Wall clock time and date at job start Mon Mar 30 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53124 * 109.52578 * 2 1 4 4 C 1.53037 * 109.28148 * 182.37737 * 3 2 1 5 5 N 1.46844 * 109.52152 * 59.17731 * 4 3 2 6 6 C 1.46906 * 110.99887 * 174.16043 * 5 4 3 7 7 C 1.50701 * 109.46965 * 170.00048 * 6 5 4 8 8 C 1.35964 * 125.47541 * 95.02749 * 7 6 5 9 9 C 1.39298 * 108.09533 * 179.97438 * 8 7 6 10 10 C 1.39747 * 107.05244 * 0.02562 * 9 8 7 11 11 C 1.39950 * 126.35775 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99784 * 180.02562 * 11 10 9 13 13 C 1.40071 * 119.99867 * 0.03046 * 11 10 9 14 14 N 1.30863 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99875 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47366 * 89.99838 * 15 13 11 17 17 H 1.48503 * 109.47090 * 209.99941 * 15 13 11 18 18 H 1.48503 * 109.47299 * 329.99642 * 15 13 11 19 19 N 1.36170 * 125.47512 * 274.71502 * 7 6 5 20 20 H 0.97006 * 125.74007 * 0.02562 * 19 7 6 21 21 C 1.46850 * 111.19991 * 298.25708 * 5 4 3 22 22 C 1.53032 * 109.52098 * 61.74469 * 21 5 4 23 23 H 1.09000 * 109.46748 * 60.00150 * 1 2 3 24 24 H 1.08994 * 109.46785 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47129 * 300.00011 * 1 2 3 26 26 H 1.09001 * 109.52472 * 120.12620 * 2 1 3 27 27 H 1.08997 * 109.50392 * 62.43159 * 3 2 1 28 28 H 1.09000 * 109.49712 * 302.31793 * 3 2 1 29 29 H 1.08995 * 109.46089 * 299.16330 * 4 3 2 30 30 H 1.09000 * 109.45256 * 179.18504 * 4 3 2 31 31 H 1.08993 * 109.47164 * 289.99991 * 6 5 4 32 32 H 1.08996 * 109.46920 * 50.00025 * 6 5 4 33 33 H 1.08006 * 125.95190 * 359.95385 * 8 7 6 34 34 H 1.07999 * 126.48073 * 179.97438 * 9 8 7 35 35 H 0.96998 * 120.00101 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.46314 * 181.76064 * 21 5 4 37 37 H 1.08998 * 109.46244 * 301.72632 * 21 5 4 38 38 H 1.09004 * 109.50441 * 180.87586 * 22 21 5 39 39 H 1.09002 * 109.53781 * 60.78566 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4432 0.0000 4 6 3.5710 1.4371 -0.0599 5 7 4.0116 0.7425 -1.2764 6 6 5.4686 0.8373 -1.4382 7 6 5.9118 -0.0822 -2.5469 8 6 6.1016 0.2796 -3.8437 9 6 6.5089 -0.8483 -4.5524 10 6 6.5596 -1.9078 -3.6425 11 6 6.9214 -3.2294 -3.9273 12 1 6.9248 -3.9697 -3.1410 13 6 7.2793 -3.5919 -5.2321 14 7 7.2748 -2.6949 -6.1849 15 14 7.7629 -5.3557 -5.6120 16 1 6.5541 -6.1290 -5.9944 17 1 8.7360 -5.3715 -6.7337 18 1 8.3831 -5.9688 -4.4101 19 7 6.1922 -1.4076 -2.4097 20 1 6.1398 -1.9154 -1.5848 21 6 3.5722 -0.6587 -1.2765 22 6 2.0431 -0.7151 -1.2530 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8943 -0.5156 0.8886 27 1 1.7153 1.9451 0.9108 28 1 1.6456 1.9697 -0.8683 29 1 3.9666 0.9224 0.8156 30 1 3.9378 2.4634 -0.0747 31 1 5.7406 1.8632 -1.6865 32 1 5.9571 0.5469 -0.5082 33 1 5.9607 1.2691 -4.2531 34 1 6.7409 -0.8955 -5.6061 35 1 7.5223 -2.9459 -7.0885 36 1 3.9401 -1.1546 -2.1748 37 1 3.9679 -1.1635 -0.3953 38 1 1.7175 -1.7553 -1.2374 39 1 1.6464 -0.2230 -2.1410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:45 Heat of formation + Delta-G solvation = 8.336849 kcal Electronic energy + Delta-G solvation = -18241.349626 eV Core-core repulsion = 15568.719792 eV Total energy + Delta-G solvation = -2672.629834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24456 -39.69858 -35.87719 -35.09431 -31.80542 -31.42824 -30.72505 -29.28545 -27.04059 -24.56553 -23.88897 -22.50422 -21.14220 -20.65401 -20.52784 -18.93575 -17.32563 -16.92565 -16.21250 -15.79892 -15.42267 -15.24762 -14.87240 -14.41420 -14.26414 -13.92653 -13.54829 -13.50254 -13.44938 -13.18243 -12.95262 -12.78307 -12.70066 -12.45978 -12.13709 -12.10965 -11.78397 -11.54327 -11.49904 -11.17599 -11.14327 -11.05247 -9.22530 -9.10289 -8.62467 -8.36115 -6.10190 1.34049 1.41200 1.55329 1.89593 2.25291 2.59505 3.08509 3.26071 3.51360 3.85945 3.90526 3.92535 4.19096 4.32838 4.37221 4.54234 4.54583 4.63102 4.78727 4.82250 4.84882 4.89088 4.98238 5.03480 5.05268 5.16732 5.25625 5.27205 5.29403 5.36221 5.48677 5.55323 5.91954 6.03959 6.16259 6.24975 6.36366 6.47809 6.94077 7.11375 7.33013 7.61483 8.54874 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032910 B = 0.005113 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.591408 B = 5474.471359 C = 5963.193809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.105 4.105 4 C 0.051 3.949 5 N -0.542 5.542 6 C 0.151 3.849 7 C -0.077 4.077 8 C -0.182 4.182 9 C -0.327 4.327 10 C 0.186 3.814 11 C -0.488 4.488 12 H 0.072 0.928 13 C 0.025 3.975 14 N -0.836 5.836 15 Si 0.997 3.003 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.259 1.259 19 N -0.586 5.586 20 H 0.397 0.603 21 C 0.059 3.941 22 C -0.107 4.107 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.279 0.721 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.065 0.935 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 3.967 11.803 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.143 4.143 4 C -0.076 4.076 5 N -0.268 5.268 6 C 0.024 3.976 7 C -0.184 4.184 8 C -0.209 4.209 9 C -0.351 4.351 10 C 0.074 3.926 11 C -0.524 4.524 12 H 0.090 0.910 13 C -0.188 4.188 14 N -0.464 5.464 15 Si 0.818 3.182 16 H -0.190 1.190 17 H -0.195 1.195 18 H -0.183 1.183 19 N -0.189 5.189 20 H 0.232 0.768 21 C -0.069 4.069 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.127 0.873 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.392 4.252 11.306 15.300 hybrid contribution 0.839 -1.306 0.327 1.587 sum -8.552 2.946 11.633 14.736 Atomic orbital electron populations 1.21764 0.93821 1.01954 1.02230 1.21172 0.96592 0.96180 0.96953 1.21627 0.93595 0.96365 1.02672 1.22202 0.96813 0.99091 0.89484 1.62091 1.12108 1.14317 1.38266 1.20267 0.86660 0.97682 0.92986 1.19729 1.17421 0.84951 0.96254 1.20471 1.08798 0.97874 0.93719 1.21734 1.20652 0.92622 1.00045 1.18342 0.97225 0.94034 0.82957 1.18763 1.44330 0.93340 0.95922 0.90988 1.26619 0.93470 1.03719 0.94964 1.69914 1.37929 1.36172 1.02397 0.84988 0.78605 0.76039 0.78595 1.19036 1.19510 1.18331 1.41953 1.59557 1.08543 1.08799 0.76769 1.22029 0.96448 0.89044 0.99421 1.21616 0.93605 1.00403 0.98868 0.92856 0.92604 0.91334 0.91555 0.89455 0.91816 0.95143 0.89840 0.89125 0.95082 0.87270 0.85453 0.91061 0.92694 0.96154 0.91682 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.21 71.98 0.66 -1.78 16 2 C -0.09 -1.93 2.79 -10.71 -0.03 -1.96 16 3 C -0.10 -2.16 5.38 30.65 0.16 -2.00 16 4 C 0.05 1.25 5.42 86.33 0.47 1.72 16 5 N -0.54 -17.44 4.80 -900.94 -4.32 -21.77 16 6 C 0.15 5.30 5.81 85.56 0.50 5.80 16 7 C -0.08 -3.47 5.08 41.36 0.21 -3.26 16 8 C -0.18 -9.36 10.69 22.00 0.24 -9.12 16 9 C -0.33 -19.16 9.80 22.89 0.22 -18.93 16 10 C 0.19 10.47 6.89 38.95 0.27 10.74 16 11 C -0.49 -27.18 9.45 23.13 0.22 -26.96 16 12 H 0.07 3.75 7.85 -2.91 -0.02 3.72 16 13 C 0.02 1.30 5.50 85.28 0.47 1.77 16 14 N -0.84 -46.76 10.26 21.86 0.22 -46.53 16 15 Si 1.00 40.13 29.56 68.60 2.03 42.16 16 16 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 19 N -0.59 -27.80 4.90 -175.02 -0.86 -28.66 16 20 H 0.40 16.61 8.95 -92.70 -0.83 15.78 16 21 C 0.06 1.97 4.87 86.32 0.42 2.39 16 22 C -0.11 -2.97 5.38 30.64 0.16 -2.81 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 31 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 34 H 0.13 8.00 5.70 -2.91 -0.02 7.98 16 35 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 36 H 0.05 2.30 5.79 -2.38 -0.01 2.29 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -63.31 307.51 1.24 -62.07 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.19 Total: 37.12 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 3.97 Total: -44.40 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -4.96 Total: -96.95 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -63.31 1.24 -62.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.412 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds