Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47480 * 2 1 4 4 C 1.53004 * 109.47097 * 119.99889 * 2 1 3 5 5 C 1.50699 * 109.47359 * 174.99952 * 4 2 1 6 6 N 1.30782 * 125.72295 * 269.93755 * 5 4 2 7 7 C 1.34425 * 109.32142 * 180.08540 * 6 5 4 8 8 C 1.33854 * 107.79883 * 0.02562 * 7 6 5 9 9 N 1.34403 * 125.72201 * 89.99496 * 5 4 2 10 10 C 1.46473 * 128.44901 * 359.82584 * 9 5 4 11 11 C 1.53281 * 108.69957 * 197.33066 * 10 9 5 12 12 C 1.53112 * 109.71292 * 309.25129 * 11 10 9 13 13 C 1.50708 * 128.68415 * 179.97438 * 8 7 6 14 14 H 1.08998 * 109.79006 * 76.14775 * 13 8 7 15 15 C 1.50708 * 109.74363 * 315.45135 * 13 8 7 16 16 H 1.07996 * 120.00077 * 335.52215 * 15 13 8 17 17 C 1.37871 * 119.99646 * 155.79457 * 15 13 8 18 18 N 1.31518 * 119.99792 * 185.67892 * 17 15 13 19 19 Si 1.86799 * 120.00441 * 5.68316 * 17 15 13 20 20 H 1.48492 * 109.47311 * 84.75842 * 19 17 15 21 21 H 1.48503 * 109.47173 * 204.76131 * 19 17 15 22 22 H 1.48500 * 109.46757 * 324.75631 * 19 17 15 23 23 H 1.09001 * 109.47331 * 300.00299 * 1 2 3 24 24 H 1.09003 * 109.47161 * 59.99984 * 1 2 3 25 25 H 1.08995 * 109.47478 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46875 * 239.99463 * 2 1 3 27 27 H 1.09001 * 109.47082 * 59.99549 * 3 2 1 28 28 H 1.08997 * 109.47059 * 179.97438 * 3 2 1 29 29 H 1.09011 * 109.46705 * 299.99920 * 3 2 1 30 30 H 1.09001 * 109.47279 * 54.99460 * 4 2 1 31 31 H 1.09000 * 109.46897 * 294.99727 * 4 2 1 32 32 H 1.07998 * 126.10034 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.59651 * 77.56762 * 10 9 5 34 34 H 1.08999 * 109.60019 * 317.09857 * 10 9 5 35 35 H 1.09000 * 109.42733 * 189.17880 * 11 10 9 36 36 H 1.08994 * 109.42714 * 69.32929 * 11 10 9 37 37 H 1.09005 * 109.50417 * 309.95044 * 12 11 10 38 38 H 1.09001 * 109.49760 * 189.85084 * 12 11 10 39 39 H 0.97005 * 120.00268 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 7 4.2156 -1.8162 0.6573 7 6 5.5320 -1.5765 0.7865 8 6 5.6745 -0.4051 1.4183 9 7 4.4136 0.0715 1.6735 10 6 4.1312 1.3381 2.3528 11 6 5.3970 2.2023 2.3273 12 6 6.5890 1.3874 2.8366 13 6 6.9445 0.3088 1.8039 14 1 7.3881 0.7741 0.9237 15 6 7.9174 -0.6723 2.4058 16 1 7.5546 -1.5805 2.8639 17 6 9.2702 -0.4076 2.3766 18 7 10.1264 -1.3117 2.8000 19 14 9.8869 1.2351 1.7359 20 1 9.8538 2.2375 2.8309 21 1 11.2804 1.0835 1.2455 22 1 9.0169 1.6900 0.6218 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 6.3319 -2.2155 0.4427 33 1 3.8426 1.1427 3.3856 34 1 3.3235 1.8574 1.8371 35 1 5.2539 3.0737 2.9662 36 1 5.5915 2.5302 1.3062 37 1 6.3281 0.9135 3.7829 38 1 7.4445 2.0468 2.9831 39 1 11.0781 -1.1254 2.7799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261015964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = 34.720824 kcal Electronic energy + Delta-G solvation = -18795.145676 eV Core-core repulsion = 16123.659937 eV Total energy + Delta-G solvation = -2671.485739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68331 -36.52394 -36.04448 -33.41602 -31.54324 -29.99413 -28.93654 -27.30975 -25.50566 -25.30292 -22.12223 -21.24353 -20.78275 -19.25650 -18.18220 -16.95432 -16.37064 -15.49771 -14.92209 -14.34084 -14.05543 -13.78972 -13.45165 -13.39531 -13.13397 -12.82035 -12.60817 -12.38976 -12.09089 -11.92853 -11.80315 -11.56943 -11.04034 -10.92558 -10.83076 -10.64595 -10.58756 -10.42907 -9.92853 -9.77187 -9.37722 -9.13835 -8.74788 -8.57444 -7.29196 -6.13065 -4.13088 2.84085 3.21972 3.30142 3.31808 3.42655 3.94314 4.34411 4.72411 4.83052 4.91114 4.93953 5.04066 5.15681 5.27113 5.33967 5.40481 5.51530 5.61604 5.68113 5.73461 5.83600 5.84898 5.92150 5.94580 6.04954 6.09515 6.20825 6.28003 6.34902 6.42769 6.56972 6.68640 6.95254 7.07706 7.32288 7.62494 7.70372 7.99233 8.47023 8.88386 8.95107 9.47153 10.99606 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036523 B = 0.006516 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.453848 B = 4296.174091 C = 4709.523576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.021 4.021 5 C 0.177 3.823 6 N -0.497 5.497 7 C -0.031 4.031 8 C 0.032 3.968 9 N -0.457 5.457 10 C 0.100 3.900 11 C -0.137 4.137 12 C -0.124 4.124 13 C 0.077 3.923 14 H 0.054 0.946 15 C -0.503 4.503 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.894 5.894 19 Si 0.871 3.129 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.263 1.263 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.167 0.833 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.616 8.167 -2.834 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.210 4.210 4 C -0.060 4.060 5 C -0.083 4.083 6 N -0.217 5.217 7 C -0.177 4.177 8 C -0.082 4.082 9 N -0.142 5.142 10 C -0.023 4.023 11 C -0.175 4.175 12 C -0.162 4.162 13 C 0.057 3.943 14 H 0.072 0.928 15 C -0.541 4.541 16 H 0.096 0.904 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.699 3.301 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.188 1.188 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.797 7.539 -3.106 17.777 hybrid contribution 0.940 1.563 0.243 1.840 sum -14.856 9.102 -2.863 17.657 Atomic orbital electron populations 1.21826 0.94978 1.01839 1.01581 1.21111 0.95280 0.96109 0.98609 1.22055 1.01645 0.96076 1.01269 1.19923 0.86188 1.01989 0.97906 1.22662 0.93557 0.88804 1.03306 1.70315 1.04839 1.24581 1.21943 1.21727 0.92537 0.97110 1.06303 1.21787 0.85785 0.97479 1.03113 1.45208 1.06854 1.17439 1.44734 1.22034 0.99448 0.83460 0.97340 1.21967 0.95108 0.98131 1.02302 1.22102 0.95407 0.97769 1.00913 1.18075 0.88459 0.93049 0.94766 0.92848 1.20814 0.89618 1.05926 1.37714 0.90419 1.24975 0.96652 0.96324 0.94703 1.69896 1.02377 1.33610 1.47234 0.86995 0.78246 0.84988 0.79880 1.20076 1.21410 1.18802 0.92797 0.92697 0.92465 0.90462 0.92781 0.92184 0.92729 0.89418 0.91236 0.81548 0.90823 0.89450 0.90891 0.91634 0.91775 0.92331 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.09 -1.05 2.91 -90.62 -0.26 -1.31 16 3 C -0.15 -1.68 7.60 37.16 0.28 -1.40 16 4 C -0.02 -0.28 5.05 -27.88 -0.14 -0.42 16 5 C 0.18 3.22 6.41 -155.76 -1.00 2.22 16 6 N -0.50 -10.61 11.27 -11.02 -0.12 -10.73 16 7 C -0.03 -0.72 11.42 -17.96 -0.20 -0.92 16 8 C 0.03 0.70 6.08 -81.73 -0.50 0.21 16 9 N -0.46 -8.42 2.73 -109.43 -0.30 -8.72 16 10 C 0.10 1.44 6.07 -3.91 -0.02 1.42 16 11 C -0.14 -2.09 5.92 -26.53 -0.16 -2.25 16 12 C -0.12 -2.44 5.06 -26.41 -0.13 -2.57 16 13 C 0.08 1.77 2.02 -92.66 -0.19 1.58 16 14 H 0.05 1.27 5.78 -51.93 -0.30 0.97 16 15 C -0.50 -13.73 8.56 -34.44 -0.29 -14.03 16 16 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 17 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 19 Si 0.87 20.62 25.94 -169.99 -4.41 16.21 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.26 -5.95 6.14 56.52 0.35 -5.61 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.51 7.23 -51.93 -0.38 0.13 16 28 H 0.06 0.80 5.84 -51.93 -0.30 0.50 16 29 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 32 H 0.17 3.83 8.06 -52.49 -0.42 3.41 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.03 4.67 -51.93 -0.24 0.79 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 38 H 0.06 1.16 6.42 -51.93 -0.33 0.83 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -30.77 299.63 -8.14 -38.92 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.23 Total: 2.11 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.37 Total: -16.39 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.35 Total: -45.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.41 Total: 16.21 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.77 -8.14 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.636 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds