Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47480 * 2 1 4 4 C 1.53004 * 109.47097 * 119.99889 * 2 1 3 5 5 C 1.50699 * 109.47359 * 174.99952 * 4 2 1 6 6 N 1.30782 * 125.72295 * 269.93755 * 5 4 2 7 7 C 1.34425 * 109.32142 * 180.08540 * 6 5 4 8 8 C 1.33854 * 107.79883 * 0.02562 * 7 6 5 9 9 N 1.34403 * 125.72201 * 89.99496 * 5 4 2 10 10 C 1.46473 * 128.44901 * 359.82584 * 9 5 4 11 11 C 1.53281 * 108.69957 * 197.33066 * 10 9 5 12 12 C 1.53112 * 109.71292 * 309.25129 * 11 10 9 13 13 C 1.50708 * 128.68415 * 179.97438 * 8 7 6 14 14 H 1.08998 * 109.79006 * 76.14775 * 13 8 7 15 15 C 1.50708 * 109.74363 * 315.45135 * 13 8 7 16 16 H 1.07996 * 120.00077 * 335.52215 * 15 13 8 17 17 C 1.37871 * 119.99646 * 155.79457 * 15 13 8 18 18 N 1.31518 * 119.99792 * 185.67892 * 17 15 13 19 19 Si 1.86799 * 120.00441 * 5.68316 * 17 15 13 20 20 H 1.48492 * 109.47311 * 84.75842 * 19 17 15 21 21 H 1.48503 * 109.47173 * 204.76131 * 19 17 15 22 22 H 1.48500 * 109.46757 * 324.75631 * 19 17 15 23 23 H 1.09001 * 109.47331 * 300.00299 * 1 2 3 24 24 H 1.09003 * 109.47161 * 59.99984 * 1 2 3 25 25 H 1.08995 * 109.47478 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46875 * 239.99463 * 2 1 3 27 27 H 1.09001 * 109.47082 * 59.99549 * 3 2 1 28 28 H 1.08997 * 109.47059 * 179.97438 * 3 2 1 29 29 H 1.09011 * 109.46705 * 299.99920 * 3 2 1 30 30 H 1.09001 * 109.47279 * 54.99460 * 4 2 1 31 31 H 1.09000 * 109.46897 * 294.99727 * 4 2 1 32 32 H 1.07998 * 126.10034 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.59651 * 77.56762 * 10 9 5 34 34 H 1.08999 * 109.60019 * 317.09857 * 10 9 5 35 35 H 1.09000 * 109.42733 * 189.17880 * 11 10 9 36 36 H 1.08994 * 109.42714 * 69.32929 * 11 10 9 37 37 H 1.09005 * 109.50417 * 309.95044 * 12 11 10 38 38 H 1.09001 * 109.49760 * 189.85084 * 12 11 10 39 39 H 0.97005 * 120.00268 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 7 4.2156 -1.8162 0.6573 7 6 5.5320 -1.5765 0.7865 8 6 5.6745 -0.4051 1.4183 9 7 4.4136 0.0715 1.6735 10 6 4.1312 1.3381 2.3528 11 6 5.3970 2.2023 2.3273 12 6 6.5890 1.3874 2.8366 13 6 6.9445 0.3088 1.8039 14 1 7.3881 0.7741 0.9237 15 6 7.9174 -0.6723 2.4058 16 1 7.5546 -1.5805 2.8639 17 6 9.2702 -0.4076 2.3766 18 7 10.1264 -1.3117 2.8000 19 14 9.8869 1.2351 1.7359 20 1 9.8538 2.2375 2.8309 21 1 11.2804 1.0835 1.2455 22 1 9.0169 1.6900 0.6218 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 6.3319 -2.2155 0.4427 33 1 3.8426 1.1427 3.3856 34 1 3.3235 1.8574 1.8371 35 1 5.2539 3.0737 2.9662 36 1 5.5915 2.5302 1.3062 37 1 6.3281 0.9135 3.7829 38 1 7.4445 2.0468 2.9831 39 1 11.0781 -1.1254 2.7799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261015964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = 16.210742 kcal Electronic energy + Delta-G solvation = -18795.948333 eV Core-core repulsion = 16123.659937 eV Total energy + Delta-G solvation = -2672.288397 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.21711 -37.82441 -37.23697 -35.21635 -33.38949 -31.45057 -30.30358 -28.11462 -27.03193 -26.85430 -23.81528 -22.77590 -21.94477 -20.55398 -19.67001 -18.99231 -17.77661 -16.83303 -16.44481 -15.76215 -15.44965 -15.02547 -14.85081 -14.69849 -14.53737 -14.39746 -14.22419 -13.48473 -13.32011 -13.26538 -12.89989 -12.79345 -12.67403 -12.29473 -12.01947 -11.80591 -11.79517 -11.70950 -11.55769 -11.38351 -11.33052 -10.85827 -10.62131 -10.23811 -8.96693 -8.29709 -6.34925 1.28710 1.33543 1.37674 1.45957 2.02843 2.27523 2.33240 3.03490 3.53892 3.68067 3.90816 3.92044 4.02251 4.08312 4.22364 4.31059 4.41776 4.51162 4.61360 4.67054 4.70641 4.78723 4.82298 4.89431 4.94228 5.01983 5.04682 5.07845 5.10853 5.30010 5.31772 5.34547 5.46503 5.51228 5.60238 5.73431 5.93984 6.29220 6.57188 6.71184 7.28464 7.29432 8.87244 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036523 B = 0.006516 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.453848 B = 4296.174091 C = 4709.523576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.022 4.022 5 C 0.199 3.801 6 N -0.533 5.533 7 C -0.061 4.061 8 C 0.012 3.988 9 N -0.453 5.453 10 C 0.091 3.909 11 C -0.130 4.130 12 C -0.120 4.120 13 C 0.078 3.922 14 H 0.048 0.952 15 C -0.505 4.505 16 H 0.023 0.977 17 C 0.017 3.983 18 N -0.948 5.948 19 Si 0.941 3.059 20 H -0.254 1.254 21 H -0.290 1.290 22 H -0.244 1.244 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.570 11.914 -2.750 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.210 4.210 4 C -0.061 4.061 5 C -0.064 4.064 6 N -0.253 5.253 7 C -0.206 4.206 8 C -0.103 4.103 9 N -0.137 5.137 10 C -0.029 4.029 11 C -0.167 4.167 12 C -0.159 4.159 13 C 0.058 3.942 14 H 0.066 0.934 15 C -0.543 4.543 16 H 0.041 0.959 17 C -0.181 4.181 18 N -0.588 5.588 19 Si 0.764 3.236 20 H -0.178 1.178 21 H -0.216 1.216 22 H -0.168 1.168 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.160 0.840 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.778 11.311 -3.012 22.128 hybrid contribution 1.752 0.262 0.228 1.786 sum -17.027 11.573 -2.784 20.775 Atomic orbital electron populations 1.21772 0.92414 1.02445 1.02934 1.21058 0.97265 0.96030 0.96350 1.22054 0.99916 0.95839 1.03166 1.20231 0.82319 1.03228 1.00277 1.23648 0.95515 0.87164 1.00048 1.70270 1.04124 1.26747 1.24186 1.21600 0.93235 0.97900 1.07862 1.21511 0.87195 0.97593 1.04048 1.45385 1.05214 1.18737 1.44336 1.22477 1.00336 0.81655 0.98467 1.21943 0.92913 0.98712 1.03134 1.21916 0.97880 0.97037 0.99042 1.17933 0.87976 0.93116 0.95169 0.93409 1.20945 0.91037 1.05129 1.37219 0.95854 1.25879 0.96626 1.00551 0.95033 1.70067 1.02806 1.36322 1.49563 0.85879 0.77439 0.79987 0.80281 1.17845 1.21635 1.16818 0.91026 0.91752 0.92343 0.93006 0.90280 0.94752 0.91555 0.89109 0.88194 0.83973 0.89014 0.85762 0.86529 0.91385 0.93081 0.92200 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.09 -1.72 2.91 -10.79 -0.03 -1.75 16 3 C -0.15 -2.71 7.60 71.98 0.55 -2.16 16 4 C -0.02 -0.51 5.05 29.85 0.15 -0.36 16 5 C 0.20 6.99 6.41 138.25 0.89 7.87 16 6 N -0.53 -23.43 11.27 -188.79 -2.13 -25.56 16 7 C -0.06 -2.96 11.42 83.30 0.95 -2.01 16 8 C 0.01 0.52 6.08 40.73 0.25 0.77 16 9 N -0.45 -16.01 2.73 -500.13 -1.37 -17.37 16 10 C 0.09 2.25 6.07 86.48 0.52 2.78 16 11 C -0.13 -3.39 5.92 30.73 0.18 -3.21 16 12 C -0.12 -4.54 5.06 30.80 0.16 -4.39 16 13 C 0.08 3.65 2.02 -12.11 -0.02 3.63 16 14 H 0.05 2.27 5.78 -2.39 -0.01 2.26 16 15 C -0.51 -29.13 8.56 25.60 0.22 -28.91 16 16 H 0.02 1.54 8.05 -2.91 -0.02 1.52 16 17 C 0.02 0.96 5.47 84.65 0.46 1.42 16 18 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 19 Si 0.94 42.84 25.94 68.60 1.78 44.62 16 20 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.24 -10.30 6.14 99.48 0.61 -9.69 16 23 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.01 7.23 -2.39 -0.02 1.00 16 28 H 0.03 0.79 5.84 -2.39 -0.01 0.78 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 1.78 7.95 -2.39 -0.02 1.77 16 32 H 0.14 7.31 8.06 -2.91 -0.02 7.28 16 33 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.12 2.21 4.67 -2.39 -0.01 2.20 16 35 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 37 H 0.05 2.03 8.08 -2.38 -0.02 2.01 16 38 H 0.06 2.22 6.42 -2.39 -0.02 2.20 16 39 H 0.27 15.62 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -73.25 299.63 4.44 -68.81 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.92 Total: 16.19 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 4.93 Total: -27.54 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.19 Total: -102.09 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.78 Total: 44.62 kcal Total: -73.25 4.44 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.024 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds