Wall clock time and date at job start Mon Mar 30 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30493 * 125.65006 * 2 1 4 4 C 1.34125 * 109.25714 * 180.02562 * 3 2 1 5 5 C 1.34669 * 108.02039 * 359.73695 * 4 3 2 6 6 N 1.35045 * 125.64884 * 180.02562 * 2 1 3 7 7 C 1.46501 * 126.39853 * 359.95702 * 6 2 1 8 8 H 1.08997 * 109.47098 * 0.30771 * 7 6 2 9 9 C 1.52995 * 109.46966 * 120.31399 * 7 6 2 10 10 C 1.52992 * 109.47518 * 59.99622 * 9 7 6 11 11 C 1.53001 * 109.46993 * 60.00223 * 10 9 7 12 12 C 1.52998 * 109.47189 * 299.99835 * 11 10 9 13 13 C 1.53001 * 109.47139 * 240.30927 * 7 6 2 14 14 H 1.08992 * 109.47575 * 179.97438 * 13 7 6 15 15 C 1.53007 * 109.47085 * 59.99970 * 13 7 6 16 16 C 1.50695 * 109.47216 * 175.00111 * 15 13 7 17 17 H 1.08003 * 120.00097 * 359.97438 * 16 15 13 18 18 C 1.37879 * 120.00289 * 180.02562 * 16 15 13 19 19 N 1.31508 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46967 * 179.97438 * 20 18 16 22 22 H 1.48492 * 109.47394 * 299.99940 * 20 18 16 23 23 H 1.48496 * 109.46818 * 60.00234 * 20 18 16 24 24 H 1.08999 * 109.46902 * 269.95184 * 1 2 3 25 25 H 1.08999 * 109.47297 * 29.95585 * 1 2 3 26 26 H 1.09000 * 109.47107 * 149.95457 * 1 2 3 27 27 H 1.08001 * 125.98890 * 180.02562 * 4 3 2 28 28 H 1.08003 * 126.59142 * 180.27540 * 5 4 3 29 29 H 1.09009 * 109.46740 * 299.99711 * 9 7 6 30 30 H 1.09001 * 109.47122 * 180.02562 * 9 7 6 31 31 H 1.09001 * 109.47493 * 300.00469 * 10 9 7 32 32 H 1.09001 * 109.47307 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.46999 * 179.97438 * 11 10 9 34 34 H 1.09005 * 109.47283 * 59.99835 * 11 10 9 35 35 H 1.08997 * 109.47180 * 300.00477 * 12 11 10 36 36 H 1.08999 * 109.47151 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.46696 * 54.99914 * 15 13 7 38 38 H 1.08995 * 109.46913 * 295.00179 * 15 13 7 39 39 H 0.96999 * 120.00464 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0006 5 6 3.5926 -0.6643 0.0049 6 7 2.2941 -1.0974 -0.0005 7 6 1.8426 -2.4911 -0.0002 8 1 0.7530 -2.5199 -0.0051 9 6 2.3772 -3.2006 -1.2458 10 6 3.9066 -3.1600 -1.2390 11 6 4.4299 -3.8654 0.0138 12 6 3.8953 -3.1559 1.2595 13 6 2.3658 -3.1965 1.2526 14 1 2.0295 -4.2332 1.2531 15 6 1.8312 -2.4869 2.4983 16 6 2.2448 -3.2523 3.7288 17 1 2.8301 -4.1548 3.6320 18 6 1.8752 -2.8010 4.9781 19 7 1.1622 -1.7023 5.0959 20 14 2.3873 -3.7502 6.5033 21 1 1.8686 -3.0614 7.7123 22 1 1.8318 -5.1258 6.4400 23 1 3.8693 -3.8173 6.5701 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3633 -0.8896 -0.5145 27 1 4.4098 1.3411 -0.0003 28 1 4.4777 -1.2832 0.0102 29 1 2.0044 -2.6980 -2.1384 30 1 2.0409 -4.2374 -1.2459 31 1 4.2426 -2.1231 -1.2391 32 1 4.2875 -3.6651 -2.1266 33 1 5.5195 -3.8369 0.0185 34 1 4.0939 -4.9024 0.0141 35 1 4.2312 -2.1190 1.2593 36 1 4.2685 -3.6582 2.1520 37 1 0.7434 -2.4376 2.4495 38 1 2.2390 -1.4771 2.5443 39 1 0.8965 -1.2092 4.3039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:19 Heat of formation + Delta-G solvation = 28.948391 kcal Electronic energy + Delta-G solvation = -19299.070007 eV Core-core repulsion = 16627.333956 eV Total energy + Delta-G solvation = -2671.736051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.39527 -39.69331 -35.77788 -34.19958 -32.88327 -32.55289 -30.81767 -28.25178 -27.66973 -25.22313 -24.09010 -22.57513 -21.93832 -21.35654 -20.27006 -18.88301 -17.22755 -16.96051 -16.36363 -15.73521 -15.64953 -15.02495 -14.93894 -14.75277 -14.60056 -14.18622 -13.98703 -13.59248 -13.52043 -13.24324 -13.08330 -12.97691 -12.82318 -12.54660 -12.32462 -11.99792 -11.87818 -11.34265 -11.20339 -10.95121 -10.76219 -10.72568 -10.55541 -10.26059 -9.16093 -8.68003 -6.38233 1.17301 1.48327 1.56709 1.75167 1.95147 2.20080 2.54208 3.15898 3.52903 3.61974 3.72605 3.77756 3.93145 4.12860 4.19052 4.30061 4.37910 4.46517 4.48842 4.53676 4.62100 4.64602 4.75597 4.86841 4.91284 4.95622 5.01656 5.09368 5.13256 5.24661 5.32217 5.40585 5.43086 5.50766 5.60522 5.89818 5.99481 6.18332 6.36363 6.56930 7.19668 7.43605 8.71496 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.008331 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.359923 B = 3360.034886 C = 4028.074167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.181 3.819 3 N -0.531 5.531 4 C -0.067 4.067 5 C -0.054 4.054 6 N -0.428 5.428 7 C 0.130 3.870 8 H 0.097 0.903 9 C -0.117 4.117 10 C -0.136 4.136 11 C -0.112 4.112 12 C -0.123 4.123 13 C -0.073 4.073 14 H 0.079 0.921 15 C 0.029 3.971 16 C -0.604 4.604 17 H 0.055 0.945 18 C -0.043 4.043 19 N -0.940 5.940 20 Si 1.113 2.887 21 H -0.288 1.288 22 H -0.265 1.265 23 H -0.270 1.270 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.182 0.818 28 H 0.204 0.796 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.048 0.952 37 H -0.022 1.022 38 H -0.025 1.025 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -4.772 -14.575 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 N -0.251 5.251 4 C -0.214 4.214 5 C -0.187 4.187 6 N -0.110 5.110 7 C 0.028 3.972 8 H 0.115 0.885 9 C -0.154 4.154 10 C -0.173 4.173 11 C -0.150 4.150 12 C -0.160 4.160 13 C -0.092 4.092 14 H 0.097 0.903 15 C -0.008 4.008 16 C -0.642 4.642 17 H 0.073 0.927 18 C -0.240 4.240 19 N -0.577 5.577 20 Si 0.935 3.065 21 H -0.213 1.213 22 H -0.190 1.190 23 H -0.196 1.196 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.199 0.801 28 H 0.220 0.780 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.067 0.933 37 H -0.004 1.004 38 H -0.007 1.007 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.622 -4.147 -12.953 14.074 hybrid contribution 0.179 -0.297 -1.079 1.133 sum 3.801 -4.444 -14.031 15.201 Atomic orbital electron populations 1.20224 0.83992 1.05001 1.03076 1.23700 0.96768 0.81843 1.05831 1.70108 1.03303 1.29614 1.22101 1.22639 0.94853 0.93881 1.10053 1.23287 0.88724 0.96276 1.10462 1.45453 1.06141 1.07303 1.52058 1.21816 1.00040 0.77838 0.97511 0.88504 1.21834 0.97240 1.01494 0.94866 1.21931 0.94611 1.02204 0.98550 1.21559 1.00750 0.99609 0.93066 1.21825 0.94295 1.01303 0.98598 1.21261 0.96818 0.98947 0.92219 0.90316 1.19031 0.93217 0.94265 0.94238 1.22402 1.36707 1.11747 0.93321 0.92717 1.27369 0.94174 0.97066 1.05357 1.70920 1.37056 1.17194 1.32567 0.82988 0.76794 0.74833 0.71913 1.21346 1.19046 1.19568 0.91812 0.88187 0.88966 0.80120 0.78012 0.90595 0.88375 0.90901 0.89350 0.90568 0.91280 0.92014 0.93280 1.00390 1.00652 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.92 10.03 71.24 0.71 -1.20 16 2 C 0.18 6.64 7.90 138.13 1.09 7.74 16 3 N -0.53 -21.13 11.25 -188.13 -2.12 -23.25 16 4 C -0.07 -2.37 11.87 83.52 0.99 -1.38 16 5 C -0.05 -1.79 7.25 83.09 0.60 -1.19 16 6 N -0.43 -14.54 1.94 -491.91 -0.95 -15.49 16 7 C 0.13 3.96 2.80 44.99 0.13 4.09 16 8 H 0.10 2.86 6.67 -2.39 -0.02 2.84 16 9 C -0.12 -2.55 5.63 30.59 0.17 -2.37 16 10 C -0.14 -2.79 5.57 30.59 0.17 -2.62 16 11 C -0.11 -2.65 5.73 30.59 0.18 -2.47 16 12 C -0.12 -4.17 4.66 30.59 0.14 -4.03 16 13 C -0.07 -2.74 1.96 -10.79 -0.02 -2.76 16 14 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 15 C 0.03 1.50 3.53 29.85 0.11 1.60 16 16 C -0.60 -33.82 8.41 25.60 0.22 -33.60 16 17 H 0.05 2.94 7.06 -2.91 -0.02 2.92 16 18 C -0.04 -2.49 5.46 84.66 0.46 -2.03 16 19 N -0.94 -59.88 13.65 21.45 0.29 -59.59 16 20 Si 1.11 50.76 29.90 68.60 2.05 52.81 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.09 2.21 7.08 -2.39 -0.02 2.19 16 27 H 0.18 5.35 8.06 -2.91 -0.02 5.33 16 28 H 0.20 5.74 4.06 -2.91 -0.01 5.73 16 29 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.64 4.25 -2.39 -0.01 1.63 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.06 2.22 4.25 -2.39 -0.01 2.21 16 36 H 0.05 1.91 6.95 -2.39 -0.02 1.89 16 37 H -0.02 -1.22 8.01 -2.39 -0.02 -1.24 16 38 H -0.02 -1.44 7.63 -2.39 -0.02 -1.46 16 39 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 Total: -1.00 -71.76 295.21 5.36 -66.41 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.13 Total: 19.35 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 4.95 Total: -40.24 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -2.78 Total: -98.33 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -71.76 5.36 -66.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.355 kcal (2) G-P(sol) polarization free energy of solvation -71.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds