Wall clock time and date at job start Mon Mar 30 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34850 * 126.64992 * 2 1 4 4 C 1.50701 * 125.96751 * 0.02748 * 3 2 1 5 5 C 1.53000 * 109.47423 * 120.00516 * 4 3 2 6 6 C 1.53004 * 109.47273 * 240.00365 * 4 3 2 7 7 N 1.34299 * 108.07344 * 180.02562 * 3 2 1 8 8 C 1.30090 * 109.20624 * 0.03839 * 7 3 2 9 9 N 1.35420 * 108.63190 * 359.91475 * 8 7 3 10 10 C 1.46469 * 124.82753 * 180.14681 * 9 8 7 11 11 C 1.53264 * 108.79474 * 17.11746 * 10 9 8 12 12 C 1.53151 * 109.48900 * 309.61739 * 11 10 9 13 13 C 1.51040 * 127.39339 * 179.91880 * 8 7 3 14 14 H 1.09005 * 109.71779 * 76.24830 * 13 8 7 15 15 C 1.50704 * 109.71249 * 315.61374 * 13 8 7 16 16 H 1.08000 * 119.99666 * 241.24104 * 15 13 8 17 17 C 1.37878 * 120.00194 * 61.24270 * 15 13 8 18 18 N 1.31518 * 119.99930 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00269 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47301 * 89.99987 * 19 17 15 21 21 H 1.48499 * 109.47481 * 210.00023 * 19 17 15 22 22 H 1.48506 * 109.46912 * 330.00014 * 19 17 15 23 23 H 1.08998 * 109.47014 * 89.98439 * 1 2 3 24 24 H 1.09000 * 109.47018 * 209.97912 * 1 2 3 25 25 H 1.09000 * 109.47516 * 329.98101 * 1 2 3 26 26 H 1.08993 * 109.47282 * 0.02562 * 4 3 2 27 27 H 1.09003 * 109.47060 * 59.99559 * 5 4 3 28 28 H 1.08992 * 109.47621 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.46503 * 300.00405 * 5 4 3 30 30 H 1.09004 * 109.47210 * 59.99626 * 6 4 3 31 31 H 1.08998 * 109.47355 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47332 * 300.00400 * 6 4 3 33 33 H 1.08996 * 109.58787 * 257.31889 * 10 9 8 34 34 H 1.09003 * 109.57843 * 136.90719 * 10 9 8 35 35 H 1.09002 * 109.46912 * 189.60945 * 11 10 9 36 36 H 1.08998 * 109.46612 * 69.62023 * 11 10 9 37 37 H 1.09000 * 109.50790 * 189.42437 * 12 11 10 38 38 H 1.09009 * 109.50558 * 309.56074 * 12 11 10 39 39 H 0.96998 * 120.00301 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3120 1.0819 0.0000 4 6 1.8618 2.5201 0.0006 5 6 2.3983 3.2220 1.2497 6 6 2.3971 3.2227 -1.2487 7 7 3.5850 0.6541 -0.0006 8 6 3.5993 -0.6468 -0.0017 9 7 2.3209 -1.0935 -0.0001 10 6 1.9279 -2.5045 0.0024 11 6 3.1315 -3.3516 0.4298 12 6 4.3543 -2.9598 -0.4050 13 6 4.8093 -1.5508 -0.0044 14 1 5.2515 -1.5763 0.9916 15 6 5.8218 -1.0419 -0.9980 16 1 6.1150 -1.6591 -1.8343 17 6 6.3738 0.2115 -0.8392 18 7 6.0172 0.9629 0.1796 19 14 7.6282 0.8426 -2.0710 20 1 6.9286 1.5617 -3.1658 21 1 8.5672 1.7702 -1.3904 22 1 8.3863 -0.3025 -2.6362 23 1 -0.3633 0.0003 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3634 0.8898 0.5141 26 1 0.7726 2.5598 0.0015 27 1 3.4876 3.1822 1.2493 28 1 2.0730 4.2623 1.2500 29 1 2.0169 2.7214 2.1397 30 1 2.0150 2.7226 -2.1387 31 1 2.0711 4.2627 -1.2486 32 1 3.4864 3.1829 -1.2493 33 1 1.6119 -2.7975 -0.9987 34 1 1.1079 -2.6540 0.7049 35 1 2.9073 -4.4067 0.2728 36 1 3.3414 -3.1780 1.4852 37 1 5.1618 -3.6688 -0.2226 38 1 4.0914 -2.9706 -1.4628 39 1 6.4052 1.8448 0.2912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:59 Heat of formation + Delta-G solvation = 45.689712 kcal Electronic energy + Delta-G solvation = -19221.247015 eV Core-core repulsion = 16550.236922 eV Total energy + Delta-G solvation = -2671.010092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14736 -36.25502 -34.11248 -33.43683 -31.44319 -29.85964 -28.45223 -26.42823 -25.41112 -24.76859 -22.45725 -21.42241 -20.29434 -18.20423 -17.91570 -16.35957 -15.26550 -15.03540 -14.33916 -14.30933 -13.72189 -13.42520 -13.12474 -12.72730 -12.44162 -12.33274 -12.27599 -12.24729 -11.94040 -11.45741 -11.34293 -11.00972 -10.79117 -10.52562 -10.48251 -10.42476 -10.37033 -10.14903 -9.97050 -9.40217 -9.14844 -8.37347 -8.13831 -7.85686 -6.76058 -5.71740 -3.83343 3.14654 3.43191 3.49755 3.51095 3.81925 4.54026 4.69051 5.14007 5.27404 5.39882 5.50432 5.56729 5.59802 5.67322 5.69737 5.87126 5.88960 5.99734 6.01801 6.08751 6.18039 6.24750 6.25421 6.36606 6.43719 6.55550 6.61663 6.66371 6.72672 6.87561 6.99016 7.04599 7.29194 7.52480 7.71000 7.99357 8.09635 8.35246 8.63627 9.10736 9.78089 9.83316 11.29149 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.011926 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.205122 B = 2347.307566 C = 3688.533163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.081 4.081 3 C -0.011 4.011 4 C 0.000 4.000 5 C -0.134 4.134 6 C -0.134 4.134 7 N -0.402 5.402 8 C 0.259 3.741 9 N -0.476 5.476 10 C 0.114 3.886 11 C -0.133 4.133 12 C -0.114 4.114 13 C 0.129 3.871 14 H 0.046 0.954 15 C -0.545 4.545 16 H 0.055 0.945 17 C 0.082 3.918 18 N -0.810 5.810 19 Si 0.881 3.119 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 -2.594 1.005 10.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.194 4.194 3 C -0.142 4.142 4 C -0.019 4.019 5 C -0.192 4.192 6 C -0.192 4.192 7 N -0.116 5.116 8 C -0.004 4.004 9 N -0.162 5.162 10 C -0.010 4.010 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.109 3.891 14 H 0.064 0.936 15 C -0.583 4.583 16 H 0.074 0.926 17 C -0.127 4.127 18 N -0.441 5.441 19 Si 0.709 3.291 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.254 -2.011 1.133 9.538 hybrid contribution -0.272 -0.137 -0.780 0.837 sum -9.526 -2.148 0.353 9.772 Atomic orbital electron populations 1.19961 0.89333 1.01512 1.00961 1.20400 0.92959 0.87895 1.18143 1.20653 0.91018 0.93582 1.08925 1.19208 0.97670 0.89634 0.95395 1.21711 1.02931 0.97816 0.96744 1.21708 1.02678 0.97927 0.96895 1.70746 1.16232 1.08026 1.16620 1.25079 0.84002 0.91303 0.99980 1.45673 1.07883 1.04977 1.57648 1.21623 0.98017 0.80256 1.01092 1.21913 0.95544 0.98320 1.01335 1.21751 0.95413 0.99318 0.98773 1.17460 0.87274 0.85752 0.98617 0.93632 1.20619 1.24040 1.02175 1.11452 0.92647 1.24876 0.95991 0.96653 0.95207 1.70080 1.37846 1.08910 1.27296 0.86803 0.81636 0.78704 0.81960 1.20994 1.21435 1.20252 0.92628 0.93225 0.91333 0.92097 0.91206 0.94009 0.93739 0.93696 0.93911 0.91528 0.91553 0.91276 0.91136 0.91458 0.91771 0.92555 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 9.85 36.01 0.35 -0.55 16 2 C -0.08 -1.66 6.98 -81.80 -0.57 -2.23 16 3 C -0.01 -0.25 5.61 -82.71 -0.46 -0.71 16 4 C 0.00 0.01 3.28 -91.77 -0.30 -0.29 16 5 C -0.13 -2.43 9.18 37.16 0.34 -2.09 16 6 C -0.13 -2.49 9.18 37.16 0.34 -2.15 16 7 N -0.40 -10.62 8.29 -6.88 -0.06 -10.68 16 8 C 0.26 6.54 6.84 -155.24 -1.06 5.47 16 9 N -0.48 -10.12 3.13 -109.19 -0.34 -10.46 16 10 C 0.11 1.87 6.71 -3.92 -0.03 1.84 16 11 C -0.13 -2.13 5.94 -26.52 -0.16 -2.29 16 12 C -0.11 -2.25 5.23 -26.45 -0.14 -2.39 16 13 C 0.13 3.23 2.48 -92.55 -0.23 3.00 16 14 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.54 -15.09 8.53 -34.44 -0.29 -15.39 16 16 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 17 C 0.08 2.32 5.11 -17.82 -0.09 2.23 16 18 N -0.81 -23.51 10.64 55.43 0.59 -22.92 16 19 Si 0.88 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.67 7.71 -51.93 -0.40 0.27 16 25 H 0.07 0.94 7.18 -51.93 -0.37 0.57 16 26 H 0.06 0.99 6.82 -51.93 -0.35 0.64 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.97 7.80 -51.93 -0.41 0.56 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.13 8.08 -51.92 -0.42 0.71 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -31.20 309.16 -9.03 -40.23 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.57 Total: -2.15 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.30 Total: -15.54 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.19 Total: -44.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.20 -9.03 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.923 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds