Wall clock time and date at job start Mon Mar 30 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47132 * 2 1 4 4 C 1.52996 * 109.46794 * 240.00050 * 2 1 3 5 5 C 1.50698 * 109.47015 * 120.00179 * 2 1 3 6 6 C 1.34849 * 125.96393 * 75.00077 * 5 2 1 7 7 N 1.36320 * 106.68906 * 179.97438 * 6 5 2 8 8 C 1.35422 * 107.39895 * 0.04688 * 7 6 5 9 9 N 1.30092 * 108.62439 * 359.93691 * 8 7 6 10 10 C 1.51039 * 123.98198 * 179.90166 * 8 7 6 11 11 H 1.08997 * 109.71340 * 103.74318 * 10 8 7 12 12 C 1.50702 * 109.71226 * 224.33627 * 10 8 7 13 13 H 1.08007 * 119.99471 * 120.00250 * 12 10 8 14 14 C 1.37871 * 120.00479 * 300.00026 * 12 10 8 15 15 N 1.31515 * 119.99892 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00109 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47039 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47010 * 120.00192 * 16 14 12 19 19 H 1.48503 * 109.47189 * 239.99978 * 16 14 12 20 20 C 1.53398 * 108.21139 * 344.06182 * 10 8 7 21 21 C 1.53412 * 109.31775 * 48.82235 * 20 10 8 22 22 C 1.46471 * 127.77728 * 180.02562 * 7 6 5 23 23 H 1.09005 * 109.46861 * 299.99824 * 1 2 3 24 24 H 1.09004 * 109.47265 * 59.99863 * 1 2 3 25 25 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47211 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47157 * 300.00202 * 3 2 1 28 28 H 1.09003 * 109.47289 * 59.99820 * 3 2 1 29 29 H 1.09006 * 109.47306 * 299.99923 * 4 2 1 30 30 H 1.09004 * 109.47620 * 59.99779 * 4 2 1 31 31 H 1.09004 * 109.47431 * 180.02562 * 4 2 1 32 32 H 1.08002 * 126.65970 * 359.94301 * 6 5 2 33 33 H 0.97004 * 120.00384 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.50425 * 168.74650 * 20 10 8 35 35 H 1.08996 * 109.50734 * 288.83701 * 20 10 8 36 36 H 1.08997 * 109.64615 * 170.57774 * 21 20 10 37 37 H 1.08999 * 109.43087 * 50.50109 * 21 20 10 38 38 H 1.09002 * 109.58294 * 282.65416 * 22 7 6 39 39 H 1.09005 * 109.58543 * 42.92964 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 6 2.0299 -2.0439 1.4314 7 7 2.5692 -2.2547 2.6655 8 6 2.8840 -1.0432 3.1823 9 7 2.5606 -0.1262 2.3180 10 6 3.5063 -0.8419 4.5437 11 1 4.5666 -0.6147 4.4334 12 6 2.8149 0.2921 5.2559 13 1 2.3194 0.1152 6.1991 14 6 2.8151 1.5553 4.7036 15 7 3.4182 1.7707 3.5549 16 14 1.9576 2.9608 5.5862 17 1 1.3596 2.4602 6.8499 18 1 2.9440 4.0271 5.8943 19 1 0.8879 3.5123 4.7162 20 6 3.3354 -2.1385 5.3453 21 6 3.7845 -3.3285 4.4875 22 6 2.7852 -3.5349 3.3436 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6765 -0.2075 -2.1393 31 1 3.1299 -0.7217 -1.2491 32 1 1.6701 -2.7984 0.7476 33 1 3.4180 2.6594 3.1661 34 1 3.9444 -2.0912 6.2481 35 1 2.2876 -2.2618 5.6191 36 1 3.8247 -4.2283 5.1013 37 1 4.7729 -3.1256 4.0751 38 1 1.8398 -3.8998 3.7451 39 1 3.1856 -4.2605 2.6354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:34 Heat of formation + Delta-G solvation = 52.295202 kcal Electronic energy + Delta-G solvation = -19199.769247 eV Core-core repulsion = 16529.045590 eV Total energy + Delta-G solvation = -2670.723657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08255 -36.73975 -34.88088 -33.34569 -30.94875 -28.54841 -27.51656 -26.71814 -26.24749 -24.95854 -22.28031 -21.09875 -20.92064 -17.89187 -17.70377 -16.48637 -15.56180 -14.89529 -14.36563 -14.13977 -13.68167 -13.49729 -13.04614 -12.87583 -12.73428 -12.58953 -12.31224 -11.85286 -11.55447 -11.32438 -11.11385 -11.01436 -10.80405 -10.47377 -10.38093 -10.31205 -10.25970 -10.17297 -9.98603 -9.42101 -9.15602 -8.39875 -8.15526 -7.83088 -6.88143 -5.70023 -3.82360 3.22879 3.42244 3.50488 3.52431 3.86290 4.54758 4.70158 5.14262 5.28288 5.32669 5.46472 5.51243 5.56049 5.70061 5.77316 5.94895 5.97606 6.04770 6.07011 6.15642 6.22034 6.24537 6.34822 6.42871 6.48711 6.59726 6.59820 6.67455 6.77134 6.88639 6.98856 7.16222 7.30594 7.49721 7.70341 7.99729 8.10615 8.35404 8.63975 9.11360 9.78828 9.84841 11.29488 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.011767 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.122898 B = 2379.003394 C = 3769.364036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.021 3.979 3 C -0.119 4.119 4 C -0.131 4.131 5 C -0.009 4.009 6 C -0.104 4.104 7 N -0.480 5.480 8 C 0.257 3.743 9 N -0.401 5.401 10 C 0.128 3.872 11 H 0.045 0.955 12 C -0.546 4.546 13 H 0.056 0.944 14 C 0.081 3.919 15 N -0.805 5.805 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.286 1.286 20 C -0.114 4.114 21 C -0.134 4.134 22 C 0.113 3.887 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.146 0.854 33 H 0.255 0.745 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 -8.170 -5.168 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.020 3.980 3 C -0.176 4.176 4 C -0.189 4.189 5 C -0.140 4.140 6 C -0.235 4.235 7 N -0.166 5.166 8 C -0.005 4.005 9 N -0.115 5.115 10 C 0.108 3.892 11 H 0.063 0.937 12 C -0.584 4.584 13 H 0.074 0.926 14 C -0.129 4.129 15 N -0.437 5.437 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.153 4.153 21 C -0.171 4.171 22 C -0.010 4.010 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.585 -7.310 -5.184 9.101 hybrid contribution -0.803 -0.307 0.144 0.871 sum -2.387 -7.617 -5.039 9.440 Atomic orbital electron populations 1.21824 0.95126 1.00892 1.01045 1.18654 0.93946 0.95124 0.90296 1.21572 1.01320 0.94371 1.00382 1.21835 1.01004 0.99510 0.96565 1.20769 1.05950 0.89925 0.97340 1.21700 1.13315 0.98301 0.90223 1.45830 1.48717 1.07843 1.14174 1.25151 1.00041 0.77245 0.98107 1.70856 1.13225 1.28514 0.98894 1.17458 0.96192 0.91952 0.83573 0.93745 1.20652 1.38697 0.92233 1.06815 0.92602 1.24883 0.95352 0.98277 0.94350 1.70110 1.38791 1.20395 1.14374 0.86760 0.79597 0.83087 0.79776 1.20168 1.21299 1.21244 1.21795 1.00769 0.94446 0.98242 1.21961 0.98666 1.00028 0.96481 1.21645 0.99661 0.84769 0.94970 0.92657 0.93351 0.93412 0.92645 0.94745 0.91578 0.93334 0.93218 0.92891 0.83615 0.93443 0.91821 0.92541 0.91115 0.91457 0.91523 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.46 37.16 0.31 -1.87 16 2 C 0.02 0.39 0.95 -155.67 -0.15 0.24 16 3 C -0.12 -2.32 8.04 37.16 0.30 -2.02 16 4 C -0.13 -2.02 8.19 37.16 0.30 -1.71 16 5 C -0.01 -0.20 5.53 -82.72 -0.46 -0.66 16 6 C -0.10 -2.11 10.90 -16.76 -0.18 -2.29 16 7 N -0.48 -10.12 3.13 -113.74 -0.36 -10.48 16 8 C 0.26 6.46 6.84 -155.24 -1.06 5.39 16 9 N -0.40 -10.52 7.50 -6.88 -0.05 -10.57 16 10 C 0.13 3.20 2.51 -92.55 -0.23 2.97 16 11 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 12 C -0.55 -15.09 8.55 -34.44 -0.29 -15.38 16 13 H 0.06 1.53 7.75 -52.48 -0.41 1.13 16 14 C 0.08 2.28 5.11 -17.82 -0.09 2.18 16 15 N -0.81 -23.22 10.49 55.43 0.58 -22.64 16 16 Si 0.88 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 C -0.11 -2.24 5.24 -26.31 -0.14 -2.38 16 21 C -0.13 -2.11 5.97 -26.37 -0.16 -2.27 16 22 C 0.11 1.83 6.97 -3.91 -0.03 1.81 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 29 H 0.05 0.68 7.50 -51.93 -0.39 0.29 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.15 2.47 7.67 -52.49 -0.40 2.07 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -30.79 308.45 -8.74 -39.53 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.67 Total: -1.29 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.87 Total: -15.99 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.17 Total: -43.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.79 -8.74 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.829 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds