Wall clock time and date at job start Mon Mar 30 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30505 * 125.65167 * 2 1 4 4 C 1.34128 * 109.25416 * 180.02562 * 3 2 1 5 5 C 1.34664 * 108.02515 * 359.72906 * 4 3 2 6 6 N 1.35045 * 125.65238 * 180.02562 * 2 1 3 7 7 C 1.46504 * 126.39270 * 359.96328 * 6 2 1 8 8 H 1.08993 * 109.47360 * 0.32206 * 7 6 2 9 9 C 1.52999 * 109.47256 * 240.32055 * 7 6 2 10 10 C 1.53003 * 109.46909 * 300.00033 * 9 7 6 11 11 C 1.52990 * 109.47389 * 299.99927 * 10 9 7 12 12 C 1.53008 * 109.47231 * 60.00110 * 11 10 9 13 13 C 1.52993 * 109.46681 * 299.99841 * 12 11 10 14 14 H 1.08993 * 109.47767 * 300.00053 * 13 12 11 15 15 C 1.53002 * 109.47105 * 179.97438 * 13 12 11 16 16 C 1.50701 * 109.46719 * 65.00061 * 15 13 12 17 17 H 1.07991 * 120.00526 * 0.02562 * 16 15 13 18 18 C 1.37882 * 120.00081 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00240 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47266 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47411 * 120.00236 * 20 18 16 23 23 H 1.48502 * 109.47286 * 239.99882 * 20 18 16 24 24 H 1.09003 * 109.46939 * 269.96250 * 1 2 3 25 25 H 1.09002 * 109.46873 * 29.95418 * 1 2 3 26 26 H 1.08994 * 109.47383 * 149.95617 * 1 2 3 27 27 H 1.08008 * 125.98438 * 179.97438 * 4 3 2 28 28 H 1.07995 * 126.59586 * 180.28095 * 5 4 3 29 29 H 1.08996 * 109.47355 * 59.99822 * 9 7 6 30 30 H 1.09000 * 109.47472 * 180.02562 * 9 7 6 31 31 H 1.09003 * 109.47282 * 60.00433 * 10 9 7 32 32 H 1.08998 * 109.46908 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.47137 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47627 * 300.00055 * 11 10 9 35 35 H 1.08997 * 109.46652 * 180.02562 * 12 11 10 36 36 H 1.08993 * 109.46583 * 60.00101 * 12 11 10 37 37 H 1.08994 * 109.47753 * 185.00312 * 15 13 12 38 38 H 1.09001 * 109.47149 * 305.00327 * 15 13 12 39 39 H 0.96998 * 119.99589 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5926 -0.6643 0.0051 6 7 2.2941 -1.0973 -0.0005 7 6 1.8425 -2.4910 -0.0004 8 1 0.7530 -2.5199 -0.0056 9 6 2.3654 -3.1965 1.2526 10 6 3.8948 -3.1560 1.2598 11 6 4.4298 -3.8655 0.0144 12 6 3.9069 -3.1600 -1.2386 13 6 2.3775 -3.2006 -1.2459 14 1 2.0415 -4.2374 -1.2458 15 6 1.8545 -2.4946 -2.4985 16 6 2.2796 -3.2636 -3.7229 17 1 2.8638 -4.1658 -3.6181 18 6 1.9225 -2.8154 -4.9769 19 7 1.2114 -1.7164 -5.1046 20 14 2.4488 -3.7689 -6.4945 21 1 3.2352 -4.9595 -6.0831 22 1 1.2452 -4.2058 -7.2467 23 1 3.2849 -2.8991 -7.3604 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3634 -0.8895 -0.5145 27 1 4.4099 1.3411 -0.0011 28 1 4.4776 -1.2832 0.0105 29 1 1.9844 -2.6910 2.1399 30 1 2.0298 -4.2335 1.2525 31 1 4.2309 -2.1190 1.2598 32 1 4.2673 -3.6581 2.1526 33 1 5.5194 -3.8362 0.0193 34 1 4.0938 -4.9024 0.0144 35 1 4.2876 -3.6658 -2.1259 36 1 4.2429 -2.1232 -1.2387 37 1 0.7664 -2.4451 -2.4602 38 1 2.2627 -1.4850 -2.5437 39 1 0.9599 -1.4013 -5.9868 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:12 Heat of formation + Delta-G solvation = 50.293831 kcal Electronic energy + Delta-G solvation = -19248.468462 eV Core-core repulsion = 16577.658020 eV Total energy + Delta-G solvation = -2670.810443 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95765 -38.26598 -33.50747 -32.80537 -31.23808 -31.18538 -29.47909 -26.82100 -26.28483 -23.39636 -22.78097 -21.10878 -20.12336 -20.00127 -18.86430 -16.46353 -15.83953 -15.22664 -15.09213 -14.39509 -14.30494 -13.65126 -13.47674 -13.22118 -12.75260 -12.70753 -12.26821 -12.16442 -11.94850 -11.91599 -11.83526 -11.43162 -11.30896 -10.94208 -10.72328 -10.40922 -10.18919 -9.89983 -9.70397 -9.34399 -9.31666 -9.07928 -8.76372 -8.37828 -7.71929 -6.02065 -4.04854 2.62035 3.28049 3.34338 3.36172 3.38750 3.68015 4.42193 4.84333 4.94143 4.96155 5.04300 5.26786 5.33053 5.42021 5.54408 5.56233 5.69700 5.73376 5.79265 5.84459 5.87266 5.91651 6.06336 6.11359 6.20915 6.25034 6.34418 6.39849 6.45202 6.81802 6.89882 6.94737 7.02652 7.31346 7.58418 7.72827 7.80829 7.95793 8.36679 8.66402 9.01136 9.59074 11.08829 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.008281 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.716866 B = 3380.484169 C = 4049.000871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.205 3.795 3 N -0.500 5.500 4 C -0.045 4.045 5 C -0.056 4.056 6 N -0.425 5.425 7 C 0.132 3.868 8 H 0.095 0.905 9 C -0.124 4.124 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.127 4.127 13 C -0.087 4.087 14 H 0.074 0.926 15 C 0.031 3.969 16 C -0.518 4.518 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.161 0.839 28 H 0.184 0.816 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.011 0.989 38 H 0.020 0.980 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -2.360 12.767 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 N -0.220 5.220 4 C -0.193 4.193 5 C -0.190 4.190 6 N -0.107 5.107 7 C 0.029 3.971 8 H 0.113 0.887 9 C -0.162 4.162 10 C -0.177 4.177 11 C -0.160 4.160 12 C -0.164 4.164 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.006 4.006 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.178 0.822 28 H 0.200 0.800 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.030 0.970 38 H 0.039 0.961 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.149 -1.598 12.633 12.914 hybrid contribution 0.628 -1.376 -1.083 1.861 sum 2.778 -2.975 11.550 12.246 Atomic orbital electron populations 1.20127 0.85771 1.04256 1.02318 1.23084 0.95428 0.81622 1.05614 1.70136 1.02227 1.28535 1.21053 1.22133 0.94685 0.92842 1.09671 1.22899 0.88230 0.96213 1.11614 1.45305 1.06018 1.07002 1.52344 1.21736 0.99737 0.78435 0.97201 0.88741 1.21829 0.96843 1.00854 0.96660 1.21949 0.95174 1.02429 0.98142 1.21640 0.99634 0.99669 0.95105 1.21918 0.95809 1.01688 0.96970 1.21551 0.95513 0.99383 0.94184 0.90816 1.19096 0.95671 0.95884 0.89934 1.21190 1.33834 1.09662 0.90912 0.92610 1.25014 0.95231 0.95022 0.99084 1.69981 1.37756 1.21971 1.23220 0.86594 0.78376 0.80020 0.83354 1.19802 1.21058 1.21054 0.91088 0.89553 0.90649 0.82195 0.79954 0.92067 0.90353 0.90189 0.92411 0.92484 0.92304 0.90660 0.90795 0.97042 0.96123 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.03 36.01 0.36 -0.63 16 2 C 0.20 3.78 7.90 -155.41 -1.23 2.55 16 3 N -0.50 -9.93 11.25 -10.81 -0.12 -10.05 16 4 C -0.04 -0.81 11.87 -17.81 -0.21 -1.02 16 5 C -0.06 -0.95 7.25 -16.56 -0.12 -1.07 16 6 N -0.43 -7.39 1.93 -106.83 -0.21 -7.59 16 7 C 0.13 2.10 2.80 -67.93 -0.19 1.91 16 8 H 0.09 1.45 6.67 -51.93 -0.35 1.10 16 9 C -0.12 -1.58 5.63 -26.73 -0.15 -1.73 16 10 C -0.14 -1.72 5.57 -26.73 -0.15 -1.87 16 11 C -0.12 -1.65 5.73 -26.73 -0.15 -1.80 16 12 C -0.13 -2.20 4.66 -26.73 -0.12 -2.32 16 13 C -0.09 -1.64 1.96 -90.62 -0.18 -1.82 16 14 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 15 C 0.03 0.77 4.21 -27.88 -0.12 0.65 16 16 C -0.52 -14.11 8.41 -34.44 -0.29 -14.39 16 17 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.12 7.08 -51.93 -0.37 0.76 16 27 H 0.16 2.41 8.06 -52.48 -0.42 1.99 16 28 H 0.18 2.73 4.06 -52.49 -0.21 2.52 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.04 4.25 -51.93 -0.22 0.82 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.45 6.95 -51.93 -0.36 1.09 16 36 H 0.07 1.34 4.25 -51.93 -0.22 1.12 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.02 0.57 7.76 -51.93 -0.40 0.17 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -31.49 296.51 -8.66 -40.15 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.86 Total: 2.50 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.65 Total: -20.00 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.41 Total: -43.61 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.49 -8.66 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.445 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds