.97438 * 21 20 19 34 34 H 1.08999 * 109.47289 * 299.99947 * 21 20 19 35 35 H 1.09003 * 109.47047 * 60.00015 * 22 20 19 36 36 H 1.08998 * 109.47171 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.47190 * 299.99963 * 22 20 19 38 38 H 1.09004 * 109.68454 * 43.71905 * 23 7 5 39 39 H 1.09001 * 109.71376 * 283.17831 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1910 2.1811 1.0558 5 7 2.6753 3.4276 0.6314 6 1 2.8828 4.1842 1.2018 7 6 2.8011 3.3862 -0.7052 8 6 2.4085 2.1554 -1.1221 9 6 2.3990 1.7140 -2.5644 10 1 3.2537 1.0651 -2.7554 11 6 1.1213 0.9715 -2.8597 12 1 0.1679 1.4273 -2.6363 13 6 1.1693 -0.2896 -3.4150 14 7 2.3289 -0.8787 -3.6097 15 14 -0.4128 -1.1614 -3.8909 16 1 -1.5729 -0.2912 -3.5712 17 1 -0.3985 -1.4531 -5.3469 18 1 -0.5246 -2.4331 -3.1323 19 6 2.4887 2.9612 -3.4524 20 6 3.6452 3.8450 -2.9774 21 6 4.9069 2.9936 -2.8217 22 6 3.8988 4.9491 -4.0058 23 6 3.2854 4.4771 -1.6272 24 1 -0.3633 -1.0260 0.0573 25 1 -0.3633 0.5626 0.8599 26 1 -0.3633 0.4634 -0.9173 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3604 -1.7929 -3.9322 30 1 1.5549 3.5199 -3.3895 31 1 2.6626 2.6598 -4.4855 32 1 5.1630 2.5448 -3.7815 33 1 5.7303 3.6228 -2.4840 34 1 4.7262 2.2069 -2.0893 35 1 2.9998 5.5555 -4.1170 36 1 4.7223 5.5781 -3.6680 37 1 4.1550 4.5000 -4.9653 38 1 4.1666 4.9552 -1.1993 39 1 2.4975 5.2173 -1.7668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261012403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:47 Heat of formation + Delta-G solvation = 26.589028 kcal Electronic energy + Delta-G solvation = -19379.718415 eV Core-core repulsion = 16707.880054 eV Total energy + Delta-G solvation = -2671.838360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.34088 -38.80062 -35.87740 -34.24701 -32.35544 -31.40377 -29.83877 -28.04566 -27.08802 -26.71852 -24.74989 -23.10727 -21.06585 -20.28225 -18.56462 -18.45617 -17.77664 -16.34661 -15.86803 -15.63336 -15.14107 -15.07977 -14.70622 -14.39435 -14.22434 -13.74537 -13.46728 -13.26140 -12.95377 -12.77145 -12.70752 -12.68555 -12.43916 -12.23571 -12.14903 -11.94571 -11.76774 -11.46444 -11.32994 -11.07419 -10.89464 -10.57114 -10.33776 -9.90355 -8.83918 -7.93332 -5.99511 1.14512 1.41545 1.47120 1.54766 2.15618 2.20380 2.53582 3.32297 3.85394 3.91844 4.10790 4.11891 4.36055 4.51792 4.69401 4.71110 4.73328 4.75058 4.83462 4.90077 4.96223 4.99871 5.08961 5.14100 5.20748 5.25410 5.34820 5.42126 5.49407 5.52796 5.56812 5.62723 5.71893 5.84415 5.98721 6.05276 6.19328 6.58251 6.75910 7.03554 7.17835 7.62111 9.11359 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.010898 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.411106 B = 2568.630214 C = 3566.643733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C 0.083 3.917 4 N -0.341 5.341 5 N -0.472 5.472 6 H 0.444 0.556 7 C 0.062 3.938 8 C -0.212 4.212 9 C 0.097 3.903 10 H 0.044 0.956 11 C -0.485 4.485 12 H 0.039 0.961 13 C 0.035 3.965 14 N -0.924 5.924 15 Si 0.918 3.082 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.279 1.279 19 C -0.089 4.089 20 C -0.058 4.058 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.032 4.032 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.258 0.742 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 10.270 3.182 11.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.073 4.073 3 C -0.080 4.080 4 N -0.166 5.166 5 N -0.182 5.182 6 H 0.289 0.711 7 C -0.067 4.067 8 C -0.223 4.223 9 C 0.078 3.922 10 H 0.062 0.938 11 C -0.523 4.523 12 H 0.057 0.943 13 C -0.163 4.163 14 N -0.564 5.564 15 Si 0.745 3.255 16 H -0.194 1.194 17 H -0.214 1.214 18 H -0.205 1.205 19 C -0.127 4.127 20 C -0.059 4.059 21 C -0.190 4.190 22 C -0.188 4.188 23 C -0.071 4.071 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.789 10.190 4.315 11.412 hybrid contribution -0.779 -0.757 -0.858 1.385 sum 2.010 9.433 3.457 10.245 Atomic orbital electron populations 1.21610 0.94416 1.01360 1.01466 1.19801 0.96486 0.89173 1.01842 1.22119 0.97998 0.97137 0.90782 1.77165 1.24592 0.92125 1.22699 1.45729 1.54234 1.12884 1.05316 0.71066 1.21281 1.02091 0.98252 0.85074 1.20725 1.09324 0.93899 0.98351 1.17449 0.96678 0.92612 0.85505 0.93779 1.21118 0.92429 1.00833 1.37922 0.94290 1.25309 0.97214 0.98184 0.95607 1.69981 1.24908 1.13007 1.48545 0.86119 0.82283 0.79254 0.77806 1.19382 1.21372 1.20487 1.21702 0.96117 0.96452 0.98434 1.20583 0.95259 0.95635 0.94385 1.21822 0.96824 0.99407 1.00957 1.21791 1.02153 0.97162 0.97732 1.20420 1.01575 0.93198 0.91858 0.92019 0.93223 0.92876 0.90468 0.91927 0.93224 0.94223 0.94607 0.93770 0.91370 0.94651 0.92073 0.90781 0.93031 0.88216 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 9.78 71.98 0.70 -4.54 16 2 C -0.03 -1.47 5.63 29.85 0.17 -1.30 16 3 C 0.08 3.75 6.35 42.93 0.27 4.02 16 4 N -0.34 -14.03 12.71 -47.63 -0.61 -14.63 16 5 N -0.47 -15.88 7.34 -47.99 -0.35 -16.23 16 6 H 0.44 10.91 8.96 -213.20 -1.91 8.99 16 7 C 0.06 2.22 6.62 41.64 0.28 2.50 16 8 C -0.21 -9.42 4.65 -20.14 -0.09 -9.51 16 9 C 0.10 4.68 2.01 -12.12 -0.02 4.65 16 10 H 0.04 2.43 5.78 -2.39 -0.01 2.42 16 11 C -0.48 -25.36 5.30 25.60 0.14 -25.23 16 12 H 0.04 2.11 7.00 -2.91 -0.02 2.09 16 13 C 0.03 1.85 4.64 84.66 0.39 2.25 16 14 N -0.92 -51.98 12.62 21.45 0.27 -51.70 16 15 Si 0.92 42.70 29.54 68.60 2.03 44.73 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 C -0.09 -3.63 4.15 30.75 0.13 -3.50 16 20 C -0.06 -1.79 0.77 -52.02 -0.04 -1.83 16 21 C -0.13 -4.34 7.70 71.98 0.55 -3.79 16 22 C -0.13 -3.11 8.44 71.98 0.61 -2.50 16 23 C -0.03 -0.87 5.05 30.01 0.15 -0.72 16 24 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.05 2.36 6.00 -2.39 -0.01 2.34 16 27 H 0.08 3.86 6.46 -2.39 -0.02 3.85 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 30 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.04 1.54 8.11 -2.38 -0.02 1.52 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.03 1.38 5.61 -2.39 -0.01 1.37 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 2.09 8.12 -2.38 -0.02 2.07 16 39 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -61.95 300.34 3.70 -58.25 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.87 Total: 19.08 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 3.23 Total: -39.50 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -0.69 Total: -82.57 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -61.95 3.70 -58.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.841 kcal (2) G-P(sol) polarization free energy of solvation -61.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds