Wall clock time and date at job start Mon Mar 30 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53124 * 109.52578 * 2 1 4 4 C 1.53037 * 109.28148 * 182.37737 * 3 2 1 5 5 N 1.46844 * 109.52152 * 59.17731 * 4 3 2 6 6 C 1.46906 * 110.99887 * 174.16043 * 5 4 3 7 7 C 1.50701 * 109.46965 * 170.00048 * 6 5 4 8 8 C 1.35964 * 125.47541 * 95.02749 * 7 6 5 9 9 C 1.39298 * 108.09533 * 179.97438 * 8 7 6 10 10 C 1.39747 * 107.05244 * 0.02562 * 9 8 7 11 11 C 1.39950 * 126.35775 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99784 * 180.02562 * 11 10 9 13 13 C 1.40071 * 119.99867 * 0.03046 * 11 10 9 14 14 N 1.30863 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99875 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47366 * 89.99838 * 15 13 11 17 17 H 1.48503 * 109.47090 * 209.99941 * 15 13 11 18 18 H 1.48503 * 109.47299 * 329.99642 * 15 13 11 19 19 N 1.36170 * 125.47512 * 274.71502 * 7 6 5 20 20 H 0.97006 * 125.74007 * 0.02562 * 19 7 6 21 21 C 1.46850 * 111.19991 * 298.25708 * 5 4 3 22 22 C 1.53032 * 109.52098 * 61.74469 * 21 5 4 23 23 H 1.09000 * 109.46748 * 60.00150 * 1 2 3 24 24 H 1.08994 * 109.46785 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47129 * 300.00011 * 1 2 3 26 26 H 1.09001 * 109.52472 * 120.12620 * 2 1 3 27 27 H 1.08997 * 109.50392 * 62.43159 * 3 2 1 28 28 H 1.09000 * 109.49712 * 302.31793 * 3 2 1 29 29 H 1.08995 * 109.46089 * 299.16330 * 4 3 2 30 30 H 1.09000 * 109.45256 * 179.18504 * 4 3 2 31 31 H 1.08993 * 109.47164 * 289.99991 * 6 5 4 32 32 H 1.08996 * 109.46920 * 50.00025 * 6 5 4 33 33 H 1.08006 * 125.95190 * 359.95385 * 8 7 6 34 34 H 1.07999 * 126.48073 * 179.97438 * 9 8 7 35 35 H 0.96998 * 120.00101 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.46314 * 181.76064 * 21 5 4 37 37 H 1.08998 * 109.46244 * 301.72632 * 21 5 4 38 38 H 1.09004 * 109.50441 * 180.87586 * 22 21 5 39 39 H 1.09002 * 109.53781 * 60.78566 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4432 0.0000 4 6 3.5710 1.4371 -0.0599 5 7 4.0116 0.7425 -1.2764 6 6 5.4686 0.8373 -1.4382 7 6 5.9118 -0.0822 -2.5469 8 6 6.1016 0.2796 -3.8437 9 6 6.5089 -0.8483 -4.5524 10 6 6.5596 -1.9078 -3.6425 11 6 6.9214 -3.2294 -3.9273 12 1 6.9248 -3.9697 -3.1410 13 6 7.2793 -3.5919 -5.2321 14 7 7.2748 -2.6949 -6.1849 15 14 7.7629 -5.3557 -5.6120 16 1 6.5541 -6.1290 -5.9944 17 1 8.7360 -5.3715 -6.7337 18 1 8.3831 -5.9688 -4.4101 19 7 6.1922 -1.4076 -2.4097 20 1 6.1398 -1.9154 -1.5848 21 6 3.5722 -0.6587 -1.2765 22 6 2.0431 -0.7151 -1.2530 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8943 -0.5156 0.8886 27 1 1.7153 1.9451 0.9108 28 1 1.6456 1.9697 -0.8683 29 1 3.9666 0.9224 0.8156 30 1 3.9378 2.4634 -0.0747 31 1 5.7406 1.8632 -1.6865 32 1 5.9571 0.5469 -0.5082 33 1 5.9607 1.2691 -4.2531 34 1 6.7409 -0.8955 -5.6061 35 1 7.5223 -2.9459 -7.0885 36 1 3.9401 -1.1546 -2.1748 37 1 3.9679 -1.1635 -0.3953 38 1 1.7175 -1.7553 -1.2374 39 1 1.6464 -0.2230 -2.1410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261019842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:45 Heat of formation + Delta-G solvation = 24.975014 kcal Electronic energy + Delta-G solvation = -18240.628141 eV Core-core repulsion = 15568.719792 eV Total energy + Delta-G solvation = -2671.908349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50444 -38.31298 -34.51582 -33.28304 -30.63005 -29.69678 -28.95747 -27.66900 -25.54172 -23.09035 -22.57160 -21.23444 -19.49751 -19.07074 -18.70160 -17.03993 -15.66477 -15.34372 -14.69774 -14.49276 -14.34721 -13.95857 -13.61594 -13.05308 -12.59037 -12.34371 -12.19854 -11.86156 -11.76011 -11.68515 -11.50868 -11.36539 -11.13568 -11.11922 -10.96978 -10.55077 -10.39115 -10.11679 -10.03092 -9.77511 -9.52379 -9.20798 -7.86675 -7.12781 -6.61300 -6.41359 -4.05668 3.03382 3.14850 3.17964 3.69775 4.03167 4.40143 4.76831 4.85018 4.93771 4.95364 5.00784 5.40146 5.48280 5.57466 5.58670 5.65707 5.71353 5.75758 5.82850 5.94197 5.96268 5.98344 6.15148 6.20879 6.21540 6.32794 6.43736 6.58519 6.62248 7.00329 7.26571 7.46084 7.53122 7.61123 7.90072 8.05911 8.35354 8.48135 8.98519 9.15226 9.33869 9.54906 10.47344 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032910 B = 0.005113 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.591408 B = 5474.471359 C = 5963.193809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.109 4.109 4 C 0.053 3.947 5 N -0.533 5.533 6 C 0.148 3.852 7 C -0.111 4.111 8 C -0.149 4.149 9 C -0.291 4.291 10 C 0.216 3.784 11 C -0.456 4.456 12 H 0.065 0.935 13 C 0.073 3.927 14 N -0.801 5.801 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.267 1.267 19 N -0.595 5.595 20 H 0.385 0.615 21 C 0.055 3.945 22 C -0.110 4.110 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.016 0.984 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.273 0.727 36 H 0.097 0.903 37 H 0.016 0.984 38 H 0.060 0.940 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 3.958 9.596 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.147 4.147 4 C -0.075 4.075 5 N -0.258 5.258 6 C 0.022 3.978 7 C -0.217 4.217 8 C -0.176 4.176 9 C -0.314 4.314 10 C 0.105 3.895 11 C -0.492 4.492 12 H 0.084 0.916 13 C -0.143 4.143 14 N -0.429 5.429 15 Si 0.744 3.256 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.191 1.191 19 N -0.198 5.198 20 H 0.218 0.782 21 C -0.073 4.073 22 C -0.148 4.148 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.034 0.966 33 H 0.116 0.884 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.387 4.237 9.074 13.062 hybrid contribution 0.583 -1.414 0.940 1.795 sum -7.804 2.823 10.014 13.006 Atomic orbital electron populations 1.21805 0.95468 1.01432 1.01468 1.21195 0.95246 0.96385 0.98478 1.21621 0.95074 0.96378 1.01584 1.22063 0.95487 0.98858 0.91086 1.62166 1.13541 1.14291 1.35761 1.20220 0.85278 0.98213 0.94137 1.19122 1.21640 0.85108 0.95824 1.20311 1.06817 0.97853 0.92636 1.21782 1.18341 0.90758 1.00471 1.18131 0.95954 0.93690 0.81747 1.18401 1.42924 0.93050 0.94811 0.91641 1.25583 0.94088 0.99000 0.95610 1.69781 1.37416 1.33873 1.01823 0.86165 0.78776 0.82123 0.78576 1.19785 1.20355 1.19149 1.41977 1.60476 1.08144 1.09163 0.78215 1.22150 0.94604 0.89126 1.01412 1.21644 0.95605 0.99720 0.97812 0.92601 0.92920 0.93115 0.92040 0.92225 0.91140 0.95836 0.91228 0.90507 0.96598 0.88393 0.83093 0.91595 0.88488 0.96551 0.92120 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.21 37.16 0.34 -1.13 16 2 C -0.09 -1.14 2.79 -90.49 -0.25 -1.40 16 3 C -0.11 -1.31 5.38 -26.65 -0.14 -1.45 16 4 C 0.05 0.73 5.42 -3.84 -0.02 0.71 16 5 N -0.53 -9.05 4.80 -236.12 -1.13 -10.18 16 6 C 0.15 2.73 5.81 -4.97 -0.03 2.70 16 7 C -0.11 -2.51 5.08 -81.48 -0.41 -2.93 16 8 C -0.15 -3.73 10.69 -40.00 -0.43 -4.15 16 9 C -0.29 -8.10 9.80 -38.62 -0.38 -8.47 16 10 C 0.22 5.86 6.89 -83.87 -0.58 5.29 16 11 C -0.46 -12.34 9.45 -38.25 -0.36 -12.70 16 12 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 13 C 0.07 1.89 5.50 -17.28 -0.09 1.80 16 14 N -0.80 -21.55 10.26 55.56 0.57 -20.98 16 15 Si 0.92 19.40 29.56 -169.99 -5.03 14.37 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 N -0.60 -13.92 4.90 -6.67 -0.03 -13.95 16 20 H 0.38 8.04 8.95 -40.82 -0.37 7.67 16 21 C 0.05 0.94 4.87 -3.83 -0.02 0.93 16 22 C -0.11 -1.59 5.38 -26.65 -0.14 -1.74 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.02 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 34 H 0.15 4.44 5.70 -52.49 -0.30 4.14 16 35 H 0.27 6.71 8.30 -40.82 -0.34 6.38 16 36 H 0.10 2.01 5.79 -51.93 -0.30 1.71 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -28.18 307.51 -9.93 -38.11 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.43 Total: 10.53 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -2.52 Total: -22.54 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.60 Total: -45.11 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.18 -9.93 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.090 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds