Wall clock time and date at job start Mon Mar 30 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47199 * 2 1 4 4 C 1.53000 * 109.46797 * 239.99647 * 2 1 3 5 5 C 1.50701 * 109.46975 * 120.00350 * 2 1 3 6 6 C 1.34854 * 125.96627 * 74.99577 * 5 2 1 7 7 N 1.36308 * 106.68822 * 179.75029 * 6 5 2 8 8 C 1.35419 * 107.40248 * 359.95354 * 7 6 5 9 9 N 1.30099 * 108.62697 * 0.06348 * 8 7 6 10 10 C 1.51039 * 123.98510 * 180.08663 * 8 7 6 11 11 H 1.09002 * 109.75655 * 256.25350 * 10 8 7 12 12 C 1.50702 * 109.71820 * 135.63083 * 10 8 7 13 13 H 1.08004 * 120.00376 * 241.25404 * 12 10 8 14 14 C 1.37871 * 119.99890 * 61.24692 * 12 10 8 15 15 N 1.31518 * 120.00289 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00254 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47450 * 89.99909 * 16 14 12 18 18 H 1.48494 * 109.47265 * 210.00279 * 16 14 12 19 19 H 1.48503 * 109.46841 * 329.99926 * 16 14 12 20 20 C 1.53398 * 108.20935 * 15.95419 * 10 8 7 21 21 C 1.53153 * 109.23759 * 311.17029 * 20 10 8 22 22 C 1.46471 * 127.77630 * 179.89786 * 7 6 5 23 23 H 1.09003 * 109.46794 * 300.00015 * 1 2 3 24 24 H 1.09000 * 109.46919 * 59.99676 * 1 2 3 25 25 H 1.08992 * 109.47505 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46849 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47449 * 299.99999 * 3 2 1 28 28 H 1.09003 * 109.47260 * 60.00270 * 3 2 1 29 29 H 1.08995 * 109.47574 * 300.00769 * 4 2 1 30 30 H 1.09008 * 109.47049 * 60.00399 * 4 2 1 31 31 H 1.09000 * 109.46830 * 179.97438 * 4 2 1 32 32 H 1.08004 * 126.65390 * 359.71458 * 6 5 2 33 33 H 0.97000 * 120.00171 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.51358 * 191.24259 * 20 10 8 35 35 H 1.09004 * 109.51159 * 71.09535 * 20 10 8 36 36 H 1.09003 * 109.46692 * 309.48022 * 21 20 10 37 37 H 1.08997 * 109.46723 * 189.48867 * 21 20 10 38 38 H 1.09007 * 109.58322 * 316.95570 * 22 7 6 39 39 H 1.09001 * 109.58566 * 77.22871 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 2.0299 -2.0440 1.4315 7 7 2.5738 -2.2551 2.6634 8 6 2.8933 -1.0439 3.1780 9 7 2.5658 -0.1265 2.3157 10 6 3.5253 -0.8433 4.5351 11 1 2.7751 -0.4895 5.2422 12 6 4.6416 0.1639 4.4322 13 1 5.6532 -0.1241 4.6778 14 6 4.3716 1.4529 4.0244 15 7 3.1398 1.8038 3.7257 16 14 5.7554 2.7013 3.8962 17 1 6.3379 2.6562 2.5309 18 1 5.2215 4.0612 4.1619 19 1 6.8070 2.3787 4.8940 20 6 4.0862 -2.1909 5.0066 21 6 3.0146 -3.2715 4.8345 22 6 2.7893 -3.5353 3.3417 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6765 -1.7489 -1.2493 30 1 1.6766 -0.2075 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 1.6669 -2.7982 0.7490 33 1 2.9498 2.7109 3.4392 34 1 4.3669 -2.1208 6.0575 35 1 4.9622 -2.4490 4.4115 36 1 2.0827 -2.9345 5.2885 37 1 3.3438 -4.1902 5.3201 38 1 1.9127 -4.1700 3.2111 39 1 3.6643 -4.0296 2.9197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:32 Heat of formation + Delta-G solvation = 50.366656 kcal Electronic energy + Delta-G solvation = -19189.965193 eV Core-core repulsion = 16519.157908 eV Total energy + Delta-G solvation = -2670.807285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09391 -36.75242 -34.89692 -33.34025 -30.96741 -28.54980 -27.52628 -26.72301 -26.25753 -24.96731 -22.28530 -21.10034 -20.92602 -17.89368 -17.71156 -16.49683 -15.56299 -14.90904 -14.35576 -14.15097 -13.71806 -13.48226 -13.06072 -12.89313 -12.71163 -12.59389 -12.31491 -11.85853 -11.55860 -11.35109 -11.09568 -11.03680 -10.78942 -10.49290 -10.38134 -10.32143 -10.26571 -10.18041 -9.98625 -9.42056 -9.15958 -8.38317 -8.16971 -7.86699 -6.88896 -5.71464 -3.83116 3.22230 3.43493 3.50045 3.51377 3.85633 4.54373 4.69254 5.13943 5.27985 5.32034 5.45933 5.50734 5.55965 5.69267 5.77074 5.94575 5.97082 6.04486 6.06825 6.15599 6.21307 6.23979 6.34752 6.42857 6.48529 6.58250 6.59404 6.67295 6.76430 6.88153 6.97910 7.15473 7.29648 7.49322 7.69912 7.99410 8.09697 8.35120 8.62962 9.10937 9.78428 9.83645 11.29380 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.011710 C = 0.007411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.195127 B = 2390.573770 C = 3777.036198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.021 3.979 3 C -0.121 4.121 4 C -0.132 4.132 5 C -0.008 4.008 6 C -0.104 4.104 7 N -0.480 5.480 8 C 0.258 3.742 9 N -0.404 5.404 10 C 0.129 3.871 11 H 0.046 0.954 12 C -0.546 4.546 13 H 0.055 0.945 14 C 0.083 3.917 15 N -0.809 5.809 16 Si 0.880 3.120 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.115 4.115 21 C -0.134 4.134 22 C 0.113 3.887 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.147 0.853 33 H 0.256 0.744 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -8.070 -4.351 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.020 3.980 3 C -0.179 4.179 4 C -0.190 4.190 5 C -0.139 4.139 6 C -0.235 4.235 7 N -0.165 5.165 8 C -0.005 4.005 9 N -0.118 5.118 10 C 0.108 3.892 11 H 0.064 0.936 12 C -0.584 4.584 13 H 0.073 0.927 14 C -0.127 4.127 15 N -0.441 5.441 16 Si 0.709 3.291 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.153 4.153 21 C -0.171 4.171 22 C -0.010 4.010 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.701 -7.191 -4.260 9.141 hybrid contribution 0.609 -0.409 -0.499 0.888 sum -3.092 -7.600 -4.760 9.485 Atomic orbital electron populations 1.21812 0.95025 1.00853 1.01074 1.18650 0.94012 0.95042 0.90272 1.21594 1.01122 0.94529 1.00629 1.21845 1.01052 0.99533 0.96584 1.20748 1.06026 0.89917 0.97211 1.21703 1.12936 0.98241 0.90646 1.45818 1.48285 1.07919 1.14527 1.25147 0.98666 0.77326 0.99342 1.70789 1.13448 1.28723 0.98872 1.17460 0.95227 0.91380 0.85103 0.93629 1.20620 0.92995 0.94336 1.50402 0.92659 1.24869 0.94925 0.98075 0.94820 1.70080 1.17678 1.17358 1.38962 0.86809 0.82987 0.81205 0.78133 1.20997 1.21429 1.20270 1.21753 0.96907 0.95398 1.01212 1.21911 1.01288 1.00268 0.93659 1.21647 1.00819 0.84774 0.93787 0.92564 0.93370 0.93453 0.92998 0.94649 0.91211 0.93288 0.93203 0.92906 0.83589 0.93383 0.91778 0.92550 0.91445 0.91135 0.91231 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.46 37.16 0.31 -1.80 16 2 C 0.02 0.40 0.95 -155.66 -0.15 0.25 16 3 C -0.12 -2.38 8.03 37.15 0.30 -2.08 16 4 C -0.13 -2.06 8.19 37.16 0.30 -1.76 16 5 C -0.01 -0.18 5.53 -82.72 -0.46 -0.64 16 6 C -0.10 -2.11 10.90 -16.76 -0.18 -2.29 16 7 N -0.48 -10.11 3.13 -113.75 -0.36 -10.46 16 8 C 0.26 6.47 6.84 -155.24 -1.06 5.41 16 9 N -0.40 -10.61 7.64 -6.88 -0.05 -10.66 16 10 C 0.13 3.20 2.48 -92.55 -0.23 2.97 16 11 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 12 C -0.55 -15.08 8.53 -34.44 -0.29 -15.37 16 13 H 0.06 1.51 7.75 -52.48 -0.41 1.11 16 14 C 0.08 2.32 5.11 -17.82 -0.09 2.23 16 15 N -0.81 -23.38 10.64 55.43 0.59 -22.79 16 16 Si 0.88 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 C -0.11 -2.24 5.23 -26.45 -0.14 -2.38 16 21 C -0.13 -2.11 5.94 -26.51 -0.16 -2.27 16 22 C 0.11 1.83 6.98 -3.92 -0.03 1.80 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.54 8.09 -51.93 -0.42 1.12 16 29 H 0.05 0.69 7.50 -51.93 -0.39 0.30 16 30 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.15 2.47 7.67 -52.48 -0.40 2.07 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -30.83 308.68 -8.73 -39.56 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.67 Total: -1.20 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.87 Total: -15.91 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.18 Total: -43.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.83 -8.73 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.928 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds