Wall clock time and date at job start Mon Mar 30 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30505 * 125.65167 * 2 1 4 4 C 1.34128 * 109.25416 * 180.02562 * 3 2 1 5 5 C 1.34664 * 108.02515 * 359.72906 * 4 3 2 6 6 N 1.35045 * 125.65238 * 180.02562 * 2 1 3 7 7 C 1.46504 * 126.39270 * 359.96328 * 6 2 1 8 8 H 1.08993 * 109.47360 * 0.32206 * 7 6 2 9 9 C 1.52999 * 109.47256 * 240.32055 * 7 6 2 10 10 C 1.53003 * 109.46909 * 300.00033 * 9 7 6 11 11 C 1.52990 * 109.47389 * 299.99927 * 10 9 7 12 12 C 1.53008 * 109.47231 * 60.00110 * 11 10 9 13 13 C 1.52993 * 109.46681 * 299.99841 * 12 11 10 14 14 H 1.08993 * 109.47767 * 300.00053 * 13 12 11 15 15 C 1.53002 * 109.47105 * 179.97438 * 13 12 11 16 16 C 1.50701 * 109.46719 * 65.00061 * 15 13 12 17 17 H 1.07991 * 120.00526 * 0.02562 * 16 15 13 18 18 C 1.37882 * 120.00081 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00240 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47266 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47411 * 120.00236 * 20 18 16 23 23 H 1.48502 * 109.47286 * 239.99882 * 20 18 16 24 24 H 1.09003 * 109.46939 * 269.96250 * 1 2 3 25 25 H 1.09002 * 109.46873 * 29.95418 * 1 2 3 26 26 H 1.08994 * 109.47383 * 149.95617 * 1 2 3 27 27 H 1.08008 * 125.98438 * 179.97438 * 4 3 2 28 28 H 1.07995 * 126.59586 * 180.28095 * 5 4 3 29 29 H 1.08996 * 109.47355 * 59.99822 * 9 7 6 30 30 H 1.09000 * 109.47472 * 180.02562 * 9 7 6 31 31 H 1.09003 * 109.47282 * 60.00433 * 10 9 7 32 32 H 1.08998 * 109.46908 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.47137 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47627 * 300.00055 * 11 10 9 35 35 H 1.08997 * 109.46652 * 180.02562 * 12 11 10 36 36 H 1.08993 * 109.46583 * 60.00101 * 12 11 10 37 37 H 1.08994 * 109.47753 * 185.00312 * 15 13 12 38 38 H 1.09001 * 109.47149 * 305.00327 * 15 13 12 39 39 H 0.96998 * 119.99589 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5926 -0.6643 0.0051 6 7 2.2941 -1.0973 -0.0005 7 6 1.8425 -2.4910 -0.0004 8 1 0.7530 -2.5199 -0.0056 9 6 2.3654 -3.1965 1.2526 10 6 3.8948 -3.1560 1.2598 11 6 4.4298 -3.8655 0.0144 12 6 3.9069 -3.1600 -1.2386 13 6 2.3775 -3.2006 -1.2459 14 1 2.0415 -4.2374 -1.2458 15 6 1.8545 -2.4946 -2.4985 16 6 2.2796 -3.2636 -3.7229 17 1 2.8638 -4.1658 -3.6181 18 6 1.9225 -2.8154 -4.9769 19 7 1.2114 -1.7164 -5.1046 20 14 2.4488 -3.7689 -6.4945 21 1 3.2352 -4.9595 -6.0831 22 1 1.2452 -4.2058 -7.2467 23 1 3.2849 -2.8991 -7.3604 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3634 -0.8895 -0.5145 27 1 4.4099 1.3411 -0.0011 28 1 4.4776 -1.2832 0.0105 29 1 1.9844 -2.6910 2.1399 30 1 2.0298 -4.2335 1.2525 31 1 4.2309 -2.1190 1.2598 32 1 4.2673 -3.6581 2.1526 33 1 5.5194 -3.8362 0.0193 34 1 4.0938 -4.9024 0.0144 35 1 4.2876 -3.6658 -2.1259 36 1 4.2429 -2.1232 -1.2387 37 1 0.7664 -2.4451 -2.4602 38 1 2.2627 -1.4850 -2.5437 39 1 0.9599 -1.4013 -5.9868 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:12 Heat of formation + Delta-G solvation = 33.247584 kcal Electronic energy + Delta-G solvation = -19249.207643 eV Core-core repulsion = 16577.658020 eV Total energy + Delta-G solvation = -2671.549624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.30227 -39.58629 -35.42034 -34.11639 -32.96725 -32.46967 -30.74144 -28.57278 -27.63998 -25.19388 -24.01917 -22.43329 -21.70068 -21.26529 -20.18650 -18.53354 -17.13444 -16.70978 -16.66814 -15.99211 -15.64403 -14.92583 -14.73263 -14.56898 -14.39719 -14.06206 -13.84079 -13.62970 -13.32874 -13.20997 -13.09177 -12.94137 -12.83034 -12.54287 -12.49889 -12.00894 -11.75485 -11.42680 -11.12546 -10.98839 -10.79632 -10.68209 -10.55954 -10.20815 -9.07145 -8.20165 -6.30130 1.26535 1.35763 1.36932 1.48828 2.04595 2.28264 2.38121 3.13465 3.63351 3.70503 3.82069 3.86609 4.01824 4.21608 4.29411 4.38771 4.45098 4.56110 4.59673 4.61983 4.71621 4.73933 4.85085 4.95210 5.01810 5.04715 5.12153 5.19538 5.24265 5.39633 5.44971 5.48706 5.56006 5.60378 5.75406 5.84232 5.98252 6.23541 6.45517 6.86929 7.28121 7.38726 8.91285 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.008281 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.716866 B = 3380.484169 C = 4049.000871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.183 3.817 3 N -0.533 5.533 4 C -0.068 4.068 5 C -0.053 4.053 6 N -0.427 5.427 7 C 0.131 3.869 8 H 0.097 0.903 9 C -0.116 4.116 10 C -0.136 4.136 11 C -0.113 4.113 12 C -0.124 4.124 13 C -0.080 4.080 14 H 0.080 0.920 15 C 0.044 3.956 16 C -0.527 4.527 17 H 0.063 0.937 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.958 3.042 21 H -0.259 1.259 22 H -0.280 1.280 23 H -0.284 1.284 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.180 0.820 28 H 0.204 0.796 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.062 0.938 37 H -0.018 1.018 38 H -0.020 1.020 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 -4.356 14.176 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 N -0.254 5.254 4 C -0.216 4.216 5 C -0.187 4.187 6 N -0.108 5.108 7 C 0.028 3.972 8 H 0.115 0.885 9 C -0.154 4.154 10 C -0.173 4.173 11 C -0.150 4.150 12 C -0.161 4.161 13 C -0.099 4.099 14 H 0.098 0.902 15 C 0.007 3.993 16 C -0.565 4.565 17 H 0.081 0.919 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.783 3.217 21 H -0.182 1.182 22 H -0.205 1.205 23 H -0.211 1.211 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.197 0.803 28 H 0.220 0.780 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.001 0.999 38 H -0.002 1.002 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.163 -3.615 14.057 14.854 hybrid contribution 0.309 -0.727 -1.552 1.742 sum 3.472 -4.342 12.504 13.684 Atomic orbital electron populations 1.20211 0.84065 1.03760 1.04193 1.23674 0.96739 0.81857 1.05678 1.70104 1.03313 1.29683 1.22268 1.22613 0.94819 0.93930 1.10218 1.23264 0.88727 0.96197 1.10476 1.45437 1.06097 1.07341 1.51935 1.21813 1.00044 0.77767 0.97528 0.88526 1.21830 0.97219 1.01511 0.94844 1.21929 0.94649 1.02157 0.98583 1.21560 1.00658 0.99630 0.93162 1.21837 0.94501 1.01305 0.98455 1.21381 0.96697 0.99114 0.92737 0.90164 1.18875 0.93627 0.94174 0.92612 1.21641 1.33122 1.09811 0.91947 0.91890 1.25943 0.95352 0.95969 1.02660 1.70132 1.39395 1.23890 1.23903 0.85503 0.78110 0.78898 0.79187 1.18242 1.20539 1.21058 0.87964 0.90037 0.91070 0.80262 0.78001 0.90768 0.88383 0.90937 0.89538 0.90711 0.91283 0.93117 0.91990 0.99939 1.00171 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.94 10.03 71.24 0.71 -1.22 16 2 C 0.18 6.83 7.90 138.13 1.09 7.92 16 3 N -0.53 -21.56 11.25 -188.13 -2.12 -23.68 16 4 C -0.07 -2.46 11.87 83.52 0.99 -1.47 16 5 C -0.05 -1.78 7.25 83.08 0.60 -1.17 16 6 N -0.43 -14.69 1.93 -491.90 -0.95 -15.64 16 7 C 0.13 4.00 2.80 44.99 0.13 4.13 16 8 H 0.10 2.89 6.67 -2.39 -0.02 2.87 16 9 C -0.12 -2.56 5.63 30.59 0.17 -2.38 16 10 C -0.14 -2.81 5.57 30.59 0.17 -2.64 16 11 C -0.11 -2.64 5.73 30.59 0.18 -2.46 16 12 C -0.12 -4.15 4.66 30.59 0.14 -4.01 16 13 C -0.08 -2.98 1.96 -10.79 -0.02 -3.00 16 14 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 15 C 0.04 2.25 4.21 29.85 0.13 2.38 16 16 C -0.53 -29.15 8.41 25.60 0.22 -28.93 16 17 H 0.06 3.32 7.06 -2.92 -0.02 3.30 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 19 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 20 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.07 2.17 7.08 -2.39 -0.02 2.16 16 27 H 0.18 5.39 8.06 -2.91 -0.02 5.37 16 28 H 0.20 5.76 4.06 -2.91 -0.01 5.75 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.64 4.25 -2.39 -0.01 1.63 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.93 6.95 -2.39 -0.02 1.91 16 36 H 0.06 2.22 4.25 -2.39 -0.01 2.21 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H -0.02 -1.19 7.76 -2.39 -0.02 -1.21 16 39 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -70.11 296.51 5.24 -64.87 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.03 Total: 17.81 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 4.97 Total: -32.50 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -2.78 Total: -96.67 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -70.11 5.24 -64.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.116 kcal (2) G-P(sol) polarization free energy of solvation -70.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds