Wall clock time and date at job start Mon Mar 30 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30504 * 125.65078 * 2 1 4 4 C 1.34126 * 109.25735 * 180.29313 * 3 2 1 5 5 C 1.34672 * 108.01904 * 359.72690 * 4 3 2 6 6 N 1.35044 * 125.65174 * 179.82767 * 2 1 3 7 7 C 1.46500 * 126.39635 * 359.97219 * 6 2 1 8 8 H 1.09000 * 109.47175 * 359.71501 * 7 6 2 9 9 C 1.52997 * 109.47204 * 119.71607 * 7 6 2 10 10 C 1.52999 * 109.47592 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46626 * 300.00035 * 10 9 7 12 12 C 1.52997 * 109.47164 * 59.99702 * 11 10 9 13 13 C 1.52996 * 109.46993 * 239.71631 * 7 6 2 14 14 H 1.08996 * 109.47134 * 299.99460 * 13 7 6 15 15 C 1.52995 * 109.47577 * 60.00300 * 13 7 6 16 16 C 1.50696 * 109.47678 * 185.00092 * 15 13 7 17 17 H 1.08006 * 119.99707 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00210 * 179.97438 * 16 15 13 19 19 N 1.31509 * 119.99975 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99628 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47347 * 60.00494 * 20 18 16 22 22 H 1.48505 * 109.46642 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47322 * 299.99785 * 20 18 16 24 24 H 1.09003 * 109.46883 * 270.17271 * 1 2 3 25 25 H 1.08999 * 109.47575 * 30.17215 * 1 2 3 26 26 H 1.09003 * 109.47146 * 150.17736 * 1 2 3 27 27 H 1.07997 * 125.98986 * 179.72081 * 4 3 2 28 28 H 1.08002 * 126.59193 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47140 * 59.99873 * 9 7 6 30 30 H 1.09002 * 109.47045 * 299.99966 * 9 7 6 31 31 H 1.08993 * 109.47839 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47160 * 59.99666 * 10 9 7 33 33 H 1.09001 * 109.46998 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 35 35 H 1.09000 * 109.47140 * 60.00051 * 12 11 10 36 36 H 1.09001 * 109.47230 * 179.97438 * 12 11 10 37 37 H 1.09007 * 109.46399 * 304.99928 * 15 13 7 38 38 H 1.08996 * 109.47584 * 64.99349 * 15 13 7 39 39 H 0.97005 * 119.99928 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5925 -0.6643 -0.0045 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0081 8 1 0.7529 -2.5199 0.0137 9 6 2.3650 -3.2007 -1.2426 10 6 1.8930 -4.6560 -1.2380 11 6 2.4279 -5.3617 0.0098 12 6 1.9053 -4.6520 1.2605 13 6 2.3778 -3.1962 1.2558 14 1 3.4674 -3.1674 1.2501 15 6 1.8553 -2.4867 2.5065 16 6 2.4791 -3.1036 3.7318 17 1 3.1781 -3.9205 3.6287 18 6 2.1575 -2.6252 4.9843 19 7 1.3068 -1.6302 5.1097 20 14 2.9303 -3.3906 6.5030 21 1 4.4067 -3.2477 6.4327 22 1 2.4240 -2.7009 7.7169 23 1 2.5748 -4.8309 6.5670 24 1 -0.3633 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4097 1.3411 -0.0123 28 1 4.4776 -1.2832 -0.0088 29 1 3.4546 -3.1718 -1.2482 30 1 1.9837 -2.6982 -2.1315 31 1 2.2656 -5.1618 -2.1287 32 1 0.8034 -4.6846 -1.2326 33 1 2.0912 -6.3984 0.0134 34 1 3.5175 -5.3331 0.0044 35 1 0.8157 -4.6805 1.2659 36 1 2.2860 -5.1549 2.1494 37 1 2.1155 -1.4292 2.4596 38 1 0.7717 -2.5922 2.5582 39 1 1.0802 -1.2939 5.9909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:15 Heat of formation + Delta-G solvation = 27.679574 kcal Electronic energy + Delta-G solvation = -18924.415112 eV Core-core repulsion = 16252.624041 eV Total energy + Delta-G solvation = -2671.791071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.68277 -38.32063 -33.48676 -33.09284 -31.27618 -31.23120 -29.01136 -26.76891 -26.29534 -23.42673 -22.69048 -21.00785 -20.49849 -19.29515 -18.81887 -16.85680 -16.24698 -14.93458 -14.83165 -14.32547 -14.20066 -13.88665 -13.60668 -13.18698 -12.79615 -12.72832 -12.33736 -12.17488 -12.00985 -11.96284 -11.74990 -11.45111 -11.01723 -10.90262 -10.75167 -10.58844 -10.26570 -10.15998 -9.86316 -9.44820 -9.35786 -9.11116 -8.73989 -8.36724 -7.76777 -6.01316 -4.04030 2.63106 3.30451 3.31692 3.36024 3.37261 3.69503 4.42624 4.78639 4.93425 4.96185 5.04883 5.26170 5.33844 5.35764 5.47333 5.56903 5.70651 5.71712 5.77460 5.82820 5.89034 5.91025 6.02375 6.13786 6.20899 6.23979 6.31373 6.37067 6.40706 6.77371 6.85188 6.92846 7.00112 7.31497 7.60630 7.71862 7.80309 7.95710 8.37199 8.65897 9.01126 9.59665 11.09669 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.008697 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.095960 B = 3218.657915 C = 4214.664926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.207 3.793 3 N -0.501 5.501 4 C -0.039 4.039 5 C -0.046 4.046 6 N -0.432 5.432 7 C 0.134 3.866 8 H 0.094 0.906 9 C -0.124 4.124 10 C -0.112 4.112 11 C -0.125 4.125 12 C -0.102 4.102 13 C -0.086 4.086 14 H 0.063 0.937 15 C 0.031 3.969 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.020 0.980 38 H 0.013 0.987 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -4.082 -12.748 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.056 4.056 3 N -0.220 5.220 4 C -0.188 4.188 5 C -0.180 4.180 6 N -0.113 5.113 7 C 0.031 3.969 8 H 0.112 0.888 9 C -0.162 4.162 10 C -0.151 4.151 11 C -0.162 4.162 12 C -0.140 4.140 13 C -0.105 4.105 14 H 0.081 0.919 15 C -0.006 4.006 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.179 0.821 28 H 0.182 0.818 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.031 0.969 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.055 -3.300 -12.605 13.030 hybrid contribution 0.901 -1.188 1.082 1.843 sum 0.846 -4.489 -11.523 12.396 Atomic orbital electron populations 1.20141 0.85746 1.02802 1.03845 1.23083 0.95432 0.81605 1.05440 1.70139 1.02217 1.28504 1.21186 1.22073 0.94650 0.92710 1.09333 1.22429 0.87453 0.96413 1.11700 1.45388 1.06156 1.07174 1.52571 1.21730 1.00135 0.77907 0.97113 0.88781 1.21880 1.01568 0.96056 0.96729 1.21475 1.00877 0.94382 0.98322 1.21663 1.00615 0.98838 0.95093 1.21501 1.00415 0.94966 0.97147 1.21577 1.00057 0.94673 0.94180 0.91852 1.19098 0.95959 0.95662 0.89896 1.21101 1.26009 1.17590 0.90970 0.92766 1.24997 0.95203 0.95007 0.99047 1.69951 1.33772 1.25747 1.23513 0.86711 0.79677 0.79328 0.82600 1.20311 1.21290 1.20293 0.89795 0.89880 0.91449 0.82110 0.81840 0.91414 0.92048 0.92016 0.91876 0.92309 0.92259 0.92442 0.90332 0.96167 0.96893 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.02 36.00 0.36 -0.65 16 2 C 0.21 3.88 7.90 -155.41 -1.23 2.65 16 3 N -0.50 -10.11 11.25 -10.82 -0.12 -10.23 16 4 C -0.04 -0.72 11.87 -17.81 -0.21 -0.93 16 5 C -0.05 -0.80 10.60 -16.56 -0.18 -0.98 16 6 N -0.43 -7.71 1.75 -106.83 -0.19 -7.90 16 7 C 0.13 2.16 2.24 -67.93 -0.15 2.01 16 8 H 0.09 1.48 6.67 -51.93 -0.35 1.14 16 9 C -0.12 -1.60 5.26 -26.73 -0.14 -1.74 16 10 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 11 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 12 C -0.10 -1.71 5.01 -26.71 -0.13 -1.84 16 13 C -0.09 -1.62 1.59 -90.60 -0.14 -1.77 16 14 H 0.06 1.25 7.95 -51.93 -0.41 0.84 16 15 C 0.03 0.77 4.36 -27.89 -0.12 0.64 16 16 C -0.52 -14.18 8.41 -34.44 -0.29 -14.47 16 17 H 0.05 1.43 7.06 -52.48 -0.37 1.06 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.07 0.86 7.08 -51.93 -0.37 0.49 16 27 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16 29 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.46 6.95 -51.93 -0.36 1.10 16 37 H 0.02 0.56 7.45 -51.92 -0.39 0.18 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 310.55 15.07 4.68 4.68 Total: -1.00 -31.67 310.55 -9.01 -40.68 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.44 Total: 0.96 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.65 Total: -18.72 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.43 Total: -44.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.67 -9.01 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.355 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds