Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47077 * 2 1 4 4 C 1.53002 * 109.47043 * 240.00293 * 2 1 3 5 5 C 1.50693 * 109.47455 * 120.00009 * 2 1 3 6 6 N 1.30780 * 125.72739 * 245.87009 * 5 2 1 7 7 C 1.34429 * 109.32533 * 180.02562 * 6 5 2 8 8 C 1.33859 * 107.79491 * 359.97438 * 7 6 5 9 9 N 1.34413 * 125.72012 * 65.90537 * 5 2 1 10 10 C 1.46467 * 128.44671 * 359.84178 * 9 5 2 11 11 C 1.53282 * 108.69960 * 197.29711 * 10 9 5 12 12 C 1.53115 * 109.67202 * 309.28061 * 11 10 9 13 13 C 1.50711 * 128.67847 * 179.88264 * 8 7 6 14 14 H 1.09002 * 109.74415 * 76.13934 * 13 8 7 15 15 C 1.50701 * 109.74616 * 315.47000 * 13 8 7 16 16 H 1.08003 * 120.00060 * 324.94306 * 15 13 8 17 17 C 1.37874 * 120.00043 * 144.94677 * 15 13 8 18 18 N 1.31508 * 120.00278 * 5.08351 * 17 15 13 19 19 Si 1.86796 * 119.99834 * 185.08615 * 17 15 13 20 20 H 1.48506 * 109.47356 * 89.99772 * 19 17 15 21 21 H 1.48504 * 109.47241 * 209.99637 * 19 17 15 22 22 H 1.48499 * 109.47391 * 329.99804 * 19 17 15 23 23 H 1.09002 * 109.47005 * 294.58196 * 1 2 3 24 24 H 1.08993 * 109.47168 * 54.57582 * 1 2 3 25 25 H 1.08995 * 109.47073 * 174.58363 * 1 2 3 26 26 H 1.09000 * 109.47456 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47283 * 300.00306 * 3 2 1 28 28 H 1.09000 * 109.47292 * 60.00512 * 3 2 1 29 29 H 1.09003 * 109.46488 * 299.99940 * 4 2 1 30 30 H 1.09000 * 109.47274 * 59.99338 * 4 2 1 31 31 H 1.08998 * 109.47261 * 180.02562 * 4 2 1 32 32 H 1.07997 * 126.10109 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.59736 * 77.53600 * 10 9 5 34 34 H 1.08997 * 109.73060 * 317.14070 * 10 9 5 35 35 H 1.09006 * 109.42569 * 69.32671 * 11 10 9 36 36 H 1.08996 * 109.43088 * 189.22820 * 11 10 9 37 37 H 1.09007 * 109.49315 * 189.82522 * 12 11 10 38 38 H 1.08995 * 109.49734 * 309.92186 * 12 11 10 39 39 H 0.96996 * 120.00293 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.6962 -0.1589 2.2130 7 6 2.9803 -1.0928 3.1373 8 6 2.4752 -2.2569 2.7113 9 7 1.8740 -2.0173 1.5016 10 6 1.1957 -3.0381 0.6998 11 6 0.8983 -4.2475 1.5934 12 6 2.1723 -4.6695 2.3304 13 6 2.5255 -3.6066 3.3801 14 1 1.8071 -3.6386 4.1992 15 6 3.9132 -3.8608 3.9100 16 1 4.7734 -3.4963 3.3680 17 6 4.0848 -4.5587 5.0866 18 7 3.0459 -5.0886 5.6943 19 14 5.7929 -4.7515 5.8176 20 1 6.0678 -3.6196 6.7389 21 1 5.8685 -6.0304 6.5685 22 1 6.8004 -4.7576 4.7267 23 1 -0.3633 0.4275 0.9345 24 1 -0.3633 0.5956 -0.8374 25 1 -0.3633 -1.0230 -0.0970 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 3.5191 -0.9323 4.0594 33 1 1.8399 -3.3427 -0.1252 34 1 0.2623 -2.6363 0.3057 35 1 0.1303 -3.9814 2.3198 36 1 0.5444 -5.0747 0.9781 37 1 2.0059 -5.6261 2.8259 38 1 2.9903 -4.7664 1.6167 39 1 3.1665 -5.5792 6.5223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = 16.896762 kcal Electronic energy + Delta-G solvation = -18947.842873 eV Core-core repulsion = 16275.584224 eV Total energy + Delta-G solvation = -2672.258648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.19583 -37.96277 -37.20575 -35.23581 -32.96776 -31.17429 -28.53702 -28.17381 -28.02639 -27.05918 -24.09777 -23.20384 -22.33934 -20.23101 -19.56724 -18.53243 -17.35868 -16.57691 -16.48510 -15.55867 -15.35762 -15.01821 -14.97124 -14.62703 -14.45776 -14.22924 -14.04964 -13.13619 -13.05974 -13.02409 -12.90127 -12.80226 -12.55696 -12.32798 -12.25816 -12.11984 -11.90382 -11.84451 -11.66386 -11.24817 -11.15504 -10.73224 -10.52357 -10.18902 -8.94598 -8.17510 -6.28191 1.35560 1.39790 1.42084 1.50723 2.06786 2.32896 2.43239 3.11514 3.42365 3.71286 3.85542 3.93082 4.07192 4.18173 4.23311 4.35555 4.51101 4.62063 4.70089 4.76551 4.79551 4.82394 4.89844 5.00405 5.02665 5.05381 5.07465 5.14402 5.22496 5.23638 5.42778 5.49412 5.52926 5.55212 5.75906 5.82803 6.02595 6.27795 6.62992 6.82920 7.35019 7.39022 8.89364 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032185 B = 0.006763 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.770397 B = 4138.950922 C = 4625.391028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.019 3.981 3 C -0.119 4.119 4 C -0.143 4.143 5 C 0.198 3.802 6 N -0.525 5.525 7 C -0.067 4.067 8 C 0.009 3.991 9 N -0.455 5.455 10 C 0.102 3.898 11 C -0.128 4.128 12 C -0.103 4.103 13 C 0.105 3.895 14 H 0.036 0.964 15 C -0.515 4.515 16 H 0.043 0.957 17 C 0.021 3.979 18 N -0.920 5.920 19 Si 0.953 3.047 20 H -0.277 1.277 21 H -0.278 1.278 22 H -0.271 1.271 23 H 0.042 0.958 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.145 0.855 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 5.455 -14.887 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.177 4.177 4 C -0.200 4.200 5 C -0.064 4.064 6 N -0.245 5.245 7 C -0.212 4.212 8 C -0.106 4.106 9 N -0.139 5.139 10 C -0.018 4.018 11 C -0.166 4.166 12 C -0.141 4.141 13 C 0.085 3.915 14 H 0.054 0.946 15 C -0.554 4.554 16 H 0.061 0.939 17 C -0.178 4.178 18 N -0.559 5.559 19 Si 0.779 3.221 20 H -0.202 1.202 21 H -0.204 1.204 22 H -0.195 1.195 23 H 0.061 0.939 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.163 0.837 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.762 6.070 -14.763 17.335 hybrid contribution 1.040 -1.128 1.362 2.052 sum -5.722 4.942 -13.400 15.386 Atomic orbital electron populations 1.21939 0.91899 1.02877 1.02844 1.19166 0.96463 0.95196 0.87437 1.21599 1.00593 0.93202 1.02289 1.22001 1.00748 1.00905 0.96383 1.23635 1.02294 0.81345 0.99158 1.70250 1.18260 1.32876 1.03091 1.21594 1.08440 0.90041 1.01101 1.22072 1.00690 0.99346 0.88454 1.45340 1.42587 1.09020 1.16981 1.22320 0.98370 0.87426 0.93726 1.21924 0.98077 0.97615 0.98963 1.21634 0.95913 0.99230 0.97330 1.17499 0.96652 0.84774 0.92588 0.94627 1.21119 0.92027 1.34754 1.07469 0.93897 1.25657 1.00362 0.94882 0.96939 1.70016 1.31318 1.35922 1.18671 0.85629 0.80334 0.77618 0.78546 1.20232 1.20374 1.19546 0.93927 0.88511 0.91877 0.93908 0.89253 0.93520 0.91826 0.88465 0.93897 0.83721 0.88844 0.86704 0.92467 0.87198 0.93436 0.93743 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.37 71.98 0.60 -2.13 16 2 C 0.02 0.49 0.81 -52.93 -0.04 0.45 16 3 C -0.12 -2.88 7.96 71.98 0.57 -2.31 16 4 C -0.14 -2.85 8.31 71.98 0.60 -2.25 16 5 C 0.20 7.28 6.25 138.24 0.86 8.15 16 6 N -0.52 -23.32 10.55 -188.78 -1.99 -25.31 16 7 C -0.07 -3.30 11.42 83.30 0.95 -2.35 16 8 C 0.01 0.44 6.08 40.73 0.25 0.69 16 9 N -0.46 -17.20 3.13 -500.14 -1.57 -18.77 16 10 C 0.10 2.85 5.18 86.48 0.45 3.30 16 11 C -0.13 -3.99 5.92 30.73 0.18 -3.81 16 12 C -0.10 -4.37 5.26 30.80 0.16 -4.21 16 13 C 0.10 5.35 2.59 -12.11 -0.03 5.32 16 14 H 0.04 2.06 7.38 -2.39 -0.02 2.05 16 15 C -0.52 -28.92 7.98 25.60 0.20 -28.71 16 16 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 17 C 0.02 1.17 5.45 84.65 0.46 1.63 16 18 N -0.92 -53.41 12.84 21.45 0.28 -53.13 16 19 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.13 5.81 -2.39 -0.01 1.12 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 29 H 0.06 1.18 5.50 -2.39 -0.01 1.16 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.15 7.35 8.06 -2.91 -0.02 7.33 16 33 H 0.09 2.29 7.22 -2.38 -0.02 2.27 16 34 H 0.12 2.41 5.78 -2.39 -0.01 2.39 16 35 H 0.06 1.90 8.11 -2.38 -0.02 1.88 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -68.12 304.30 4.98 -63.14 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.01 Total: 13.88 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 5.22 Total: -26.25 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -3.28 Total: -97.22 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -68.12 4.98 -63.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.041 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds