Wall clock time and date at job start Mon Mar 30 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47132 * 2 1 4 4 C 1.52996 * 109.46794 * 240.00050 * 2 1 3 5 5 C 1.50698 * 109.47015 * 120.00179 * 2 1 3 6 6 C 1.34849 * 125.96393 * 75.00077 * 5 2 1 7 7 N 1.36320 * 106.68906 * 179.97438 * 6 5 2 8 8 C 1.35422 * 107.39895 * 0.04688 * 7 6 5 9 9 N 1.30092 * 108.62439 * 359.93691 * 8 7 6 10 10 C 1.51039 * 123.98198 * 179.90166 * 8 7 6 11 11 H 1.08997 * 109.71340 * 103.74318 * 10 8 7 12 12 C 1.50702 * 109.71226 * 224.33627 * 10 8 7 13 13 H 1.08007 * 119.99471 * 120.00250 * 12 10 8 14 14 C 1.37871 * 120.00479 * 300.00026 * 12 10 8 15 15 N 1.31515 * 119.99892 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00109 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47039 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47010 * 120.00192 * 16 14 12 19 19 H 1.48503 * 109.47189 * 239.99978 * 16 14 12 20 20 C 1.53398 * 108.21139 * 344.06182 * 10 8 7 21 21 C 1.53412 * 109.31775 * 48.82235 * 20 10 8 22 22 C 1.46471 * 127.77728 * 180.02562 * 7 6 5 23 23 H 1.09005 * 109.46861 * 299.99824 * 1 2 3 24 24 H 1.09004 * 109.47265 * 59.99863 * 1 2 3 25 25 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47211 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47157 * 300.00202 * 3 2 1 28 28 H 1.09003 * 109.47289 * 59.99820 * 3 2 1 29 29 H 1.09006 * 109.47306 * 299.99923 * 4 2 1 30 30 H 1.09004 * 109.47620 * 59.99779 * 4 2 1 31 31 H 1.09004 * 109.47431 * 180.02562 * 4 2 1 32 32 H 1.08002 * 126.65970 * 359.94301 * 6 5 2 33 33 H 0.97004 * 120.00384 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.50425 * 168.74650 * 20 10 8 35 35 H 1.08996 * 109.50734 * 288.83701 * 20 10 8 36 36 H 1.08997 * 109.64615 * 170.57774 * 21 20 10 37 37 H 1.08999 * 109.43087 * 50.50109 * 21 20 10 38 38 H 1.09002 * 109.58294 * 282.65416 * 22 7 6 39 39 H 1.09005 * 109.58543 * 42.92964 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 6 2.0299 -2.0439 1.4314 7 7 2.5692 -2.2547 2.6655 8 6 2.8840 -1.0432 3.1823 9 7 2.5606 -0.1262 2.3180 10 6 3.5063 -0.8419 4.5437 11 1 4.5666 -0.6147 4.4334 12 6 2.8149 0.2921 5.2559 13 1 2.3194 0.1152 6.1991 14 6 2.8151 1.5553 4.7036 15 7 3.4182 1.7707 3.5549 16 14 1.9576 2.9608 5.5862 17 1 1.3596 2.4602 6.8499 18 1 2.9440 4.0271 5.8943 19 1 0.8879 3.5123 4.7162 20 6 3.3354 -2.1385 5.3453 21 6 3.7845 -3.3285 4.4875 22 6 2.7852 -3.5349 3.3436 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6765 -0.2075 -2.1393 31 1 3.1299 -0.7217 -1.2491 32 1 1.6701 -2.7984 0.7476 33 1 3.4180 2.6594 3.1661 34 1 3.9444 -2.0912 6.2481 35 1 2.2876 -2.2618 5.6191 36 1 3.8247 -4.2283 5.1013 37 1 4.7729 -3.1256 4.0751 38 1 1.8398 -3.8998 3.7451 39 1 3.1856 -4.2605 2.6354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:34 Heat of formation + Delta-G solvation = 35.824993 kcal Electronic energy + Delta-G solvation = -19200.483449 eV Core-core repulsion = 16529.045590 eV Total energy + Delta-G solvation = -2671.437859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.72356 -38.20864 -36.40054 -35.20552 -32.82400 -30.19904 -29.11727 -27.99762 -27.71833 -26.79806 -23.97605 -22.68635 -22.48510 -19.53430 -19.23329 -18.43105 -17.19025 -16.57013 -16.21142 -15.61110 -15.16603 -14.96381 -14.64655 -14.39914 -14.37149 -14.17948 -13.83207 -13.24793 -13.11813 -12.82532 -12.82196 -12.67753 -12.45973 -12.33643 -11.95208 -11.77125 -11.70492 -11.60445 -11.58432 -11.33278 -11.01417 -10.44444 -9.83300 -9.66027 -8.55631 -7.83119 -6.00449 1.39848 1.42995 1.51395 1.61037 2.38119 2.50991 2.91753 3.43064 3.82564 3.89297 4.01161 4.11256 4.22373 4.29881 4.42417 4.44880 4.60780 4.72569 4.74949 4.78589 4.86087 4.88036 4.99715 5.05907 5.07556 5.10218 5.15751 5.23367 5.31305 5.34611 5.50193 5.60987 5.62701 5.72324 5.90847 5.95764 6.34156 6.48577 6.81504 7.07157 7.63372 8.13783 9.14146 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.011767 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.122898 B = 2379.003394 C = 3769.364036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.109 4.109 4 C -0.121 4.121 5 C -0.043 4.043 6 C -0.086 4.086 7 N -0.478 5.478 8 C 0.219 3.781 9 N -0.447 5.447 10 C 0.122 3.878 11 H 0.008 0.992 12 C -0.563 4.563 13 H 0.050 0.950 14 C 0.036 3.964 15 N -0.826 5.826 16 Si 0.934 3.066 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.294 1.294 20 C -0.108 4.108 21 C -0.124 4.124 22 C 0.104 3.896 23 H 0.022 0.978 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.188 0.812 33 H 0.249 0.751 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 -10.645 -6.327 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.014 3.986 3 C -0.167 4.167 4 C -0.179 4.179 5 C -0.173 4.173 6 C -0.219 4.219 7 N -0.162 5.162 8 C -0.045 4.045 9 N -0.162 5.162 10 C 0.102 3.898 11 H 0.026 0.974 12 C -0.601 4.601 13 H 0.068 0.932 14 C -0.171 4.171 15 N -0.458 5.458 16 Si 0.761 3.239 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.220 1.220 20 C -0.146 4.146 21 C -0.161 4.161 22 C -0.018 4.018 23 H 0.042 0.958 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.661 -9.815 -6.314 11.970 hybrid contribution -0.457 0.439 0.491 0.802 sum -3.117 -9.376 -5.823 11.469 Atomic orbital electron populations 1.21752 0.93609 1.01845 1.00854 1.18841 0.95129 0.94056 0.90525 1.21456 0.99541 0.95809 0.99846 1.21744 1.00069 1.00487 0.95588 1.21448 1.06802 0.91300 0.97766 1.22297 1.11078 0.98474 0.90032 1.46006 1.47474 1.08438 1.14320 1.24760 1.02299 0.79024 0.98387 1.70691 1.14189 1.30786 1.00578 1.17337 0.93634 0.93925 0.84879 0.97444 1.20992 1.38662 0.93639 1.06854 0.93219 1.25532 0.96156 1.00422 0.94991 1.70282 1.39941 1.20144 1.15440 0.85902 0.78513 0.80705 0.78765 1.19455 1.20533 1.22046 1.21669 1.00697 0.93691 0.98533 1.21926 0.97949 0.99896 0.96365 1.22071 1.00925 0.83155 0.95648 0.95841 0.90491 0.91838 0.95191 0.91466 0.95675 0.91409 0.90637 0.94304 0.79469 0.94189 0.91029 0.93141 0.86532 0.92246 0.89634 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.46 71.98 0.61 -3.26 16 2 C 0.02 0.56 0.95 -52.93 -0.05 0.51 16 3 C -0.11 -4.33 8.04 71.98 0.58 -3.75 16 4 C -0.12 -3.36 8.19 71.98 0.59 -2.77 16 5 C -0.04 -1.89 5.53 41.40 0.23 -1.66 16 6 C -0.09 -3.31 10.90 83.22 0.91 -2.40 16 7 N -0.48 -19.40 3.13 -513.76 -1.61 -21.01 16 8 C 0.22 11.20 6.84 138.23 0.95 12.14 16 9 N -0.45 -24.27 7.50 -175.70 -1.32 -25.59 16 10 C 0.12 6.33 2.51 -12.04 -0.03 6.30 16 11 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 12 C -0.56 -32.37 8.55 25.60 0.22 -32.15 16 13 H 0.05 2.82 7.75 -2.91 -0.02 2.79 16 14 C 0.04 2.12 5.11 84.65 0.43 2.56 16 15 N -0.83 -50.25 10.49 21.45 0.22 -50.03 16 16 Si 0.93 46.49 29.54 68.60 2.03 48.52 16 17 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 20 C -0.11 -4.18 5.24 30.87 0.16 -4.02 16 21 C -0.12 -3.58 5.97 30.83 0.18 -3.40 16 22 C 0.10 2.98 6.97 86.48 0.60 3.58 16 23 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.02 1.16 8.09 -2.39 -0.02 1.14 16 29 H 0.07 1.61 7.50 -2.38 -0.02 1.59 16 30 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.19 5.45 7.67 -2.91 -0.02 5.43 16 33 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 36 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 1.82 8.12 -2.39 -0.02 1.81 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -72.07 308.45 5.70 -66.37 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.00 Total: 10.05 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 5.38 Total: -28.31 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -2.70 Total: -96.63 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -72.07 5.70 -66.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.197 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds