Wall clock time and date at job start Mon Mar 30 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30493 * 125.65006 * 2 1 4 4 C 1.34125 * 109.25714 * 180.02562 * 3 2 1 5 5 C 1.34669 * 108.02039 * 359.73695 * 4 3 2 6 6 N 1.35045 * 125.64884 * 180.02562 * 2 1 3 7 7 C 1.46501 * 126.39853 * 359.95702 * 6 2 1 8 8 H 1.08997 * 109.47098 * 0.30771 * 7 6 2 9 9 C 1.52995 * 109.46966 * 120.31399 * 7 6 2 10 10 C 1.52992 * 109.47518 * 59.99622 * 9 7 6 11 11 C 1.53001 * 109.46993 * 60.00223 * 10 9 7 12 12 C 1.52998 * 109.47189 * 299.99835 * 11 10 9 13 13 C 1.53001 * 109.47139 * 240.30927 * 7 6 2 14 14 H 1.08992 * 109.47575 * 179.97438 * 13 7 6 15 15 C 1.53007 * 109.47085 * 59.99970 * 13 7 6 16 16 C 1.50695 * 109.47216 * 175.00111 * 15 13 7 17 17 H 1.08003 * 120.00097 * 359.97438 * 16 15 13 18 18 C 1.37879 * 120.00289 * 180.02562 * 16 15 13 19 19 N 1.31508 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46967 * 179.97438 * 20 18 16 22 22 H 1.48492 * 109.47394 * 299.99940 * 20 18 16 23 23 H 1.48496 * 109.46818 * 60.00234 * 20 18 16 24 24 H 1.08999 * 109.46902 * 269.95184 * 1 2 3 25 25 H 1.08999 * 109.47297 * 29.95585 * 1 2 3 26 26 H 1.09000 * 109.47107 * 149.95457 * 1 2 3 27 27 H 1.08001 * 125.98890 * 180.02562 * 4 3 2 28 28 H 1.08003 * 126.59142 * 180.27540 * 5 4 3 29 29 H 1.09009 * 109.46740 * 299.99711 * 9 7 6 30 30 H 1.09001 * 109.47122 * 180.02562 * 9 7 6 31 31 H 1.09001 * 109.47493 * 300.00469 * 10 9 7 32 32 H 1.09001 * 109.47307 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.46999 * 179.97438 * 11 10 9 34 34 H 1.09005 * 109.47283 * 59.99835 * 11 10 9 35 35 H 1.08997 * 109.47180 * 300.00477 * 12 11 10 36 36 H 1.08999 * 109.47151 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.46696 * 54.99914 * 15 13 7 38 38 H 1.08995 * 109.46913 * 295.00179 * 15 13 7 39 39 H 0.96999 * 120.00464 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0006 5 6 3.5926 -0.6643 0.0049 6 7 2.2941 -1.0974 -0.0005 7 6 1.8426 -2.4911 -0.0002 8 1 0.7530 -2.5199 -0.0051 9 6 2.3772 -3.2006 -1.2458 10 6 3.9066 -3.1600 -1.2390 11 6 4.4299 -3.8654 0.0138 12 6 3.8953 -3.1559 1.2595 13 6 2.3658 -3.1965 1.2526 14 1 2.0295 -4.2332 1.2531 15 6 1.8312 -2.4869 2.4983 16 6 2.2448 -3.2523 3.7288 17 1 2.8301 -4.1548 3.6320 18 6 1.8752 -2.8010 4.9781 19 7 1.1622 -1.7023 5.0959 20 14 2.3873 -3.7502 6.5033 21 1 1.8686 -3.0614 7.7123 22 1 1.8318 -5.1258 6.4400 23 1 3.8693 -3.8173 6.5701 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3633 -0.8896 -0.5145 27 1 4.4098 1.3411 -0.0003 28 1 4.4777 -1.2832 0.0102 29 1 2.0044 -2.6980 -2.1384 30 1 2.0409 -4.2374 -1.2459 31 1 4.2426 -2.1231 -1.2391 32 1 4.2875 -3.6651 -2.1266 33 1 5.5195 -3.8369 0.0185 34 1 4.0939 -4.9024 0.0141 35 1 4.2312 -2.1190 1.2593 36 1 4.2685 -3.6582 2.1520 37 1 0.7434 -2.4376 2.4495 38 1 2.2390 -1.4771 2.5443 39 1 0.8965 -1.2092 4.3039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:19 Heat of formation + Delta-G solvation = 46.554668 kcal Electronic energy + Delta-G solvation = -19298.306541 eV Core-core repulsion = 16627.333956 eV Total energy + Delta-G solvation = -2670.972585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.05777 -38.36249 -33.81342 -32.90057 -31.28998 -31.17593 -29.55267 -26.64628 -26.18618 -23.31839 -22.83745 -21.22766 -20.37037 -20.10493 -18.95796 -16.78081 -15.93851 -15.51603 -15.06443 -14.44201 -13.76314 -13.73040 -13.55225 -13.29357 -13.07103 -12.85272 -12.47104 -12.28721 -12.07360 -12.00079 -11.78793 -11.42359 -11.38482 -10.93183 -10.70481 -10.39196 -10.14024 -9.96016 -9.81385 -9.46783 -9.40729 -9.02588 -8.50808 -8.33754 -7.81258 -6.36130 -4.05985 2.52391 3.24294 3.41391 3.43183 3.58908 3.62001 4.51880 4.75856 4.85671 4.86443 4.95745 5.16768 5.33039 5.39647 5.44975 5.48873 5.56420 5.65816 5.72643 5.79091 5.81489 5.82591 5.97683 6.05018 6.11323 6.15875 6.25088 6.31594 6.36050 6.72317 6.78033 6.83943 6.93443 7.21896 7.29170 7.47439 7.69650 8.17355 8.44067 8.56718 8.86685 9.66068 11.03828 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.008331 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.359923 B = 3360.034886 C = 4028.074167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.202 3.798 3 N -0.498 5.498 4 C -0.044 4.044 5 C -0.056 4.056 6 N -0.427 5.427 7 C 0.131 3.869 8 H 0.094 0.906 9 C -0.124 4.124 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.126 4.126 13 C -0.080 4.080 14 H 0.075 0.925 15 C 0.019 3.981 16 C -0.599 4.599 17 H 0.049 0.951 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 1.066 2.934 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.288 1.288 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.162 0.838 28 H 0.185 0.815 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.002 0.998 38 H 0.011 0.989 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -2.723 -13.045 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.060 4.060 3 N -0.218 5.218 4 C -0.193 4.193 5 C -0.189 4.189 6 N -0.108 5.108 7 C 0.028 3.972 8 H 0.112 0.888 9 C -0.162 4.162 10 C -0.177 4.177 11 C -0.160 4.160 12 C -0.163 4.163 13 C -0.099 4.099 14 H 0.093 0.907 15 C -0.018 4.018 16 C -0.637 4.637 17 H 0.067 0.933 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.894 3.106 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.179 0.821 28 H 0.201 0.799 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.563 -2.081 -11.391 11.860 hybrid contribution 0.501 -0.956 -1.572 1.907 sum 3.065 -3.037 -12.963 13.662 Atomic orbital electron populations 1.20137 0.85733 1.02965 1.03678 1.23109 0.95457 0.81658 1.05808 1.70135 1.02234 1.28463 1.20985 1.22159 0.94695 0.92833 1.09591 1.22929 0.88228 0.96261 1.11519 1.45321 1.06058 1.06988 1.52451 1.21754 0.99661 0.78458 0.97357 0.88812 1.21826 0.96891 1.00854 0.96614 1.21950 0.95106 1.02452 0.98179 1.21637 0.99740 0.99690 0.94966 1.21904 0.95528 1.01661 0.97216 1.21406 0.95697 0.99324 0.93427 0.90709 1.19207 0.94888 0.95830 0.91884 1.21957 1.37769 1.11725 0.92240 0.93312 1.25799 0.94717 0.96992 1.01386 1.70769 1.34684 1.15628 1.33492 0.83583 0.76024 0.75154 0.75792 1.20772 1.21525 1.21508 0.90036 0.89765 0.91391 0.82068 0.79884 0.91990 0.90303 0.90194 0.92280 0.92361 0.92253 0.90878 0.90556 0.98003 0.97086 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.03 36.01 0.36 -0.62 16 2 C 0.20 3.67 7.90 -155.42 -1.23 2.45 16 3 N -0.50 -9.77 11.25 -10.81 -0.12 -9.89 16 4 C -0.04 -0.79 11.87 -17.81 -0.21 -1.00 16 5 C -0.06 -0.95 7.25 -16.56 -0.12 -1.07 16 6 N -0.43 -7.34 1.94 -106.83 -0.21 -7.55 16 7 C 0.13 2.08 2.80 -67.93 -0.19 1.89 16 8 H 0.09 1.44 6.67 -51.93 -0.35 1.09 16 9 C -0.12 -1.58 5.63 -26.74 -0.15 -1.73 16 10 C -0.14 -1.72 5.57 -26.73 -0.15 -1.87 16 11 C -0.12 -1.66 5.73 -26.73 -0.15 -1.81 16 12 C -0.13 -2.21 4.66 -26.73 -0.12 -2.34 16 13 C -0.08 -1.51 1.96 -90.61 -0.18 -1.69 16 14 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 15 C 0.02 0.47 3.53 -27.88 -0.10 0.37 16 16 C -0.60 -16.53 8.41 -34.44 -0.29 -16.82 16 17 H 0.05 1.32 7.06 -52.48 -0.37 0.95 16 18 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 19 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16 20 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 0.84 7.08 -51.93 -0.37 0.48 16 27 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.18 2.74 4.06 -52.48 -0.21 2.52 16 29 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.03 4.25 -51.93 -0.22 0.81 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.33 4.25 -51.93 -0.22 1.11 16 36 H 0.08 1.51 6.95 -51.93 -0.36 1.14 16 37 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 38 H 0.01 0.30 7.63 -51.93 -0.40 -0.10 16 39 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -32.09 295.21 -8.64 -40.73 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.81 Total: 3.24 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -2.63 Total: -23.90 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.43 Total: -44.75 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.09 -8.64 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.283 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds