Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47077 * 2 1 4 4 C 1.53002 * 109.47043 * 240.00293 * 2 1 3 5 5 C 1.50693 * 109.47455 * 120.00009 * 2 1 3 6 6 N 1.30780 * 125.72739 * 245.87009 * 5 2 1 7 7 C 1.34429 * 109.32533 * 180.02562 * 6 5 2 8 8 C 1.33859 * 107.79491 * 359.97438 * 7 6 5 9 9 N 1.34413 * 125.72012 * 65.90537 * 5 2 1 10 10 C 1.46467 * 128.44671 * 359.84178 * 9 5 2 11 11 C 1.53282 * 108.69960 * 197.29711 * 10 9 5 12 12 C 1.53115 * 109.67202 * 309.28061 * 11 10 9 13 13 C 1.50711 * 128.67847 * 179.88264 * 8 7 6 14 14 H 1.09002 * 109.74415 * 76.13934 * 13 8 7 15 15 C 1.50701 * 109.74616 * 315.47000 * 13 8 7 16 16 H 1.08003 * 120.00060 * 324.94306 * 15 13 8 17 17 C 1.37874 * 120.00043 * 144.94677 * 15 13 8 18 18 N 1.31508 * 120.00278 * 5.08351 * 17 15 13 19 19 Si 1.86796 * 119.99834 * 185.08615 * 17 15 13 20 20 H 1.48506 * 109.47356 * 89.99772 * 19 17 15 21 21 H 1.48504 * 109.47241 * 209.99637 * 19 17 15 22 22 H 1.48499 * 109.47391 * 329.99804 * 19 17 15 23 23 H 1.09002 * 109.47005 * 294.58196 * 1 2 3 24 24 H 1.08993 * 109.47168 * 54.57582 * 1 2 3 25 25 H 1.08995 * 109.47073 * 174.58363 * 1 2 3 26 26 H 1.09000 * 109.47456 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47283 * 300.00306 * 3 2 1 28 28 H 1.09000 * 109.47292 * 60.00512 * 3 2 1 29 29 H 1.09003 * 109.46488 * 299.99940 * 4 2 1 30 30 H 1.09000 * 109.47274 * 59.99338 * 4 2 1 31 31 H 1.08998 * 109.47261 * 180.02562 * 4 2 1 32 32 H 1.07997 * 126.10109 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.59736 * 77.53600 * 10 9 5 34 34 H 1.08997 * 109.73060 * 317.14070 * 10 9 5 35 35 H 1.09006 * 109.42569 * 69.32671 * 11 10 9 36 36 H 1.08996 * 109.43088 * 189.22820 * 11 10 9 37 37 H 1.09007 * 109.49315 * 189.82522 * 12 11 10 38 38 H 1.08995 * 109.49734 * 309.92186 * 12 11 10 39 39 H 0.96996 * 120.00293 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.6962 -0.1589 2.2130 7 6 2.9803 -1.0928 3.1373 8 6 2.4752 -2.2569 2.7113 9 7 1.8740 -2.0173 1.5016 10 6 1.1957 -3.0381 0.6998 11 6 0.8983 -4.2475 1.5934 12 6 2.1723 -4.6695 2.3304 13 6 2.5255 -3.6066 3.3801 14 1 1.8071 -3.6386 4.1992 15 6 3.9132 -3.8608 3.9100 16 1 4.7734 -3.4963 3.3680 17 6 4.0848 -4.5587 5.0866 18 7 3.0459 -5.0886 5.6943 19 14 5.7929 -4.7515 5.8176 20 1 6.0678 -3.6196 6.7389 21 1 5.8685 -6.0304 6.5685 22 1 6.8004 -4.7576 4.7267 23 1 -0.3633 0.4275 0.9345 24 1 -0.3633 0.5956 -0.8374 25 1 -0.3633 -1.0230 -0.0970 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 3.5191 -0.9323 4.0594 33 1 1.8399 -3.3427 -0.1252 34 1 0.2623 -2.6363 0.3057 35 1 0.1303 -3.9814 2.3198 36 1 0.5444 -5.0747 0.9781 37 1 2.0059 -5.6261 2.8259 38 1 2.9903 -4.7664 1.6167 39 1 3.1665 -5.5792 6.5223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261019839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = 33.043793 kcal Electronic energy + Delta-G solvation = -18947.142685 eV Core-core repulsion = 16275.584224 eV Total energy + Delta-G solvation = -2671.558461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60849 -36.64690 -35.76240 -33.37585 -31.16191 -29.54450 -27.25452 -27.16813 -26.69647 -25.24697 -22.36021 -21.77922 -20.72035 -18.78677 -18.03576 -16.51922 -15.88801 -15.05803 -14.61593 -14.32009 -14.16032 -13.78309 -13.41810 -13.01782 -12.85498 -12.63290 -12.42062 -12.18711 -11.94025 -11.61880 -11.38820 -11.23565 -11.09124 -10.92863 -10.79133 -10.75541 -10.56664 -10.26929 -10.10557 -9.46059 -9.26532 -8.98686 -8.64134 -8.49176 -7.19416 -6.09798 -4.13776 2.98576 3.29161 3.36179 3.39882 3.54655 4.05637 4.40795 4.65849 4.92420 5.06244 5.10250 5.16013 5.24458 5.36138 5.48741 5.61795 5.65056 5.80609 5.83904 5.93442 6.00350 6.02285 6.10354 6.12023 6.17527 6.27273 6.40035 6.50361 6.55830 6.76310 6.78605 6.92702 7.21278 7.52256 7.63564 7.80754 7.85446 8.11686 8.31349 8.93623 9.01743 9.50922 10.98232 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032185 B = 0.006763 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.770397 B = 4138.950922 C = 4625.391028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.025 3.975 3 C -0.122 4.122 4 C -0.146 4.146 5 C 0.179 3.821 6 N -0.495 5.495 7 C -0.043 4.043 8 C 0.032 3.968 9 N -0.457 5.457 10 C 0.108 3.892 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.104 3.896 14 H 0.074 0.926 15 C -0.503 4.503 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.891 5.891 19 Si 0.894 3.106 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.163 0.837 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 5.175 -11.790 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 C -0.179 4.179 4 C -0.204 4.204 5 C -0.082 4.082 6 N -0.214 5.214 7 C -0.188 4.188 8 C -0.082 4.082 9 N -0.142 5.142 10 C -0.014 4.014 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.084 3.916 14 H 0.091 0.909 15 C -0.541 4.541 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.529 5.529 19 Si 0.722 3.278 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.181 0.819 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.613 5.805 -11.656 14.180 hybrid contribution 0.713 -1.123 0.457 1.406 sum -4.901 4.683 -11.199 13.090 Atomic orbital electron populations 1.21951 0.94148 1.01694 1.02199 1.18792 0.94761 0.95236 0.88954 1.21599 1.01691 0.93383 1.01257 1.22003 1.01728 1.00264 0.96406 1.22516 1.05261 0.81533 0.98904 1.70262 1.16249 1.32691 1.02225 1.21650 1.07556 0.88873 1.00766 1.22458 0.98857 1.00396 0.86441 1.45169 1.43046 1.08020 1.17932 1.21936 0.96571 0.88768 0.94171 1.22000 1.01067 0.95644 0.98777 1.21859 0.93459 1.01392 0.98107 1.17711 0.98855 0.82543 0.92448 0.90855 1.20921 0.91168 1.34996 1.07040 0.92413 1.24974 0.96981 0.95027 0.96599 1.69916 1.29620 1.35091 1.18267 0.86548 0.84408 0.77493 0.79340 1.20386 1.21281 1.19830 0.92190 0.92011 0.92794 0.92140 0.93039 0.91820 0.92581 0.92009 0.92261 0.81943 0.90954 0.90469 0.91576 0.91312 0.91492 0.93364 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.02 0.35 0.81 -155.66 -0.13 0.22 16 3 C -0.12 -1.62 7.96 37.16 0.30 -1.32 16 4 C -0.15 -1.79 8.31 37.16 0.31 -1.48 16 5 C 0.18 3.38 6.25 -155.76 -0.97 2.41 16 6 N -0.49 -10.76 10.55 -11.02 -0.12 -10.88 16 7 C -0.04 -1.02 11.42 -17.95 -0.20 -1.22 16 8 C 0.03 0.74 6.08 -81.73 -0.50 0.25 16 9 N -0.46 -8.87 3.13 -109.43 -0.34 -9.22 16 10 C 0.11 1.69 5.18 -3.91 -0.02 1.67 16 11 C -0.14 -2.28 5.92 -26.53 -0.16 -2.44 16 12 C -0.11 -2.32 5.26 -26.41 -0.14 -2.46 16 13 C 0.10 2.55 2.59 -92.65 -0.24 2.31 16 14 H 0.07 1.99 7.38 -51.93 -0.38 1.61 16 15 C -0.50 -13.50 7.98 -34.44 -0.27 -13.78 16 16 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 17 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 18 N -0.89 -24.96 12.84 55.43 0.71 -24.24 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.63 5.81 -51.93 -0.30 0.32 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.06 0.66 5.50 -51.93 -0.29 0.38 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.16 3.79 8.06 -52.49 -0.42 3.37 16 33 H 0.07 1.05 7.22 -51.93 -0.37 0.67 16 34 H 0.08 1.01 5.78 -51.93 -0.30 0.71 16 35 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 38 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -29.43 304.30 -8.26 -37.69 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.26 Total: 1.57 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.81 Total: -15.56 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.25 Total: -44.34 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.43 -8.26 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.730 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds