Wall clock time and date at job start Mon Mar 30 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34858 * 126.65264 * 2 1 4 4 C 1.50700 * 125.96656 * 359.97352 * 3 2 1 5 5 C 1.52995 * 109.47007 * 120.00127 * 4 3 2 6 6 C 1.53002 * 109.46952 * 239.99942 * 4 3 2 7 7 N 1.34294 * 108.07097 * 179.97438 * 3 2 1 8 8 C 1.30040 * 109.22848 * 0.02562 * 7 3 2 9 9 N 1.35477 * 108.62632 * 0.02562 * 8 7 3 10 10 C 1.46473 * 124.83751 * 179.91814 * 9 8 7 11 11 C 1.53261 * 108.79842 * 342.91293 * 10 9 8 12 12 C 1.53144 * 109.49128 * 50.38080 * 11 10 9 13 13 C 1.51042 * 127.43714 * 180.14320 * 8 7 3 14 14 H 1.09002 * 109.71321 * 283.67471 * 13 8 7 15 15 C 1.50697 * 109.71449 * 44.26874 * 13 8 7 16 16 H 1.08001 * 120.00722 * 34.58931 * 15 13 8 17 17 C 1.37881 * 120.00264 * 214.59226 * 15 13 8 18 18 N 1.31512 * 120.00558 * 174.68180 * 17 15 13 19 19 Si 1.86804 * 119.99753 * 354.95581 * 17 15 13 20 20 H 1.48500 * 109.47080 * 94.86534 * 19 17 15 21 21 H 1.48500 * 109.47262 * 214.86656 * 19 17 15 22 22 H 1.48502 * 109.46851 * 334.86634 * 19 17 15 23 23 H 1.08999 * 109.47413 * 270.02751 * 1 2 3 24 24 H 1.09003 * 109.47145 * 30.02736 * 1 2 3 25 25 H 1.08998 * 109.46746 * 150.02539 * 1 2 3 26 26 H 1.08999 * 109.46862 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47509 * 60.00152 * 5 4 3 28 28 H 1.08997 * 109.47218 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47192 * 299.99832 * 5 4 3 30 30 H 1.08990 * 109.47336 * 300.00287 * 6 4 3 31 31 H 1.09004 * 109.47038 * 60.00311 * 6 4 3 32 32 H 1.09000 * 109.46821 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.58583 * 223.11810 * 10 9 8 34 34 H 1.09006 * 109.70028 * 102.77771 * 10 9 8 35 35 H 1.09006 * 109.46506 * 290.37991 * 11 10 9 36 36 H 1.08993 * 109.46961 * 170.39211 * 11 10 9 37 37 H 1.09006 * 109.50820 * 170.59045 * 12 11 10 38 38 H 1.09000 * 109.50785 * 50.44881 * 12 11 10 39 39 H 0.96994 * 120.00479 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3121 1.0819 0.0000 4 6 1.8619 2.5201 -0.0006 5 6 2.3974 3.2226 1.2486 6 6 2.3984 3.2219 -1.2498 7 7 3.5850 0.6540 0.0006 8 6 3.5997 -0.6463 0.0004 9 7 2.3208 -1.0935 -0.0009 10 6 1.9278 -2.5045 -0.0032 11 6 3.1315 -3.3517 -0.4302 12 6 4.3541 -2.9599 0.4046 13 6 4.8093 -1.5509 0.0038 14 1 5.2520 -1.5766 -0.9919 15 6 5.8218 -1.0420 0.9972 16 1 5.4920 -0.5735 1.9127 17 6 7.1694 -1.1744 0.7374 18 7 8.0520 -0.6386 1.5519 19 14 7.7414 -2.1085 -0.7758 20 1 7.9796 -1.1526 -1.8870 21 1 9.0015 -2.8302 -0.4651 22 1 6.6979 -3.0854 -1.1783 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5134 26 1 0.7726 2.5598 -0.0014 27 1 3.4867 3.1829 1.2491 28 1 2.0715 4.2627 1.2485 29 1 2.0153 2.7226 2.1386 30 1 3.4876 3.1821 -1.2494 31 1 2.0168 2.7214 -2.1398 32 1 2.0724 4.2620 -1.2504 33 1 1.1080 -2.6543 -0.7058 34 1 1.6101 -2.7991 0.9970 35 1 3.3416 -3.1783 -1.4857 36 1 2.9072 -4.4067 -0.2731 37 1 5.1618 -3.6689 0.2223 38 1 4.0912 -2.9706 1.4624 39 1 9.0000 -0.7320 1.3693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:56 Heat of formation + Delta-G solvation = 11.603849 kcal Electronic energy + Delta-G solvation = -18832.062176 eV Core-core repulsion = 16159.574010 eV Total energy + Delta-G solvation = -2672.488166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.12294 -38.01891 -35.88337 -35.19588 -33.85512 -31.59122 -30.50524 -27.93823 -27.21907 -26.79030 -24.19713 -23.03635 -22.00375 -20.06405 -19.70419 -19.05628 -17.25111 -16.69748 -16.35301 -15.89969 -15.38841 -15.06577 -14.89514 -14.62443 -14.08367 -13.93223 -13.87492 -13.67135 -13.65414 -13.15190 -13.02610 -12.92772 -12.58534 -12.24865 -12.09637 -12.00265 -11.90720 -11.75090 -11.66594 -11.49996 -11.32958 -10.70848 -10.38331 -10.17207 -8.71545 -8.28052 -6.31321 1.27653 1.33071 1.35851 1.46309 2.08905 2.34464 2.40498 3.06721 3.68818 3.74449 3.90857 3.97476 4.13620 4.21203 4.23936 4.40355 4.43991 4.50739 4.57360 4.64222 4.73215 4.82602 4.84592 4.88513 4.92287 5.04095 5.05902 5.08224 5.16437 5.17638 5.24808 5.43503 5.45719 5.58566 5.60941 5.75863 6.16233 6.25761 6.55382 6.73904 7.30204 7.60716 8.90026 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.008704 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.265166 B = 3216.006405 C = 4120.510501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.041 4.041 3 C -0.037 4.037 4 C -0.004 4.004 5 C -0.132 4.132 6 C -0.131 4.131 7 N -0.519 5.519 8 C 0.212 3.788 9 N -0.461 5.461 10 C 0.102 3.898 11 C -0.129 4.129 12 C -0.118 4.118 13 C 0.095 3.905 14 H 0.045 0.955 15 C -0.489 4.489 16 H 0.014 0.986 17 C 0.010 3.990 18 N -0.950 5.950 19 Si 0.942 3.058 20 H -0.280 1.280 21 H -0.280 1.280 22 H -0.225 1.225 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.023 0.977 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.407 -3.145 -6.712 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.023 4.023 5 C -0.190 4.190 6 C -0.189 4.189 7 N -0.237 5.237 8 C -0.051 4.051 9 N -0.145 5.145 10 C -0.019 4.019 11 C -0.166 4.166 12 C -0.157 4.157 13 C 0.075 3.925 14 H 0.063 0.937 15 C -0.528 4.528 16 H 0.033 0.967 17 C -0.187 4.187 18 N -0.590 5.590 19 Si 0.765 3.235 20 H -0.206 1.206 21 H -0.205 1.205 22 H -0.148 1.148 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.612 -2.781 -6.675 19.039 hybrid contribution 0.719 -0.431 0.046 0.840 sum -16.893 -3.211 -6.629 18.429 Atomic orbital electron populations 1.20252 0.84031 1.04405 1.03268 1.21456 0.95889 0.86057 1.12241 1.21113 0.88516 0.96644 1.10304 1.19481 1.00312 0.86954 0.95561 1.21685 0.99807 1.00563 0.96953 1.21681 0.99972 1.00486 0.96717 1.69875 1.23200 1.10044 1.20581 1.23793 0.86385 0.90713 1.04167 1.45636 1.06127 1.07884 1.54844 1.22185 0.99280 0.76415 1.04009 1.21960 0.93200 1.01298 1.00177 1.21906 0.97969 0.96241 0.99535 1.17818 0.87838 0.90516 0.96365 0.93685 1.20728 0.90569 1.37659 1.03827 0.96712 1.25961 0.96488 0.96158 1.00047 1.70074 1.01989 1.46245 1.40703 0.85825 0.78878 0.79829 0.78940 1.20620 1.20527 1.14783 0.90453 0.88785 0.90171 0.87596 0.95788 0.90023 0.93878 0.95452 0.92994 0.90222 0.86572 0.89250 0.91367 0.86230 0.91090 0.93045 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.25 9.85 71.24 0.70 -0.55 16 2 C -0.04 -1.39 6.98 41.09 0.29 -1.10 16 3 C -0.04 -1.46 5.61 41.41 0.23 -1.23 16 4 C 0.00 -0.12 3.28 -11.54 -0.04 -0.16 16 5 C -0.13 -4.28 9.17 71.98 0.66 -3.62 16 6 C -0.13 -3.89 9.18 71.98 0.66 -3.23 16 7 N -0.52 -26.25 11.11 -175.67 -1.95 -28.20 16 8 C 0.21 10.06 6.99 138.23 0.97 11.03 16 9 N -0.46 -16.78 3.14 -499.34 -1.57 -18.35 16 10 C 0.10 2.57 6.71 86.47 0.58 3.15 16 11 C -0.13 -3.41 5.94 30.73 0.18 -3.22 16 12 C -0.12 -4.51 5.15 30.78 0.16 -4.36 16 13 C 0.10 4.66 2.00 -12.04 -0.02 4.64 16 14 H 0.05 2.22 5.61 -2.39 -0.01 2.21 16 15 C -0.49 -29.69 8.76 25.60 0.22 -29.46 16 16 H 0.01 1.03 8.06 -2.91 -0.02 1.00 16 17 C 0.01 0.61 5.47 84.66 0.46 1.07 16 18 N -0.95 -62.10 13.96 21.45 0.30 -61.80 16 19 Si 0.94 44.74 26.72 68.60 1.83 46.58 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.23 -9.24 5.93 99.48 0.59 -8.65 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.09 1.57 7.18 -2.39 -0.02 1.55 16 25 H 0.08 1.27 7.71 -2.39 -0.02 1.25 16 26 H 0.11 2.48 6.82 -2.39 -0.02 2.46 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 2.05 7.80 -2.38 -0.02 2.03 16 34 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.07 1.82 8.12 -2.38 -0.02 1.80 16 36 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.63 7.02 -2.38 -0.02 2.61 16 38 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 39 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -80.45 308.13 4.56 -75.89 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.90 Total: 12.92 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 5.05 Total: -27.03 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.22 Total: -108.35 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.83 Total: 46.58 kcal Total: -80.45 4.56 -75.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.491 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds