Wall clock time and date at job start Mon Mar 30 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34858 * 126.65264 * 2 1 4 4 C 1.50700 * 125.96656 * 359.97352 * 3 2 1 5 5 C 1.52995 * 109.47007 * 120.00127 * 4 3 2 6 6 C 1.53002 * 109.46952 * 239.99942 * 4 3 2 7 7 N 1.34294 * 108.07097 * 179.97438 * 3 2 1 8 8 C 1.30040 * 109.22848 * 0.02562 * 7 3 2 9 9 N 1.35477 * 108.62632 * 0.02562 * 8 7 3 10 10 C 1.46473 * 124.83751 * 179.91814 * 9 8 7 11 11 C 1.53261 * 108.79842 * 342.91293 * 10 9 8 12 12 C 1.53144 * 109.49128 * 50.38080 * 11 10 9 13 13 C 1.51042 * 127.43714 * 180.14320 * 8 7 3 14 14 H 1.09002 * 109.71321 * 283.67471 * 13 8 7 15 15 C 1.50697 * 109.71449 * 44.26874 * 13 8 7 16 16 H 1.08001 * 120.00722 * 34.58931 * 15 13 8 17 17 C 1.37881 * 120.00264 * 214.59226 * 15 13 8 18 18 N 1.31512 * 120.00558 * 174.68180 * 17 15 13 19 19 Si 1.86804 * 119.99753 * 354.95581 * 17 15 13 20 20 H 1.48500 * 109.47080 * 94.86534 * 19 17 15 21 21 H 1.48500 * 109.47262 * 214.86656 * 19 17 15 22 22 H 1.48502 * 109.46851 * 334.86634 * 19 17 15 23 23 H 1.08999 * 109.47413 * 270.02751 * 1 2 3 24 24 H 1.09003 * 109.47145 * 30.02736 * 1 2 3 25 25 H 1.08998 * 109.46746 * 150.02539 * 1 2 3 26 26 H 1.08999 * 109.46862 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47509 * 60.00152 * 5 4 3 28 28 H 1.08997 * 109.47218 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47192 * 299.99832 * 5 4 3 30 30 H 1.08990 * 109.47336 * 300.00287 * 6 4 3 31 31 H 1.09004 * 109.47038 * 60.00311 * 6 4 3 32 32 H 1.09000 * 109.46821 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.58583 * 223.11810 * 10 9 8 34 34 H 1.09006 * 109.70028 * 102.77771 * 10 9 8 35 35 H 1.09006 * 109.46506 * 290.37991 * 11 10 9 36 36 H 1.08993 * 109.46961 * 170.39211 * 11 10 9 37 37 H 1.09006 * 109.50820 * 170.59045 * 12 11 10 38 38 H 1.09000 * 109.50785 * 50.44881 * 12 11 10 39 39 H 0.96994 * 120.00479 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3121 1.0819 0.0000 4 6 1.8619 2.5201 -0.0006 5 6 2.3974 3.2226 1.2486 6 6 2.3984 3.2219 -1.2498 7 7 3.5850 0.6540 0.0006 8 6 3.5997 -0.6463 0.0004 9 7 2.3208 -1.0935 -0.0009 10 6 1.9278 -2.5045 -0.0032 11 6 3.1315 -3.3517 -0.4302 12 6 4.3541 -2.9599 0.4046 13 6 4.8093 -1.5509 0.0038 14 1 5.2520 -1.5766 -0.9919 15 6 5.8218 -1.0420 0.9972 16 1 5.4920 -0.5735 1.9127 17 6 7.1694 -1.1744 0.7374 18 7 8.0520 -0.6386 1.5519 19 14 7.7414 -2.1085 -0.7758 20 1 7.9796 -1.1526 -1.8870 21 1 9.0015 -2.8302 -0.4651 22 1 6.6979 -3.0854 -1.1783 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5134 26 1 0.7726 2.5598 -0.0014 27 1 3.4867 3.1829 1.2491 28 1 2.0715 4.2627 1.2485 29 1 2.0153 2.7226 2.1386 30 1 3.4876 3.1821 -1.2494 31 1 2.0168 2.7214 -2.1398 32 1 2.0724 4.2620 -1.2504 33 1 1.1080 -2.6543 -0.7058 34 1 1.6101 -2.7991 0.9970 35 1 3.3416 -3.1783 -1.4857 36 1 2.9072 -4.4067 -0.2731 37 1 5.1618 -3.6689 0.2223 38 1 4.0912 -2.9706 1.4624 39 1 9.0000 -0.7320 1.3693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:57 Heat of formation + Delta-G solvation = 32.223104 kcal Electronic energy + Delta-G solvation = -18831.168058 eV Core-core repulsion = 16159.574010 eV Total energy + Delta-G solvation = -2671.594048 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.63938 -36.58024 -34.41863 -33.58151 -31.98300 -30.20912 -28.96191 -26.67306 -25.83140 -25.06976 -22.61369 -21.57948 -20.51780 -18.63459 -18.21023 -16.95089 -15.78158 -15.29435 -14.71696 -14.34680 -13.89336 -13.72235 -13.43028 -12.85491 -12.69135 -12.63352 -12.57397 -12.51280 -12.34007 -11.75125 -11.68460 -11.30094 -10.90909 -10.82895 -10.67892 -10.57219 -10.44601 -10.32446 -9.99373 -9.76904 -9.26492 -8.83504 -8.67542 -8.51568 -7.23702 -6.04874 -4.03068 2.72721 3.27719 3.35153 3.37688 3.44345 4.00579 4.41759 4.92665 5.04803 5.10262 5.14735 5.30158 5.36510 5.38134 5.44450 5.62579 5.66761 5.74854 5.76314 5.91397 5.97872 6.03237 6.04227 6.08906 6.17235 6.34212 6.35536 6.42893 6.48038 6.64008 6.72620 6.81316 6.93363 7.12446 7.20007 7.54950 7.66637 8.04506 8.53777 9.02330 9.15697 9.55204 11.08413 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.008704 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.265166 B = 3216.006405 C = 4120.510501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.060 4.060 3 C 0.001 3.999 4 C -0.003 4.003 5 C -0.138 4.138 6 C -0.138 4.138 7 N -0.467 5.467 8 C 0.258 3.742 9 N -0.466 5.466 10 C 0.112 3.888 11 C -0.139 4.139 12 C -0.122 4.122 13 C 0.096 3.904 14 H 0.053 0.947 15 C -0.489 4.489 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.893 5.893 19 Si 0.870 3.130 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.262 1.262 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 -1.372 -4.667 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.174 4.174 3 C -0.129 4.129 4 C -0.023 4.023 5 C -0.195 4.195 6 C -0.195 4.195 7 N -0.183 5.183 8 C -0.005 4.005 9 N -0.150 5.150 10 C -0.011 4.011 11 C -0.176 4.176 12 C -0.161 4.161 13 C 0.075 3.925 14 H 0.071 0.929 15 C -0.527 4.527 16 H 0.094 0.906 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.698 3.302 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.187 1.187 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.817 -0.971 -4.630 14.605 hybrid contribution -0.344 -1.100 -0.700 1.348 sum -14.162 -2.070 -5.330 15.272 Atomic orbital electron populations 1.20042 0.88473 1.02089 1.01635 1.20563 0.93518 0.87222 1.16053 1.20424 0.89543 0.94128 1.08760 1.19303 0.98350 0.88885 0.95761 1.21736 1.02669 0.98392 0.96734 1.21744 1.02477 0.98541 0.96754 1.70008 1.19879 1.08659 1.19796 1.24224 0.84839 0.90777 1.00668 1.45434 1.07451 1.05752 1.56358 1.21756 0.98370 0.79135 1.01844 1.21999 0.95549 0.98752 1.01335 1.22110 0.95370 0.99261 0.99366 1.17932 0.88174 0.87839 0.98515 0.92914 1.20606 0.88865 1.38442 1.04786 0.90591 1.24981 0.96574 0.94944 0.96180 1.69895 1.01545 1.43734 1.37873 0.86970 0.78442 0.80778 0.84059 1.20201 1.21275 1.18695 0.91953 0.90841 0.92692 0.91337 0.91486 0.93376 0.93317 0.91669 0.93467 0.93307 0.90702 0.90774 0.91560 0.90621 0.91292 0.91699 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 9.85 36.01 0.35 -0.46 16 2 C -0.06 -1.08 6.98 -81.80 -0.57 -1.65 16 3 C 0.00 0.02 5.61 -82.71 -0.46 -0.44 16 4 C 0.00 -0.06 3.28 -91.77 -0.30 -0.36 16 5 C -0.14 -2.21 9.17 37.16 0.34 -1.87 16 6 C -0.14 -2.10 9.18 37.16 0.34 -1.75 16 7 N -0.47 -11.28 11.11 -6.88 -0.08 -11.36 16 8 C 0.26 5.98 6.99 -155.23 -1.08 4.89 16 9 N -0.47 -8.91 3.14 -109.18 -0.34 -9.25 16 10 C 0.11 1.65 6.71 -3.92 -0.03 1.62 16 11 C -0.14 -2.10 5.94 -26.52 -0.16 -2.26 16 12 C -0.12 -2.41 5.15 -26.45 -0.14 -2.54 16 13 C 0.10 2.30 2.00 -92.55 -0.19 2.11 16 14 H 0.05 1.29 5.61 -51.93 -0.29 1.00 16 15 C -0.49 -13.88 8.76 -34.44 -0.30 -14.18 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 19 Si 0.87 21.11 26.72 -169.99 -4.54 16.56 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.26 -5.84 5.93 56.52 0.33 -5.50 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.82 7.18 -51.93 -0.37 0.45 16 25 H 0.05 0.61 7.71 -51.93 -0.40 0.21 16 26 H 0.07 0.93 6.82 -51.93 -0.35 0.58 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.90 7.80 -51.93 -0.41 0.50 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.34 7.02 -51.93 -0.36 0.98 16 38 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -32.54 308.13 -8.29 -40.83 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.46 Total: 0.03 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.29 Total: -14.81 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.35 Total: -47.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.54 Total: 16.56 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.54 -8.29 -40.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.053 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds